Posts by Los Alcoholicos~Megaflix

1) Message boards : Number crunching : Largescale WU horror (Message 13870)
Posted 16 Apr 2006 by Los Alcoholicos~Megaflix
Post:
I've got one in my queue which has run for 14 hours and it has been completed succesfully. It was at 1.xx% for about 12 hours and then jumped to 80%. My queue-size is set for 1 hour per workunit. There's a simple way to see if your workunits hangs and that's checking the graphics.
2) Message boards : Rosetta@home Science : Rosetta@home page at Wikipedia (Message 12924)
Posted 1 Apr 2006 by Los Alcoholicos~Megaflix
Post:
Looks fantastic. That must have taken quite some time to rewrite. :)
3) Message boards : Number crunching : Rosetta adds 100,000th host! (Message 12913)
Posted 1 Apr 2006 by Los Alcoholicos~Megaflix
Post:
Of course the number of hosts will be increasing because of not being able to merge computers.
4) Message boards : Number crunching : BOINC service & P4's (Message 12732)
Posted 27 Mar 2006 by Los Alcoholicos~Megaflix
Post:
I also have errors in workunits when running Rosetta in Boinc as a service (see the Miscellaneous Work Unit Errors-thread here: http://boinc.bakerlab.org/rosetta/forum_thread.php?id=1106

It's a very specific error, always the same one. The boinc-service stops and the unit it's working on generates an error.
5) Message boards : Number crunching : Miscellaneous Work Unit Errors (Message 12731)
Posted 27 Mar 2006 by Los Alcoholicos~Megaflix
Post:
exit code -1073741819

I seem to have one computer which generates a lot of workunits with above error. Always the same error, but at different moments in the workunit. Maybe the project researchers could look into it. The computer's name in the computer list is Megaflix. It's got at least a 25% failure rate, but it's still climbing. I've installed a fresh Windows, with no software at all. Just for testing I installed only Boinc with Rosetta and it keeps producing the errors.

Leave applications in memory has been set to yes since the beginning, so that's not an issue. I had set the work units to run for 2 hours, but since it produced errors almost from the start I set it lower, to 1 hour. It decreased the number of errors just a little bit, but not much.

Might be handy in trying to find a cure for this error.

I'm willing to use the computer as a testing guinee pig if you want to...


Cab you attach this computer to RALPH. It might help to see those errors over there.


Boinc ran as a service on that computer, so I installed Boinc as a single user installation to see if I could find the source of the errors, while still finishing the few workunits left before connecting to Ralph. However, I haven't had a single error since I'm not running as a service anymore.

Re-installing it as a service does give back those errors. Maybe they could look into that? Might be a 'service-related' issue in Boinc? I'll still connect the computer to Ralph (running as a service) after finishing the Rosetta workunits.
6) Message boards : Number crunching : Miscellaneous Work Unit Errors (Message 12703)
Posted 25 Mar 2006 by Los Alcoholicos~Megaflix
Post:

Cab you attach this computer to RALPH. It might help to see those errors over there.


Ok. I'll finish the outstanding workunits of Rosetta and then I'll connect it to Ralph.
7) Message boards : Number crunching : Miscellaneous Work Unit Errors (Message 12675)
Posted 25 Mar 2006 by Los Alcoholicos~Megaflix
Post:
exit code -1073741819

I seem to have one computer which generates a lot of workunits with above error. Always the same error, but at different moments in the workunit. Maybe the project researchers could look into it. The computer's name in the computer list is Megaflix. It's got at least a 25% failure rate, but it's still climbing. I've installed a fresh Windows, with no software at all. Just for testing I installed only Boinc with Rosetta and it keeps producing the errors.

Leave applications in memory has been set to yes since the beginning, so that's not an issue. I had set the work units to run for 2 hours, but since it produced errors almost from the start I set it lower, to 1 hour. It decreased the number of errors just a little bit, but not much.

Might be handy in trying to find a cure for this error.

I'm willing to use the computer as a testing guinee pig if you want to...
8) Message boards : Rosetta@home Science : Comments/questions on Rosetta@home journal (Message 12010)
Posted 14 Mar 2006 by Los Alcoholicos~Megaflix
Post:

Hi James, we have been trying to do something along these lines-- every evening we are posting a new result in the "top predictions" section, with an acknowledgement of the finder, which I then explain in the journal. do you think we should instead post the prediction on the main page where it is more visible?


A rotating daily Top Prediction of the Day (TPD), similar to user of the day, would probably be neat. (I would not be opposed to replacing user of the day with top prediction of the day, but I am not sure how others would feel about that)

From these, you could select the Top Prediction of the Month (TPM).

If I somehow got the top prediction of the day, I would appreciate it being available to me forever in my result or profile page.

e.g.
Awarded the Top Prediction of the Day on DD-MM-YY for [protein name and link to graphics]


I like the idea of replacing the user of the day with the top predictions of the day. It would be a great improvement since many of the Users of the Day didn't actually have anything in their profile.
9) Message boards : Number crunching : Result was reported too late to validate ???????????? (Message 11868)
Posted 10 Mar 2006 by Los Alcoholicos~Megaflix
Post:
Click to see the workunit results and you'll see that the person who originally had the workunit didn't report it back within the deadline limit. The workunit was sent to you, but before you finished it before YOUR deadline, the other user sent it in and was granted the credit. Then you sent it in, but your's came in second and wasn't granted any credit.
10) Message boards : Rosetta@home Science : Comments/questions on Rosetta@home journal (Message 11612)
Posted 3 Mar 2006 by Los Alcoholicos~Megaflix
Post:
Even for a science noob like myself it's clear information. Thanks! I'll be reading the journal regularly.
11) Message boards : Number crunching : Report Maximum CPU Time Exceeded WU HERE (Message 10010)
Posted 27 Jan 2006 by Los Alcoholicos~Megaflix
Post:
7257012 5796373 20 Jan 2006 10:48:10 UTC 26 Jan 2006 16:19:23 UTC Over Client error Done 45,491.09

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=5796373
12) Message boards : Cafe Rosetta : Join 'Democratic Party' Team (Message 9042)
Posted 14 Jan 2006 by Los Alcoholicos~Megaflix
Post:
I see you democrats continue to knowingly lie through your teeth. You try to shove your lying down everyones throuts. You must think people are really stupid not to know its federal funding that will not be used and to deliberrately lie about what Stem cell research is showing promise and what stem cell research is pie in the sky. Of course you lie about it along with other things because the truth does not serve your hate. Federal money will not be used but any private enterprise can fund it. Absolutely no mention from you about real provern effects in Adult stem cells being conducted know. You want federal money poured down a rat hole where no science shows promise yet.


That's not a nice way to welcome other people to the project you know. You may not agree on politics, that's okay, but please be kind for each other on the forum.
13) Message boards : Cafe Rosetta : Dutch Power Cows! #1 in dc-computing :) (Message 6307)
Posted 15 Dec 2005 by Los Alcoholicos~Megaflix
Post:
Congratulations on the milestone you're about to reach. My wife is 1/2 Dutch(No, that doesn't mean you can have 1/4 our computers crunching for you.)

Keep crunching from your friends at TPR.


how about 1/8 then? :p just kidding!

Not bad for such a small country to be in the top!
14) Message boards : Cafe Rosetta : Dutch Power Cows! #1 in dc-computing :) (Message 5291)
Posted 6 Dec 2005 by Los Alcoholicos~Megaflix
Post:
We'll hit the top 3 this year I hope :)
15) Message boards : Rosetta@home Science : Graphics (Message 3913)
Posted 22 Nov 2005 by Los Alcoholicos~Megaflix
Post:
I've got my first graphic workunit now :) i saw it in the queue, so I suspended all other workunits, just to see the graphic one :)

looks amazing, although I haven't got a clue what exactly I'm looking at in the scientific way.


Well, this reply will do one of two things. It'll make me look like a candidate for David Baker's team, or it'll make me look like a complete idiot. :)

It's also important to note that all I've seen is the graphic above posted by Jack, so I'm really trying to interpret that.

That being said, my understanding is that the long colored "string" that wiggles round is the protein we care about at the moment. It's wiggling round, and as it does so the two graphs at the side change.

One shows the energy that's contained in the molecule, we'd like to get that as low as possible. The other shows the RMSD, which I'm not sure exactly what that stands for. My GUESS, and I must emphsize that this is only an educated guess, is that it stands for Root Mean Square Distance. Whatever the case, I believe that it's a metric for how spread out (?) the molecule is. Again, smaller is better.

Each time we get a pair of positions in those two graphs, they map to the third graph, and add a spot. The ideal situation is to get a spot as close as possible to the lower left corner, because that's where the molecule will land in reality. If we get there, then we should have found the shape that this molecule assumes, and doing that is a large part of what we're after.

OK, so that is my (short) paper on the subject, I'm curious to know how it'll get graded. :)


A+ by me. I've got one question though, in the RMSD square there's nothing, it's empty. And the box marked Native has nothing in it, just a question mark. Is it because the work unit is just at 20%?
16) Message boards : Rosetta@home Science : Graphics (Message 3875)
Posted 22 Nov 2005 by Los Alcoholicos~Megaflix
Post:
I've got my first graphic workunit now :) i saw it in the queue, so I suspended all other workunits, just to see the graphic one :)

looks amazing, although I haven't got a clue what exactly I'm looking at in the scientific way.
17) Message boards : Rosetta@home Science : Hiding the Icon in the task bar? (Message 3697)
Posted 19 Nov 2005 by Los Alcoholicos~Megaflix
Post:
Does it still automatically download new work units and upload back the finished ones? Or do you have to do it yourself using the Boinc Manager?



Yes it does. Boinc Manager (boincmgr.exe) is just a gui front end (like Boinc View). Boinc.exe is the actual client. In fact, if you have open your task manager you'll notice that if you start boincmgr.exe it will start a boinc.exe process. So really all I'm doing is starting boinc.exe manually. Once boinc.exe is running I can use boinc manager (or boinc view) to manager my client.

Note: if you start boinc.exe manually, you should use the -redirectio flag. Also, when you start it manually a cmd/dos window pops up, if you use -redirectio you can close it, otherwise without the -redirectio flag all trace output will be sent to the cmd/dos window.


no way to keep it from popping up a display? So installing the client as a service is the only way to keep it from popping up or displaying stuff...
18) Message boards : Rosetta@home Science : Hiding the Icon in the task bar? (Message 3693)
Posted 19 Nov 2005 by Los Alcoholicos~Megaflix
Post:
There's no specific option to just install a command line bonic client.

What I do is install the client in Single user mode (I'm the only one using my computers), but I don't have it start at windows start up. I then create a short cut which starts boinc.exe not boincmgr.exe, and then I put that shortcut in my startup directory.

It's not a perfect solution, but it works for me.


Does it still automatically download new work units and upload back the finished ones? Or do you have to do it yourself using the Boinc Manager?
19) Message boards : Number crunching : Client Error (Message 3592)
Posted 18 Nov 2005 by Los Alcoholicos~Megaflix
Post:
Many of your errors do look to be a different kind though:
"CreateProcess() failed - The system cannot find the file specified. (0x2)"


could be some of the early graphic beta units that missed the glut32.dll? (not sure, never had one of those myself)


Can't find the topic at the moment, but yes. It is now included. That happens when it's still beta testing.
20) Message boards : Cafe Rosetta : Find-a-Drug Refugees (Message 3451)
Posted 16 Nov 2005 by Los Alcoholicos~Megaflix
Post:
Well it's nice to see my bud's here.
Let's Rock.....:D


Indeed, RT! Onward and Upward!

DPC : Don't let us get to far ahead before you jump in. :)

Scott


No worries, we'll jump over you in no time ;)


Next 20



©2024 University of Washington
https://www.bakerlab.org