1)
Message boards :
Number crunching :
Minirosetta 1.86
(Message 62489)
Posted 27 Jul 2009 by RC Post: Sure enough, I got an error downloading this one: http://boinc.bakerlab.org/rosetta/result.php?resultid=268418275 Sun Jul 26 20:50:01 2009 rosetta@home [error] Signature verification error for minirosetta_database_rev31588.zip Sun Jul 26 20:50:01 2009 rosetta@home [error] Checksum or signature error for minirosetta_database_rev31588.zip It's still showing up in BoincMgr as "downloading" although there are no files shown on the transfers tab to download... |
2)
Message boards :
Number crunching :
Minirosetta 1.82/1.88
(Message 62291)
Posted 19 Jul 2009 by RC Post: Not sure what happened to this one: http://boinc.bakerlab.org/rosetta/result.php?resultid=266600560 <core_client_version>6.6.36</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> [2009- 7-18 8:29:15:] :: BOINC:: Initializing ... ok. [2009- 7-18 8:29:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 # cpu_run_time_pref: 28800 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 Starting work on structure: _00027 Starting work on structure: _00028 Starting work on structure: _00029 Starting work on structure: _00030 Starting work on structure: _00031 Starting work on structure: _00032 Starting work on structure: _00033 Starting work on structure: _00034 Starting work on structure: _00035 Starting work on structure: _00036 Starting work on structure: _00037 Starting work on structure: _00038 Starting work on structure: _00039 Starting work on structure: _00040 Starting work on structure: _00041 Starting work on structure: _00042 Starting work on structure: _00043 Starting work on structure: _00044 Starting work on structure: _00045 Starting work on structure: _00046 Starting work on structure: _00047 Starting work on structure: _00048 Starting work on structure: _00049 Starting work on structure: _00050 Starting work on structure: _00051 Starting work on structure: _00052 Starting work on structure: _00053 Starting work on structure: _00054 Starting work on structure: _00055 Starting work on structure: _00056 Starting work on structure: _00057 [2009- 7-18 20:37: 0:] :: BOINC:: Initializing ... ok. [2009- 7-18 20:37: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 28800 Starting work on structure: _00057 Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_2 ... success! SIGBUS: bus error Crashed executable name: minirosetta_1.82_i686-apple-darwin built using BOINC library version 6.5.0 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.5.7 build 9J61 Sat Jul 18 20:37:10 2009 atos cannot load symbols for the file minirosetta_1.82_i686-apple-darwin. 0 0x00703b59 SIGPIPE: write on a pipe with no reader 1 0x004c2bd6 SIGPIPE: write on a pipe with no reader 2 0x909252bb SIGPIPE: write on a pipe with no reader 3 0xffffffff SIGPIPE: write on a pipe with no reader 4 0x00a7c005 SIGPIPE: write on a pipe with no reader 5 0x00158633 SIGPIPE: write on a pipe with no reader 6 0x0016e2e7 SIGPIPE: write on a pipe with no reader 7 0x005ea582 SIGPIPE: write on a pipe with no reader 8 0x00115072 SIGPIPE: write on a pipe with no reader 9 0x00128717 SIGPIPE: write on a pipe with no reader 10 0x000042a8 SIGPIPE: write on a pipe with no reader 11 0x0000204e SIGPIPE: write on a pipe with no reader 12 0x00001f75 SIGPIPE: write on a pipe with no reader 13 0x00000014 Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x908ed8c2 ecx: 0xbfff7c0c edx: 0x908b9286 edi: 0x00000000 esi: 0x00000000 ebp: 0xbfff7c48 esp: 0xbfff7c0c ss: 0x0000001f efl: 0x00000206 eip: 0x908b9286 cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 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0x95c4ffff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib 0x95d4b000 - 0x95d85fff /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI 0x95dcd000 - 0x95dd1fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib 0x95dd2000 - 0x960f8fff /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime 0x960f9000 - 0x9622cfff /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x9634b000 - 0x96416fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync 0x96417000 - 0x96474fff /usr/lib/libstdc++.6.dylib 0x96632000 - 0x9663cfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound 0x9663d000 - 0x9666cfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE 0x96677000 - 0x96680fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition 0x966bc000 - 0x966bcfff /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate 0x96821000 - 0x96839fff /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo 0x9683a000 - 0x9691bfff /usr/lib/libxml2.2.dylib 0x96929000 - 0x969cdfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork 0x969ce000 - 0x969f9fff /usr/lib/libauto.dylib 0x96b7a000 - 0x96b8afff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis 0x96b9b000 - 0x96b9bfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices 0x96be1000 - 0x96ee9fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox 0x970ac000 - 0x970b0fff /usr/lib/system/libmathCommon.A.dylib 0x970b1000 - 0x970bffff /usr/lib/libz.1.dylib 0x970c0000 - 0x974d0fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib Exiting... </stderr_txt> ]]> |
3)
Message boards :
Number crunching :
Problems with Minirosetta 1.80
(Message 62024)
Posted 30 Jun 2009 by RC Post: Another one that died after almost 13 hours (my runtime preference is 8 hours): http://boinc.bakerlab.org/rosetta/result.php?resultid=262397691 |
4)
Message boards :
Number crunching :
Problems with Minirosetta 1.80
(Message 61925)
Posted 24 Jun 2009 by RC Post: I have also had a couple of failures on a Mac. In both cases the run time was less than 10 minutes: http://boinc.bakerlab.org/rosetta/result.php?resultid=261100252 http://boinc.bakerlab.org/rosetta/result.php?resultid=261064311 |
5)
Message boards :
Number crunching :
Minirosetta v1.40 bug thread
(Message 56899)
Posted 13 Nov 2008 by RC Post: http://boinc.bakerlab.org/rosetta/workunit.php?wuid=188277752 This WU ran 19.5 hours before I killed it (my run time preference is 6 hours). The next computer to pick it up had a compute error. |
6)
Message boards :
Number crunching :
Problems with Rosetta version 5.98
(Message 54035)
Posted 28 Jun 2008 by RC Post: Another compute error, http://boinc.bakerlab.org/rosetta/result.php?resultid=173797309 |
7)
Message boards :
Number crunching :
Problems with Rosetta version 5.80
(Message 46304)
Posted 15 Sep 2007 by RC Post: OK, great! I'm glad you were able to catch one. Assuming that others behave the same way (a bit of a stretch with only a single one observed, but it's all we have to go by)... the fact that it is still on model one is the reason why the task fails and only 20 credits are granted. Here's another one |
8)
Message boards :
Number crunching :
Problems with Rosetta version 5.43
(Message 33537)
Posted 27 Dec 2006 by RC Post: These two workunits had errors on my Linux box host 4280: Correction: Rosetta was not running at the time, but malariacontrol was, and boincmgr was taking all of the CPU - so perhaps it's not a Rosetta problem at all, but it's the Rosetta WUs that disappeared...the malariacontrol WU completed without incident. Thanks |
9)
Message boards :
Number crunching :
Problems with Rosetta version 5.43
(Message 33521)
Posted 27 Dec 2006 by RC Post: These two workunits had errors on my Linux box host 4280: 47741036 47843769 I had noticed that boincmgr was eating up most of my CPU and rosetta was not getting any, so I killed and restarted boinc. Here's what I saw in the logfile: 2006-12-25 16:40:21 [---] Starting BOINC client version 5.4.9 for i686-pc-linux- gnu 2006-12-25 16:40:21 [---] libcurl/7.15.3 OpenSSL/0.9.8a zlib/1.2.3 2006-12-25 16:40:21 [---] Data directory: /home/boinc 2006-12-25 16:40:21 [rosetta@home] State file error: missing application file rosetta^?5.43_i686-pc-linux-gnu 2006-12-25 16:40:21 [rosetta@home] Can't handle application version in state file 2006-12-25 16:40:21 [rosetta@home] State file error: no application version rosetta 543 2006-12-25 16:40:21 [rosetta@home] Can't handle workunit in state file 2006-12-25 16:40:21 [rosetta@home] State file error: no application version rosetta 543 2006-12-25 16:40:21 [rosetta@home] Can't handle workunit in state file 2006-12-25 16:40:21 [rosetta@home] State file error: missing task s019__BOINC_ABRELAX_NEWRELAXFLAGS_hom008__1458_16385 2006-12-25 16:40:21 [rosetta@home] Can't link task s019__BOINC_ABRELAX_NEWRELAXFLAGS_hom008__1458_16385_1 in state file 2006-12-25 16:40:21 [rosetta@home] State file error: missing task 1aaa_1_NMRREF_1_1aaa_1_id_model_16IGNORE_THE_REST_idl_1469_1215 2006-12-25 16:40:21 [rosetta@home] Can't link task 1aaa_1_NMRREF_1_1aaa_1_id_model_16IGNORE_THE_REST_idl_1469_1215_0 in state file 2006-12-25 16:40:21 [rosetta@home] State file error: result s019__BOINC_ABRELAX_NEWRELAXFLAGS_hom008__1458_16385_1 not found [...] 2006-12-25 16:40:21 [---] General prefs: from Einstein@Home (last modified 2006-04-27 09:57:35) 2006-12-25 16:40:21 [---] General prefs: no separate prefs for home; using your defaults 2006-12-25 16:40:21 [---] Remote control allowed 2006-12-25 16:40:21 [---] GUI RPC bind failed: -1 2006-12-25 16:40:22 [---] Remote control allowed 2006-12-25 16:40:22 [---] GUI RPC bind failed: -1 2006-12-25 16:40:23 [---] Remote control allowed The "GUI RPC bind failed: -1" errors were from boincmgr, which failed to start, so I killed it and restarted boinc again. Both of these tasks disappeared without a trace...any clues? |
10)
Message boards :
Number crunching :
Report problems with Rosetta version 5.36
(Message 31130)
Posted 14 Nov 2006 by RC Post: I also have two WUs that failed with a validate error: 46966003 46965919 Both of these ran normally with no errors in the log. This is on a Linux box (AMD Athlon64 3000, no screensaver, non-optimized x86 BOINC v5.4.9). |
11)
Message boards :
Number crunching :
Report stuck & aborted WU here please - II
(Message 13704)
Posted 14 Apr 2006 by RC Post: Another one (almost 6 hours at 1.04% on Mac OS X) - aborted. http://boinc.bakerlab.org/rosetta/result.php?resultid=17050793 |
12)
Message boards :
Number crunching :
Report stuck & aborted WU here please - II
(Message 13677)
Posted 13 Apr 2006 by RC Post: This unit stuck at 1.04% for 5.5 hours on Linux with Rosetta 4.98: TRUNCATE_TERMINI_FULLRELAX_1enh__433_593_0 http://boinc.bakerlab.org/rosetta/result.php?resultid=17018950 |
13)
Message boards :
Number crunching :
Report stuck & aborted WU here please
(Message 12787)
Posted 29 Mar 2006 by RC Post: http://boinc.bakerlab.org/rosetta/workunit.php?wuid=12388765 I suspended this unit after it remained at 1% for almost 4 hours. After suspending BOINC I tried running rosetta standalone for a while; it went to 17% within 15 minutes. When I restarted BOINC and resumed processing on this unit, it reset itself to zero, so I aborted it. |
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