Posts by CyberTailor

1) Message boards : Rosetta@home Science : Besides "de novo protein design" are we doing also a lot of benchmarks? (Message 98444)
Posted 9 Aug 2020 by Profile CyberTailor
Post:
activin receptor, tgfr... If I look for a PDP structure of these proteins, I always found the crystal structure of them

If you press C several times in graphics window it becomes clear there are two proteins not one. Sctructures of tgfbR2 and activin_receptorII are already known so I suppose the second one is being designed de novo (probably for some anti-cancer stuff)
2) Message boards : Number crunching : Tells us your thoughts on granting credit for large protein, long-running tasks (Message 96020)
Posted 4 May 2020 by Profile CyberTailor
Post:
if the BOINC Manager sees requests for memory that exceed that 4GB the task is actually aborted

If aborted tasks still return results, it's possible to assign credits for computed models.
3) Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content (Message 94711)
Posted 17 Apr 2020 by Profile CyberTailor
Post:
Fistly, there are slots only when tasks are running.
Secondly, stderrgfx.txt files are created when you launch graphics application.
4) Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content (Message 94683)
Posted 17 Apr 2020 by Profile CyberTailor
Post:
Upload your /var/lib/boinc/slots/*/stderr.gfx files there
5) Questions and Answers : Unix/Linux : Problem with screensaver (Message 94679)
Posted 17 Apr 2020 by Profile CyberTailor
Post:
boincscr relies on one of two window properties to work:

  1. WM_COMMAND: path to graphics application executable (for example, /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/rosetta_graphics_4.15_x86_64-pc-linux-gnu)
  2. WM_CLASS: executable name (for example, rosetta_graphics_4.15_x86_64-pc-linux-gnu)

rosetta_graphics sets none of them, so boincscr can't embed it to its window and shows "screensaver loading..."

P.S. If you want to have something screensaver-alike, you can use my overengineered shell script

6) Message boards : Rosetta@home Science : Prioritisation of COVID-19 work units (Message 92448)
Posted 28 Mar 2020 by Profile CyberTailor
Post:
Good morning I noticed that workunit related to covid19 there are no modeling but only 4 hours of fastrelax without interventions on the structure. I'm not a scientist but what is it for?

COVID-19 workunits have "design" in their names. By solving them you find amino-acid sequences for proteins of given structure, and that's why you see a static rotating model in the graphics view. The design of new protein molecules is necessary to develop a cure for SARS-CoV-2






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