1)
Message boards :
Number crunching :
Bug in Rosetta Beta 5.85
(Message 49099)
Posted 27 Nov 2007 by Trey Post: I'm not sure exactly where you want us to post possible bugs in the app, but I seem to have a memory leak with the Rosetta Beta 5.85. When the work-unit was processing, my system showed the process using 168MB of memory and total memory utilization of 1.3GB. When I "suspended" it, my total memory utilization dropped to 800MB. Problems should be reported in the Number Crunching / Problems with 5.85 thread. |
2)
Message boards :
Number crunching :
XML stats not updating
(Message 48845)
Posted 19 Nov 2007 by Trey Post:
I'm no statswhore--I joined for the science. However, when we recently started getting repeated errors on WUs that were reported but not responded to, there were site update problems, and then the stats/homepage weren't working I started wondering if I was contributing my time and money (electricity isn't free) to the right effort... problems don't foster credibility. |
3)
Message boards :
Number crunching :
XML stats not updating
(Message 48798)
Posted 19 Nov 2007 by Trey Post: Remember that it's the weekend. The project staff doesn't sit at work 24/7. Fair enough... However, the 5.81 problems as reported in the requested thread have gone unattended for more than a few days. There seems to be a general lack of attention recently. |
4)
Message boards :
Number crunching :
XML stats not updating
(Message 48792)
Posted 18 Nov 2007 by Trey Post: Bueller?... Bueller?... Bueller? |
5)
Message boards :
Number crunching :
Problems with Rosetta version 5.81
(Message 48730)
Posted 16 Nov 2007 by Trey Post: I have yet another MFR_SYMM_FOLD_AND_DOCK_RELAX error: MFR_SYMM_FOLD_AND_DOCK_RELAX_GB1_mutant_2286_6276_1 Why are we still seeing these? These WUs have been reported to have high failure rates for several days now. |
6)
Message boards :
Number crunching :
Problems with Rosetta version 5.81
(Message 48717)
Posted 16 Nov 2007 by Trey Post: I have received validate errors on a couple of WUs -- apparently they have also produced errors for someone else as well:
|
7)
Message boards :
Number crunching :
Problems with Rosetta version 5.81
(Message 48587)
Posted 12 Nov 2007 by Trey Post: Yep, I've had several MFR_SYMM_FOLD_DOCK_AND_RELAX errors. For example:
|
8)
Message boards :
Number crunching :
Problems with Rosetta version 5.81
(Message 48581)
Posted 12 Nov 2007 by Trey Post: I got a Client/Compute error for result 119600589. The workunit it is for, MFR_SYMM_FOLD_AND_DOCK_RELAX_GB1_mutant_2286_166, apparently failed previously for someone else, but with a Validate error instead. |
9)
Message boards :
Number crunching :
Problems with Rosetta version 5.81
(Message 48404)
Posted 6 Nov 2007 by Trey Post: The home page news said: "Rosetta@home has been updated to version 5.81. This version contains small, but essential changes to the scientific protocols. For details, see this thread." I don't see any details... |
10)
Message boards :
Number crunching :
Problems with Rosetta version 5.80
(Message 48357)
Posted 4 Nov 2007 by Trey Post: I've had another failure on a different computer (running Windoze this time): 1n0u__TREEJUMP_ABRELAX_TOR_EQ_-1_PROB_.1_SAVE_ALL_OUT-1n0u_-_BARCODE__2244_8157_0 |
11)
Message boards :
Number crunching :
Problems with Rosetta version 5.80
(Message 48307)
Posted 3 Nov 2007 by Trey Post: I had a problem with 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0. I did just re-install my computer with openSUSE 10.3 (from 10.1) a few hours previous. However, WUs on the new O/S before/after the problem one seem OK. 2007-11-03 10:36:31 [---] Starting BOINC client version 5.10.21 for x86_64-pc-linux-gnu 2007-11-03 10:36:31 [---] log flags: task, file_xfer, sched_ops 2007-11-03 10:36:31 [---] Libraries: libcurl/7.15.5 OpenSSL/0.9.8c zlib/1.2.3 libidn/0.6.5 2007-11-03 10:36:31 [---] Executing as a daemon 2007-11-03 10:36:31 [---] Data directory: /home/trey/BOINC 2007-11-03 10:36:31 [---] Processor: 2 AuthenticAMD AMD Athlon(tm) 64 X2 Dual Core Processor 4200+ [Family 15 Model 43 Stepping 1] 2007-11-03 10:36:31 [---] Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt lm 3dnowext 3dnow pni lahf_lm cmp_ legacy 2007-11-03 10:36:31 [---] OS: Linux: 2.6.22.9-0.4-default 2007-11-03 10:36:31 [---] Memory: 1.97 GB physical, 4.01 GB virtual 2007-11-03 10:36:31 [---] Disk: 98.44 GB total, 89.08 GB free 2007-11-03 10:36:31 [---] Local time is UTC -5 hours 2007-11-03 10:36:31 [rosetta@home] URL: http://boinc.bakerlab.org/rosetta/; Computer ID: 647624; location: home; project prefs: default 2007-11-03 10:36:31 [---] General prefs: from http://www.worldcommunitygrid.org/ (last modified 2007-10-28 21:44:36) 2007-11-03 10:36:31 [---] Host location: home 2007-11-03 10:36:31 [---] General prefs: no separate prefs for home; using your defaults 2007-11-03 10:36:31 [---] Reading preferences override file 2007-11-03 10:36:31 [---] Preferences limit memory usage when active to 1007.34MB 2007-11-03 10:36:31 [---] Preferences limit memory usage when idle to 1813.21MB 2007-11-03 10:36:31 [---] Preferences limit disk usage to 1.86GB 2007-11-03 10:40:13 [rosetta@home] Restarting task CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2114224_0 using rosetta version 569 2007-11-03 10:40:13 [rosetta@home] Restarting task CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2115010_0 using rosetta version 569 2007-11-03 11:23:31 [rosetta@home] Computation for task CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2114224_0 finished 2007-11-03 11:23:31 [rosetta@home] Starting 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0 2007-11-03 11:23:31 [rosetta@home] Starting task 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0 using rosetta_beta version 580 2007-11-03 11:23:33 [rosetta@home] [file_xfer] Started upload of file CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2114224_0_0 2007-11-03 11:23:36 [rosetta@home] [file_xfer] Finished upload of file CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2114224_0_0 2007-11-03 11:23:36 [rosetta@home] [file_xfer] Throughput 42065 bytes/sec 2007-11-03 12:04:45 [rosetta@home] Deferring communication for 1 min 0 sec 2007-11-03 12:04:45 [rosetta@home] Reason: Unrecoverable error for result 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0 (process exited with code 1 (0x1, -255)) 2007-11-03 12:04:45 [rosetta@home] Computation for task 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0 finished 2007-11-03 12:04:45 [rosetta@home] Output file 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0_0 for task 2reb__TREEJUMP_ABRELAX_NOTOR-2reb_-_BARCODE__2241_85_0 absent 2007-11-03 12:04:45 [rosetta@home] Starting 1di2__TREEJUMP_ABRELAX_NOTOR-1di2_-_BARCODE__2241_71_0 2007-11-03 12:04:45 [rosetta@home] Starting task 1di2__TREEJUMP_ABRELAX_NOTOR-1di2_-_BARCODE__2241_71_0 using rosetta_beta version 580 2007-11-03 13:02:50 [rosetta@home] Computation for task CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2115010_0 finished 2007-11-03 13:02:50 [rosetta@home] Starting 1ogw__TREEJUMP_ABRELAX_NOTOR-1ogw_-_BARCODE__2241_674_0 2007-11-03 13:02:50 [rosetta@home] Starting task 1ogw__TREEJUMP_ABRELAX_NOTOR-1ogw_-_BARCODE__2241_674_0 using rosetta_beta version 580 2007-11-03 13:02:52 [rosetta@home] [file_xfer] Started upload of file CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2115010_0_0 2007-11-03 13:02:55 [rosetta@home] [file_xfer] Finished upload of file CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ubi_-_filters_1782_2115010_0_0 2007-11-03 13:02:55 [rosetta@home] [file_xfer] Throughput 43435 bytes/sec 2007-11-03 14:33:06 [rosetta@home] Computation for task 1di2__TREEJUMP_ABRELAX_NOTOR-1di2_-_BARCODE__2241_71_0 finished 2007-11-03 14:33:06 [rosetta@home] Starting 2reb__BARCODE_ABRELAX_NOTOR-2reb_-_BARCODE__2242_687_0 2007-11-03 14:33:06 [rosetta@home] Starting task 2reb__BARCODE_ABRELAX_NOTOR-2reb_-_BARCODE__2242_687_0 using rosetta_beta version 580 2007-11-03 14:33:09 [rosetta@home] [file_xfer] Started upload of file 1di2__TREEJUMP_ABRELAX_NOTOR-1di2_-_BARCODE__2241_71_0_0 2007-11-03 14:33:17 [rosetta@home] [file_xfer] Finished upload of file 1di2__TREEJUMP_ABRELAX_NOTOR-1di2_-_BARCODE__2241_71_0_0 2007-11-03 14:33:17 [rosetta@home] [file_xfer] Throughput 7927 bytes/sec |
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