Posts by M.L.

21) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51856) Posted 9 Mar 2008 by M.L. Post: Task ID 146196064 Name CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3301940_1 Workunit 133234335 Created 6 Mar 2008 22:54:41 UTC Sent 6 Mar 2008 22:55:13 UTC Received 9 Mar 2008 2:59:39 UTC Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) Computer ID 735230 Report deadline 16 Mar 2008 22:55:13 UTC CPU time 15.90625 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 10800 # random seed: -22899 bad seed ERROR:: Exit from: .dock_structure.cc line: 429 </stderr_txt> ]]> Validate state Invalid Claimed credit 0.066190701502822 Granted credit 0 application version 5.82
22) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51855) Posted 9 Mar 2008 by M.L. Post: Task ID 146196149 Name CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3301933_1 Workunit 133234029 Created 6 Mar 2008 22:55:02 UTC Sent 6 Mar 2008 22:55:13 UTC Received 9 Mar 2008 0:22:48 UTC Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) Computer ID 735230 Report deadline 16 Mar 2008 22:55:13 UTC CPU time 16.359375 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: -22892 bad seed ERROR:: Exit from: .dock_structure.cc line: 429 </stderr_txt> ]]> Validate state Invalid Claimed credit 0.0680762912312914 Granted credit 0 application version 5.82 This task had failed previously
23) Message boards : Number crunching : Problems with minirosetta version 1.+ (Message 51854) Posted 8 Mar 2008 by M.L. Post: Re msg 51846 &51845. Just realised that at the time these two tasks were running I was attacked by -MONARONADONA-. Tech support at my ISP had to intervene and run their own cleaner, hopefully am now clean.
24) Message boards : Number crunching : Problems with minirosetta version 1.+ (Message 51846) Posted 7 Mar 2008 by M.L. Post: Not sure what happened with these two tasks> Task ID 145928336 Name score12_hb_envtest62_A_1a19A_2935_24190_0 Workunit 133029909 Created 5 Mar 2008 21:34:09 UTC Sent 5 Mar 2008 21:34:50 UTC Received 7 Mar 2008 19:38:37 UTC Server state Over Outcome Client error Client state Compute error Exit status 0 (0x0) Computer ID 735230 Report deadline 15 Mar 2008 21:34:50 UTC CPU time 12.98438 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <stderr_txt> Graphics are disabled due to configuration... Graphics are disabled due to configuration... Graphics are disabled due to configuration... No heartbeat from core client for 30 sec - exiting Graphics are disabled due to configuration... Graphics are disabled due to configuration... Too many restarts with no progress. Keep application in memory while preempted. ====================================================== DONE :: 1 starting structures 12.3906 cpu seconds This process generated 0 decoys from 0 attempts ====================================================== BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>score12_hb_envtest62_A_1a19A_2935_24190_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]> Validate state Invalid Claimed credit 0.0534621525244184 Granted credit 0 application version 1.07
25) Message boards : Number crunching : Problems with minirosetta version 1.+ (Message 51845) Posted 7 Mar 2008 by M.L. Post: Task ID 145897568 Name score12_hb_envtest62_A_1tig__2935_19641_0 Workunit 133002633 Created 5 Mar 2008 18:28:56 UTC Sent 5 Mar 2008 18:29:28 UTC Received 7 Mar 2008 19:29:34 UTC Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) Computer ID 735230 Report deadline 15 Mar 2008 18:29:28 UTC CPU time 2055.751 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 14400 Graphics are disabled due to configuration... Graphics are disabled due to configuration... error: cannot delete old ./minirosetta_database/scoring/weights/dna.wts error: cannot delete old ./minirosetta_database/scoring/weights/beta_soft_rep.wts error: cannot delete old ./minirosetta_database/scoring/weights/gen_born.wts error: cannot delete old ./minirosetta_database/scoring/weights/ligand_soft_rep_gen_born.wts error: cannot delete old ./minirosetta_database/scoring/weights/score5.wts ERROR: Unable to open weights. Neither ./score5 nor minirosetta_databasescoring/weights/score5.wtsexist ERROR:: Exit from: ....srccorescoringScoreFunctionFactory.cc line: 57 called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 8.46439133129388 Granted credit 0 application version 1.07 Home \| Join \| About \| Participants \| Community \| Statistics
26) Message boards : Number crunching : Some pcs take forever to report...why? (Message 51592) Posted 24 Feb 2008 by M.L. Post: Is a mouse moving the mouse? Sorry, could not resist.
27) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51570) Posted 23 Feb 2008 by M.L. Post: Task ID 142014099 Name CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3279881_0 Workunit 129384114 Created 19 Feb 2008 13:55:02 UTC Sent 19 Feb 2008 13:55:16 UTC Received 23 Feb 2008 8:44:11 UTC Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) Computer ID 735230 Report deadline 29 Feb 2008 13:55:16 UTC CPU time 16 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: -840 bad seed ERROR:: Exit from: .dock_structure.cc line: 429 </stderr_txt> ]]> Validate state Invalid Claimed credit 0.0660766997366262 Granted credit 0 application version 5.82
28) Message boards : Number crunching : Problems with minirosetta version 1.+ (Message 51537) Posted 21 Feb 2008 by M.L. Post: My last few tasks! AMD 4800 dual core, W.XP. 141703246 129097012 18 Feb 2008 7:52:50 UTC 21 Feb 2008 8:14:14 UTC Over Success Done 8,955.58 37.50 23.35 141702622 129056759 18 Feb 2008 7:48:40 UTC 21 Feb 2008 6:48:22 UTC Over Success Done 12,047.23 50.45 35.71 141680190 129076351 18 Feb 2008 5:28:00 UTC 21 Feb 2008 6:48:22 UTC Over Success Done 11,533.53 48.30 35.71 141661569 129059218 18 Feb 2008 3:22:49 UTC 21 Feb 2008 4:07:42 UTC Over Success Done 7,383.70 30.92 16.47 141648691 129047997 18 Feb 2008 1:58:54 UTC 21 Feb 2008 0:27:22 UTC Over Success Done 10,625.06 44.49 31.64 141640562 129040790 18 Feb 2008 1:04:43 UTC 20 Feb 2008 23:48:57 UTC Over Success Done 10,178.97 42.62 29.26 141629359 129030416 17 Feb 2008 23:50:28 UTC 20 Feb 2008 21:14:11 UTC Over Success Done 10,408.38 43.59 30.87 141628647 129029811 17 Feb 2008 23:46:19 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 7,252.38 30.37 19.48 141620134 128909880 17 Feb 2008 22:50:23 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 8,741.13 36.60 24.68 141619408 129021418 17 Feb 2008 22:46:13 UTC 20 Feb 2008 16:51:08 UTC Over Success Done 13,753.23 57.59 41.11 All are Mini tasks..
29) Message boards : Number crunching : Problems with minirosetta version 1.+ (Message 51334) Posted 11 Feb 2008 by M.L. Post: Can see that i need to get an 'unknown' PC and never have a failure. Many thanks for your reply to all the problems.
30) Message boards : Number crunching : Problems with Rosetta version 5.82 (Message 51216) Posted 7 Feb 2008 by M.L. Post: According to the BOINC MANAGER I have a 5.82 task waiting to run--- Task ID 138895008 Name CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_3253661_0 Workunit 126479703 Created 6 Feb 2008 16:40:54 UTC Sent 6 Feb 2008 16:41:27 UTC Received --- Server state In Progress Outcome Unknown Client state New Exit status 0 (0x0) Computer ID 735230 Report deadline 16 Feb 2008 16:41:27 UTC CPU time 0 stderr out Validate state Initial Claimed credit 0 Granted credit 0 application version --- Is this correct? Not seen 5.82 for a long long time.
31) Message boards : Number crunching : Switch from W.XP to Linux. (Message 51145) Posted 3 Feb 2008 by M.L. Post: Sorry, but cannot run Linux with my current ISP. Thanks for all the comments.
32) Message boards : Number crunching : Switch from W.XP to Linux. (Message 50880) Posted 21 Jan 2008 by M.L. Post: Thanks for everyone's assistance. If I am feeling brave soon will try to D/L onto CD. Delivery times for an ordered CD seems a bit much but that is what they quote.
33) Message boards : Number crunching : Switch from W.XP to Linux. (Message 50875) Posted 21 Jan 2008 by M.L. Post: Thanks to Scsimodo and Astro. Seems Ubuntu is good for me so ordering a CD. {takes 2 or 3 months to arrive!}. Would be good to read a how to. Must say I did not realise that a dual boot is possible.I have read Astro's Linux vs Windows thread.{lucky it was a fairly new post}.
34) Message boards : Number crunching : Switch from W.XP to Linux. (Message 50872) Posted 21 Jan 2008 by M.L. Post: Getting less impressed with W XP by the day so seriously thinking of switching to Linux. Q is-- Which version is best for BOINC/Rosetta and are there any known probs or snags? AMD4800 64 dual core. mem = 3.64GB. VM = 4.68GB. {Sorry to young Billy.G}.
35) Questions and Answers : Unix/Linux : Windows to Linux (Message 50845) Posted 20 Jan 2008 by M.L. Post: Getting less impressed with W XP by the day so seriously thinking of switching to Linux. Q is-- Which version is best for BOINC/Rosetta and are there any known probs or snags? AMD4800 64 dual core. 4GB RAM Sorry to young Billy.G
36) Message boards : Number crunching : Problems with Rosetta version 5.93 (Message 50710) Posted 15 Jan 2008 by M.L. Post: Task ID 133439620 Name 1zpy__BOINC_DEFAULT_SYMM_FOLD_AND_DOCK-1zpy_-native__2519_34438_0 Workunit 121403622 Created 14 Jan 2008 11:42:55 UTC Sent 14 Jan 2008 11:43:40 UTC Received 15 Jan 2008 14:07:22 UTC Server state Over Outcome Success Client state Done Exit status 0 (0x0) Computer ID 717897 Report deadline 24 Jan 2008 11:43:40 UTC CPU time 6261.875 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3628558 ******************************************************************** Rosetta score is stuck or going too long. Watchdog is ending the run! Stuck at score -96.4799 for 900 seconds ******************************************************************** GZIP SILENT FILE: .xx1zpy.out </stderr_txt> ]]> Validate state Valid Claimed credit 25.9837414273405 Granted credit 20 application version 5.93 Home \| Join \| About \| Participants \| Community \| Statistics
37) Message boards : Number crunching : Problems with version 5.90/5.91 (Message 50248) Posted 1 Jan 2008 by M.L. Post: application Rosetta Beta created 19 Dec 2007 4:51:54 UTC name 1eyvA_BOINC_ABINITIO_VF-S25-9-S3-3--1eyvA-vf__2450_2786 canonical result 127731681 granted credit 21.94 minimum quorum 1 initial replication 1 max # of error/total/success tasks 1, 2, 1 Task ID click for details Computer Sent Time reported or deadline explain Server state explain Outcome explain Client state explain CPU time (sec) claimed credit granted credit 127731681 586364 19 Dec 2007 4:52:32 UTC 29 Dec 2007 11:32:54 UTC Over Success Done 10,586.59 21.94 28.41 129795554 510574 29 Dec 2007 4:53:10 UTC 1 Jan 2008 21:14:50 UTC Over Client error Aborted by user 0.00 0.00 --- This task already completed by another cruncher, received credits so I aborted. Just noticed that original was under 5.89 but 5.90 on my PC.
38) Questions and Answers : Web site : Result plots not working? (Message 50202) Posted 31 Dec 2007 by M.L. Post: New Year resolution for the Rosie people. Please please fix the 'reports and plots'. Not been working properly for months, usually -time out- very rarely I can get to see my results.
39) Message boards : Cafe Rosetta : LOGX (Message 50184) Posted 30 Dec 2007 by M.L. Post: Does anyone know the WU/Task capacity of LogX, and what happens when full, does it revert to zero or does it need a reinstall?
40) Message boards : Number crunching : Problems with version 5.90/5.91 (Message 50142) Posted 28 Dec 2007 by M.L. Post: Task ID 129178883 Name 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_254910_0 Workunit 117460024 Created 26 Dec 2007 7:04:33 UTC Sent 26 Dec 2007 7:10:52 UTC Received 28 Dec 2007 17:42:00 UTC Server state Over Outcome Success Client state Done Exit status 0 (0x0) Computer ID 510574 Report deadline 5 Jan 2008 7:10:52 UTC CPU time 13935.09 stderr out <core_client_version>5.10.30</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3231021 ******************************************************************** Rosetta score is stuck or going too long. Watchdog is ending the run! Stuck at score -106.099 for 900 seconds ******************************************************************** GZIP SILENT FILE: .xx1zpy.out </stderr_txt> ]]> Validate state Valid Claimed credit 57.7086028469705 Granted credit 77.8723488576529 application version 5.90

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