Posts by sspseudoo

1) Questions and Answers : Unix/Linux : Bug: rosetta_4.08_x86_64-pc-linux-gnu uses unsupported CPU features. (Message 96393) Posted 12 May 2020 by sspseudoo Post: I have problems again: https://boinc.bakerlab.org/rosetta/results.php?userid=2083373 I did "strace" a crashing process and these are the last lines: --- SIGILL {si_signo=SIGILL, si_code=ILL_ILLOPN, si_addr=0x14c77b8} --- ioctl(0, TCGETS, {B38400 opost isig icanon echo ...}) = 0 ioctl(0, TCGETS, {B38400 opost isig icanon echo ...}) = 0 ioctl(0, SNDCTL_TMR_CONTINUE or TCSETSF, {B38400 opost isig icanon echo ...}) = 0 ioctl(0, TCGETS, {B38400 opost isig icanon echo ...}) = 0 --- SIGSEGV {si_signo=SIGSEGV, si_code=SEGV_MAPERR, si_addr=NULL} --- --- SIGSEGV {si_signo=SIGSEGV, si_code=SEGV_MAPERR, si_addr=NULL} --- +++ killed by SIGSEGV (core dumped) +++ Maybe again "wrong" instructions? Some packages seem to work, the others crash after a minute or so... @Germano_0x: I did it as follows: Wait for a new task that is about to crash. Using "top" finding out the PID, or look in your boinc manager under properties or similar. Using "strace -pid" to attach to the process. See the crash and the address as above. Then (using Fedora) I just did a "coredumpctl gdb" and the coredump was automatically loaded into gdb. In gdb I used "bt" to backtrace the crash. The last adress before <signal handler called> is the same address as shown in "strace". (So the strace thing I did in the beginning was not necessary at all, but already lead to into the right direction, I suppose.) Following I disassembled the area as written in the first post "(gdb) disassemble 0x14c77b8,0x14c77c8" Dump of assembler code from 0x14c77b8 to 0x14c77c8: 0x00000000014c77b8: pshufb %xmm1,%xmm0 0x00000000014c77bd: movdqa %xmm0,0x0(%r13) 0x00000000014c77c3: jae 0x14c788c End of assembler dump. The area about to look at: I do not really know, but just went with the last value a bit higher. The not supported instruction pshufb seems still to be used in rosetta_4.20_x86_64-pc-linux-gnu on this "older" computer.
2) Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content (Message 94796) Posted 18 Apr 2020 by sspseudoo Post: In my case the folder "slots" is in my home directory. Maybe the folder is defined during installation. In my case Rosetta 4.15 works with graphics and so the file /slots/0/stderrgfx.txt is empty. I had to install a few packages (also 32 bit packages although 64 bit OS) in order to get the graphics work, but forgot which packages. Maybe try packages that are recommended here (of course use maybe different package names on different linux distributions): https://wiki.archlinux.org/index.php/BOINC (Considerations when choosing a project -> Running on Arch64 -> To show graphics (e.g. Several projects of WCG, Climateprediction, Quake-Catcher Network) https://boinc.berkeley.edu/forum_thread.php?id=10704 Do you have error messages in the cmd terminal when you click "show graphics"?
3) Questions and Answers : Unix/Linux : R@H works, but all COVID-19 tasks fail (Message 92614) Posted 30 Mar 2020 by sspseudoo Post: Is this the same problem? https://boinc.bakerlab.org/rosetta/forum_thread.php?id=13658 And is it a good idea to add ralph@home in the BOINC client now to help testing the new adjusted binaries, when they are available? https://ralph.bakerlab.org/
4) Questions and Answers : Unix/Linux : R@H works, but all COVID-19 tasks fail (Message 92443) Posted 28 Mar 2020 by sspseudoo Post: I just upgraded my RAM to 12 GB and made some space free on my SSD (now 39 GB free space), and the COVID-tasks still crash. I checked my CPU with mprime torture test and my RAM with memtest86, both without problems, everything seems stable. Apart from those COVID-tasks no crashes occur when using the computer. [...] 27-Mar-2020 15:51:51 [---] [libc detection] gathered: 2.30, GNU libc 27-Mar-2020 15:51:51 [---] Host name: x-2017-1.local 27-Mar-2020 15:51:51 [---] Processor: 4 AuthenticAMD AMD Athlon(tm) II X4 620 Processor [Family 16 Model 5 Stepping 2] 27-Mar-2020 15:51:51 [---] Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc cpuid extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate vmmcall npt lbrv svm_lock nrip_save 27-Mar-2020 15:51:51 [---] OS: Linux Fedora: Fedora release 31 (Thirty One) [5.5.10-200.fc31.x86_64\|libc 2.30 (GNU libc)] 27-Mar-2020 15:51:51 [---] Memory: 11.45 GB physical, 3.74 GB virtual 27-Mar-2020 15:51:51 [---] Disk: 82.67 GB total, 39.07 GB free [...] Is it possible to make a backtrace of the crash and would it be helpful? Thanks in advance!
5) Questions and Answers : Unix/Linux : R@H works, but all COVID-19 tasks fail (Message 92350) Posted 26 Mar 2020 by sspseudoo Post: Thank you for the fast answer! I do no overclocking and the machine is stable, usually no crashes, and most other tasks are completed without problems. But there is only 4 GB RAM in total and I'm still using Firefox with many tabs. And there is not so much disk space left in my home partition (only 4 GB left, old but good Samsung SSD), may that be a problem? Is there a possibility to find out if RAM or disc space is the limiting factor? May logging flags help?
6) Questions and Answers : Unix/Linux : R@H works, but all COVID-19 tasks fail (Message 92322) Posted 26 Mar 2020 by sspseudoo Post: Hello everyone, i use rosetta@home on fedora 31 and it works. See https://boinc.bakerlab.org/rosetta/results.php?userid=2083373 My problem is that as soon as there is a COVID-19 task, the calculation will fail. This is the output in the command line: [...] 26-Mar-2020 10:09:04 [Rosetta@home] Starting task 2uc6gr8g_jhr_design1_COVID-19_SAVE_ALL_OUT_903414_1_0 [... nothing regarding COVID-19] 26-Mar-2020 10:10:28 [Rosetta@home] Computation for task 2uc6gr8g_jhr_design1_COVID-19_SAVE_ALL_OUT_903414_1_0 finished 26-Mar-2020 10:10:28 [Rosetta@home] Output file 2uc6gr8g_jhr_design1_COVID-19_SAVE_ALL_OUT_903414_1_0_r336008625_0 for task 2uc6gr8g_jhr_design1_COVID-19_SAVE_ALL_OUT_903414_1_0 absent [...] Command line output when I start BOINC: $ boinc 26-Mar-2020 10:08:31 [---] Starting BOINC client version 7.16.1 for x86_64-pc-linux-gnu 26-Mar-2020 10:08:31 [---] log flags: file_xfer, sched_ops, task 26-Mar-2020 10:08:31 [---] Libraries: libcurl/7.66.0 OpenSSL/1.1.1d-fips zlib/1.2.11 brotli/1.0.7 libidn2/2.3.0 libpsl/0.21.0 (+libidn2/2.2.0) libssh/0.9.3/openssl/zlib nghttp2/1.40.0 26-Mar-2020 10:08:31 [---] Data directory: /home/x 26-Mar-2020 10:08:32 [---] OpenCL CPU: pthread-AMD Athlon(tm) II X4 620 Processor (OpenCL driver vendor: The pocl project, driver version 1.5-pre, device version OpenCL 1.2 pocl HSTR: pthread-x86_64-unknown-linux-gnu-amdfam10) 26-Mar-2020 10:08:32 [---] No usable GPUs found 26-Mar-2020 10:08:32 [---] [libc detection] gathered: 2.30, GNU libc 26-Mar-2020 10:08:32 [---] Host name: x-2017-1.local 26-Mar-2020 10:08:32 [---] Processor: 4 AuthenticAMD AMD Athlon(tm) II X4 620 Processor [Family 16 Model 5 Stepping 2] 26-Mar-2020 10:08:32 [---] Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc cpuid extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate vmmcall npt lbrv svm_lock nrip_save 26-Mar-2020 10:08:32 [---] OS: Linux Fedora: Fedora release 31 (Thirty One) [5.5.10-200.fc31.x86_64\|libc 2.30 (GNU libc)] 26-Mar-2020 10:08:32 [---] Memory: 3.59 GB physical, 3.74 GB virtual 26-Mar-2020 10:08:32 [---] Disk: 82.67 GB total, 3.70 GB free 26-Mar-2020 10:08:32 [---] Local time is UTC +1 hours 26-Mar-2020 10:08:32 [---] No general preferences found - using defaults 26-Mar-2020 10:08:32 [---] Reading preferences override file 26-Mar-2020 10:08:32 [---] Preferences: 26-Mar-2020 10:08:32 [---] max memory usage when active: 1837.91 MB 26-Mar-2020 10:08:32 [---] max memory usage when idle: 3308.23 MB 26-Mar-2020 10:08:32 [---] max disk usage: 6.90 GB 26-Mar-2020 10:08:32 [---] don't use GPU while active 26-Mar-2020 10:08:32 [---] suspend work if non-BOINC CPU load exceeds 25% 26-Mar-2020 10:08:32 [---] (to change preferences, visit a project web site or select Preferences in the Manager) 26-Mar-2020 10:08:32 [---] Setting up project and slot directories 26-Mar-2020 10:08:32 [---] Checking active tasks 26-Mar-2020 10:08:32 [Rosetta@home] URL http://boinc.bakerlab.org/rosetta/; Computer ID 3780697; resource share 100 26-Mar-2020 10:08:32 [---] Setting up GUI RPC socket 26-Mar-2020 10:08:32 [---] Checking presence of 29 project files 26-Mar-2020 10:08:32 Initialization completed 26-Mar-2020 10:08:40 [Rosetta@home] project resumed by user [...] What can I do to debug this problem? Which log flags should I enable? https://boinc.berkeley.edu/wiki/Client_configuration#Logging_flags Thanks in advance!
7) Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content (Message 92208) Posted 24 Mar 2020 by sspseudoo Post: Same problem on Fedora 31, 64-bit.