Posts by P . P . L .

21) Message boards : Number crunching : Minirosetta 3.52 (Message 78498) Posted 26 Jul 2015 by P . P . L . Post: Short answer to both NO.
22) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 78497) Posted 26 Jul 2015 by P . P . L . Post: NO new tasks again! Total queued jobs: 0
23) Message boards : Number crunching : R@H Scientists/Coders: An analysis of the Rosetta binaries... (Message 78378) Posted 30 Jun 2015 by P . P . L . Post: Hi David. I have a Haswell R Xeon running Ubuntu 14.04lts x64, I could put it on to Ralph for any testing you might do if it's any help.
24) Message boards : Number crunching : Minirosetta 3.59 (Message 78315) Posted 16 Jun 2015 by P . P . L . Post: Yea, the graphics window finally works under Ubuntu after how many years I've lost count. As for the tasks, I haven't seen any problems with the ones running on my rigs.
25) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 78301) Posted 14 Jun 2015 by P . P . L . Post: Hi. I'm having problems getting new tasks. Ready to send 37
26) Message boards : Number crunching : Minirosetta 3.54 (Message 78015) Posted 10 Mar 2015 by P . P . L . Post: Still no graphics for Linux / Ubuntu after many years I think! :(
27) Message boards : Number crunching : Two consistent and persistent errors (Message 77871) Posted 29 Jan 2015 by P . P . L . Post: Hi Erik. I had a quick look at your erred tasks and they all look to be of the rb__SAVE__ALL__OUT type, I have been aborting those for many months because they where always erring on my rigs as well and no one has fixed the problem, I did report it. And I only run tasks here for 4hrs.
28) Message boards : Number crunching : Minirosetta 3.52 (Message 77836) Posted 17 Jan 2015 by P . P . L . Post: Hi. I just checked why my RAC has gone down, it seems to be because of these type of tasks are all getting Validate errors. For my rigs and the others that have done the same tasks. This is just a few that I found of mine. ======================================= svm_above_15_v2_1Q9BA_abinitio_SAVE_ALL_OUT_236779_94 svm_both_v2_1M8AA_abinitio_SAVE_ALL_OUT_235545_52 svm_above_15_v2_1OKSA_abinitio_SAVE_ALL_OUT_236783_53 svm_both_3AUBA_abinitio_SAVE_ALL_OUT_235153_97
29) Message boards : Number crunching : Pending credit (Message 77617) Posted 28 Oct 2014 by P . P . L . Post: All my pending have cleared now. Thanks.
30) Message boards : Number crunching : Pending credit (Message 77610) Posted 28 Oct 2014 by P . P . L . Post: Hi. I've got ten waiting for the validation as well going back to the 21/9 plus others, I don't know if the validator is having problems keeping up with all the new people or if there another problem somewhere.? The server page looks a bit funny at the moment to or it might just be firefox.
31) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77464) Posted 15 Sep 2014 by P . P . L . Post: Hi Sid. I had a bit of a problem to with very slow downloads yesterday, they didn't get an error just slowed down to just about stopping.
32) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77129) Posted 30 Jul 2014 by P . P . L . Post: Hi. Just saw on the news that they had a burst water main at the uni, caused a lot of flooding that might be the cause of this problem. Not sure thou!
33) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77074) Posted 29 Jul 2014 by P . P . L . Post: This is what boinc is showing in messages now. Tue 29 Jul 2014 15:13:08 EST \| rosetta@home \| Started upload of tube9_25_A_tube9_25_B_patchdock_split_00_140727_SAVE_ALL_OUT__179884_95_0_0 Tue 29 Jul 2014 15:15:08 EST \| \| Project communication failed: attempting access to reference site Tue 29 Jul 2014 15:15:08 EST \| rosetta@home \| Temporarily failed upload of tube9_25_A_tube9_25_B_patchdock_split_00_140727_SAVE_ALL_OUT__179884_95_0_0: transient HTTP error Tue 29 Jul 2014 15:15:08 EST \| rosetta@home \| Backing off 3 min 7 sec on upload of tube9_25_A_tube9_25_B_patchdock_split_00_140727_SAVE_ALL_OUT__179884_95_0_0 Tue 29 Jul 2014 15:15:10 EST \| \| Internet access OK - project servers may be temporarily down.
34) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77073) Posted 29 Jul 2014 by P . P . L . Post: I'm not able to upload or download as well.
35) Message boards : Number crunching : Minirosetta 3.52 (Message 76926) Posted 30 Jun 2014 by P . P . L . Post: Hi. Had these two fail after about 2hrs.30min. http://boinc.bakerlab.org/rosetta/workunit.php?wuid=608458156 pd1_graftsheet_41limit_1L3E2L3E2L3E3L13H3L3E1L_1-2.P.0_SAVE_ALL_OUT__171170_1_1 -------------------------------------------------------------------------------- http://boinc.bakerlab.org/rosetta/workunit.php?wuid=608509726 pd1_graftsheet_41limit_1L4E3L4E3L4E2L15H1L_1-2.P.0_SAVE_ALL_OUT__171149_1_0 # cpu_run_time_pref: 14400 ====================================================== DONE :: 1 starting structures 8514.78 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 6.80565e+38 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish terminate called after throwing an instance of 'std::bad_alloc' what(): St9bad_alloc </stderr_txt> -------------------------------------------------------------------- # cpu_run_time_pref: 14400 ====================================================== DONE :: 1 starting structures 8480.43 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 6.80565e+38 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish terminate called after throwing an instance of 'std::bad_alloc' what(): St9bad_alloc </stderr_txt>
36) Message boards : Number crunching : Minirosetta 3.52 (Message 76847) Posted 17 Jun 2014 by P . P . L . Post: Hi. I've had a few of these that got validate errors after either a couple of hours or a few minutes. Tc761_jump_hybrid_1.0_169577_3670_0 ERROR: Warning: can't open file hybrid_jumping/t000_.fasta! ERROR:: Exit from: src/core/sequence/util.cc line: 148 ERROR: Warning: can't open file hybrid_jumping/t000_.fasta! ERROR:: Exit from: src/core/sequence/util.cc line: 148 ====================================================== DONE :: 99 starting structures 1201 cpu seconds This process generated 99 decoys from 99 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish
37) Message boards : Number crunching : Minirosetta 3.52 (Message 76822) Posted 11 Jun 2014 by P . P . L . Post: Had more T0763 fail with this error as well. ERROR: HybridizeFoldtreeDynamic: failed to build fold tree from cuts and jumps ERROR:: Exit from: src/protocols/hybridization/HybridizeFoldtreeDynamic.cc line: 676 SIGSEGV: segmentation violation Stack trace (20 frames):
38) Message boards : Number crunching : Minirosetta 3.52 (Message 76821) Posted 11 Jun 2014 by P . P . L . Post: This task erred just now. http://boinc.bakerlab.org/rosetta/workunit.php?wuid=604963960 T0763_jump_13_70_71_90_hybrid_withlookback_169118_137_0 Watchdog active. SIGSEGV: segmentation violation Stack trace (20 frames): [0xbb009c7] [0xb7739400] [0xb3d01ce] [0xb449439] [0xa06a109] [0xa0698a3] [0xa048b2e] [0x9823d96] [0x982475a] [0x9826b8e] [0x87aee21] [0x87e57d9] [0x9da5fe2] [0x9da837e] [0x9f99f2d] [0xa017d65] [0xa015595] [0x8055314] [0xbb91f88] [0x8048131] Exiting... </stderr_txt>
39) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 76795) Posted 2 Jun 2014 by P . P . L . Post: Hi SBF-GODS-STONE. You seem to be mixing up cpu cashe with system ram, your system is showing about 3 gigabyte of ram ( Memory 2989.52 MB ). Rosetta can use up to and over 1 gig of ram per task/wu sometimes, there is no way that can fit in the cpu's cashe. You said - This CPU chip has for L2 and L3 cashe storage 1 and 2 gig's of memory on the chip. ==================================================== See spec's for your cpu from CPU-World site. AMD FX-4350 Frequency: 4200 MHz Turbo frequency: 4300 MHz Level 1 cache size: 2 x 64 KB shared instruction caches 4 x 16 KB data caches Level 2 cache size: 2 x 2 MB shared exclusive caches Level 3 cache size: 8 MB shared cache Memory controller: The number of controllers: 1 Memory channels: 2 Supported memory: DDR3-1866 ====================================================== i.m.h.o. - Sorry you need more RAM!
40) Message boards : Number crunching : Minirosetta 3.50 (Message 76762) Posted 25 May 2014 by P . P . L . Post: Hi Miklos,M I just had a look at 2 of your rigs the i7-4960X and FX-8150 they both have # cpu_run_time_pref: 86400 seconds you selected which is about 24hrs run time, so what's the problem? If the W.U. can finish faster then your selected run time for some reason like hitting (99)decoys they will but otherwise they will run the full length of time.

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