1)
Questions and Answers :
Windows :
Virtualbox
(Message 105944)
Posted 15 Apr 2022 by Johannes Kingma Post: Ok. I can no longer contribute to Rosetta. I hate this as it used to be a great place. But no longer works for me. Let someone let Dr. Baker know please? |
2)
Message boards :
News :
Thank you!
(Message 103621)
Posted 30 Nov 2021 by Johannes Kingma Post: Thanks Falconet. I will move my attention to another project than |
3)
Questions and Answers :
Windows :
Virtualbox
(Message 103619)
Posted 30 Nov 2021 by Johannes Kingma Post: Thanks, Grant I hope it will not interfere with the Hyper-V machines I"m running. |
4)
Message boards :
News :
Thank you!
(Message 103488)
Posted 23 Nov 2021 by Johannes Kingma Post: But server status now states everything is honky-dory. Maybe include downtime on the start page? So people dont have to guess. My PC has not received new work for two weeks now. Reinstalled everything., |
5)
Questions and Answers :
Windows :
Virtualbox
(Message 103486)
Posted 23 Nov 2021 by Johannes Kingma Post: Do I understand that Rosetta@home requires new VirtualBox? I have and user HyperV and virtualbox crashes my PC. Do you recommend something else? Or should I just go away (with my 10.000.000 work done) |
6)
Questions and Answers :
Windows :
Nothing happening anymore
(Message 103445)
Posted 20 Nov 2021 by Johannes Kingma Post: Hi For some time now the Rosetta@home project is sitting there doing nothing. I checked the servers status and all is green all systems go. In Projects I see Project;Account;Team;Work done;Avg. work done;Resource share; status Rosetta@home;Johannes Kingma;;9,429,335;1,749,30;100 (100.0%); Tasks is empty, Transfers is empty. What is going on? |
7)
Questions and Answers :
Windows :
Computation error
(Message 101761)
Posted 7 May 2021 by Johannes Kingma Post: I went out and aborted all the pre_helical_bundles jobs and suggest you do the same on windows |
8)
Questions and Answers :
Windows :
Computation error
(Message 101760)
Posted 7 May 2021 by Johannes Kingma Post: Computation error after 8hours + of CPU usage is a bit harsh. Certainly if it happens to three tasks in a row. Is this something that is monitored by the boind team? Is there something I can do, or should not do? pre_helical_bundles_round1_attmept1_SAITR |
9)
Message boards :
Rosetta@home Science :
"IGNORE_THE_REST" vs. "SAVE_ALL_OUT" What does it mean?
(Message 101460)
Posted 23 Apr 2021 by Johannes Kingma Post: So really what does it mean? Save all out ignore the rest? (Mod.Sense is talking gibberish) |
10)
Message boards :
Rosetta@home Science :
Use Rosetta as Benchmark framework
(Message 101322)
Posted 16 Apr 2021 by Johannes Kingma Post: Why not team up with userbenchmark, passmark, speccy, novabench to use the benchmark to actually compute something sensible like protein folding. just a thought |
11)
Questions and Answers :
Windows :
Error while computing
(Message 101320)
Posted 16 Apr 2021 by Johannes Kingma Post: Hi. I suddenly and quit unexpectedly receive are large number of Error while computing . For tasks that actually run for quit a number of CPU cycles. Rosetta v4.20 exit status: 1 (0x00000001) Unknown error code, sample work unit name NTvpOdNd_BAYAAB_AAA_AA_AYAABAAAAA_X_CGGGGGGCGGGCGGCGGGGGGGGGGCGC_1-4_2-6_3-5.pdb_0001_abinitio_1_abinitio_SAVE_ALL_OUT_1390509_350_1 Work unit sample 1223053766 This work unit has failed on other hard ware as well. My computer is a bit sad about all the work and effort it took. Is there something I can sooth it with? |
12)
Message boards :
Technical News :
Due to user feedback and an attempt to reduce the load on our servers, we increased the default target run time from 3 to 6 hours, increased job deadlines to 14 days, and added the target cpu runtime option of 2 days
(Message 100735)
Posted 14 Mar 2021 by Johannes Kingma Post: As I use my computer as heating It is fine for me to run it 24/7. Energy is cheap hear and I can lower the central heating. So go ahead. |
13)
Message boards :
Rosetta@home Science :
Errors
(Message 100432)
Posted 17 Jan 2021 by Johannes Kingma Post: Recently I got quite a number of calculation errors on Rosetta. Is this a inherent problem of the algoritm? Also how can I move to another language? |
14)
Message boards :
Number crunching :
Remove? Rosetta lost its mind
(Message 96454)
Posted 13 May 2020 by Johannes Kingma Post: Rosetta@home: Notice from BOINC This project is using an old URL. When convenient, remove the project, then add https://boinc.bakerlab.org/rosetta/ 5/13/2020 7:00:20 PM But if I remove the project I won't get the credits? |
15)
Questions and Answers :
Windows :
Upload: pending (project backoff) Progress 100%
(Message 91706)
Posted 15 Feb 2020 by Johannes Kingma Post: Here you find a video of the behaviour allong with the log file: https://youtu.be/Z8JTmngeUmU |
16)
Questions and Answers :
Windows :
Upload: pending (project backoff) Progress 100%
(Message 91693)
Posted 13 Feb 2020 by Johannes Kingma Post: http://boinc.bakerlab.org/rosetta_cgi/file_upload_handler returns <data_server_reply> <status>1</status> <message>no command</message> </data_server_reply> |
17)
Questions and Answers :
Windows :
Upload: pending (project backoff) Progress 100%
(Message 91692)
Posted 13 Feb 2020 by Johannes Kingma Post: I again have a number of job upload transfers with progress 100% Size xx.xx/xx.xx MB where xx.xx == xx.xx and Status "Upload: pending (projekt backoff: 00:xx:yy" Closing and opening has no effect. This typically seems to happen when our firewall closes and I have to refresh my Internet session (logon again to gain access to internet). What I see in stedoutae.txt is: 13-Feb-2020 17:43:50 [Rosetta@home] [fxd] starting upload, upload_offset -1 13-Feb-2020 17:43:50 [Rosetta@home] Started upload of foldit_2008663_0000_00_asym_dock_SAVE_ALL_OUT_890050_221_0_r967414752_0 13-Feb-2020 17:43:50 [Rosetta@home] [file_xfer] URL: http://boinc.bakerlab.org/rosetta_cgi/file_upload_handler 13-Feb-2020 17:43:50 [Rosetta@home] [fxd] starting upload, upload_offset -1 13-Feb-2020 17:43:50 [Rosetta@home] Started upload of foldit_2008663_y239_00_asym_dock_SAVE_ALL_OUT_890052_221_0_r1281210648_0 13-Feb-2020 17:43:50 [Rosetta@home] [file_xfer] URL: http://boinc.bakerlab.org/rosetta_cgi/file_upload_handler 13-Feb-2020 17:43:50 [---] [notice] start fetch from http://boinc.bakerlab.org/rosetta/notices.php?userid=1965758&auth=1965758_622400646b10aee4b7aa3015fd6bf4aa 13-Feb-2020 17:43:59 [---] [notice] handling reply from http://boinc.bakerlab.org/rosetta/notices.php?userid=1965758&auth=1965758_622400646b10aee4b7aa3015fd6bf4aa 13-Feb-2020 17:43:59 [---] [notice] parsed RSS feed: total 0 error 0 added 0 13-Feb-2020 17:43:59 [Rosetta@home] [file_xfer] http op done; retval 0 (Success) 13-Feb-2020 17:43:59 [Rosetta@home] [file_xfer] parsing upload response: <data_server_reply> <status>0</status> <file_size>0</file_size> </data_server_reply> 13-Feb-2020 17:43:59 [Rosetta@home] [file_xfer] parsing status: 0 13-Feb-2020 17:43:59 [Rosetta@home] [fxd] starting upload, upload_offset 0 13-Feb-2020 17:43:59 [Rosetta@home] [file_xfer] http op done; retval 0 (Success) 13-Feb-2020 17:43:59 [Rosetta@home] [file_xfer] parsing upload response: <data_server_reply> <status>0</status> <file_size>0</file_size> but I do not know if this relates to a current upload attempt. What I don't understand is why retry an upload when it was uploaded for 100%. Was this not registered with the rosetta servers? Could someone check that for me? In the projects folder I find 03.02.2020 13:57 17’056’209 foldit_2008663_0000_00_asym_dock_SAVE_ALL_OUT_890050_221_0_r967414752_0 03.02.2020 08:36 382 foldit_2008663_0000_global_dock_flags 04.02.2020 23:07 16’894’107 foldit_2008663_0001_00_asym_dock_SAVE_ALL_OUT_890054_221_0_r1747213757_0 03.02.2020 08:38 382 foldit_2008663_0001_global_dock_flags 04.02.2020 16:02 15’428’807 foldit_2008663_0009_00_asym_dock_SAVE_ALL_OUT_890043_221_0_r169019485_0 03.02.2020 08:38 382 foldit_2008663_0009_global_dock_flags 05.02.2020 15:15 3’305’197 foldit_2008663_c029_data.zip 05.02.2020 03:23 14’675’260 foldit_2008663_c030_00_asym_dock_SAVE_ALL_OUT_890053_221_0_r1653133956_0 03.02.2020 08:38 382 foldit_2008663_c030_global_dock_flags 04.02.2020 15:47 15’860’146 foldit_2008663_y047_00_asym_dock_SAVE_ALL_OUT_890049_221_0_r1271556116_0 03.02.2020 08:39 382 foldit_2008663_y047_global_dock_flags 05.02.2020 06:46 14’232’966 foldit_2008663_y239_00_asym_dock_SAVE_ALL_OUT_890052_221_0_r1281210648_0 03.02.2020 08:37 382 foldit_2008663_y239_global_dock_flags 05.02.2020 02:35 15’055’155 foldit_2008663_y688_00_asym_dock_SAVE_ALL_OUT_890048_221_0_r1802263664_0 03.02.2020 08:39 382 foldit_2008663_y688_global_dock_flags |
18)
Message boards :
Cafe Rosetta :
No new work
(Message 91607)
Posted 24 Jan 2020 by Johannes Kingma Post: Who else is getting now new work? |
19)
Questions and Answers :
Windows :
Rosetta discontinued?
(Message 91602)
Posted 23 Jan 2020 by Johannes Kingma Post: Was Rosetta discontinued? I'm not receiving any new work. |
20)
Message boards :
Number crunching :
Rosetta 4.0+
(Message 91452)
Posted 12 Dec 2019 by Johannes Kingma Post: Since a couple of months I face a problem that the Windows 4.07 stalls on uploads reaching 100%. The than move to status Upload: pending (project backoff). All data seems to upload fine. stdouae.txt reads:
12-Dec-2019 10:36:29 [Rosetta@home] Sending scheduler request: Requested by user. 12-Dec-2019 10:36:29 [Rosetta@home] Reporting 1 completed tasks 12-Dec-2019 10:36:29 [Rosetta@home] Not requesting tasks: too many uploads in progress 12-Dec-2019 10:36:31 [Rosetta@home] Scheduler request completed 12-Dec-2019 10:36:48 [Rosetta@home] work fetch suspended by user 12-Dec-2019 10:36:49 [Rosetta@home] work fetch resumed by user
|
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