Posts by Tomcat雄猫

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107275) Posted 12 Oct 2022 by Tomcat雄猫 Post: Oh well, at least the rest of the server still works. Here's hoping the validator gets fully fixed before the weekend.
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107274) Posted 12 Oct 2022 by Tomcat雄猫 Post: We're back at over 2m, up from a bit over 1.91M some time yesterday. Looks like I jinxed it, oops.
3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107262) Posted 12 Oct 2022 by Tomcat雄猫 Post: Your name is in English and Chinese, do you consider yourself Canadian? Yes, I do consider myself Canadian. BTW, looks like the validator is back online. "Workunits waiting for validation" is now down to 1963435 from a bit over 2M.
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107240) Posted 11 Oct 2022 by Tomcat雄猫 Post: "Workunits waiting for validation: 1607599" I guess we'll have to wait after Thanksgiving. I had to look up what that was. It's in November? Ah, Thanksgiving day is today where I live. Second Monday of October. I'm going to assume there is no holiday today where Rosetta is based at. Odd, from Google it's some kind of thanks for a harvest, I thought it would be fairly fixed (Like Easter, first Sunday in the month or whatever it is). Here we are, USA/Canada November 24: https://www.calendar-12.com/holidays/thanksgiving/2022 It's celebrated in other countries? Hang on, aren't you Canadian? Yes, I'm in Ontario, Canada. Thanksgiving is the second Monday every October here.
5) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107225) Posted 10 Oct 2022 by Tomcat雄猫 Post: "Workunits waiting for validation: 1607599" I guess we'll have to wait after Thanksgiving. I had to look up what that was. It's in November? Ah, Thanksgiving day is today where I live. Second Monday of October. I'm going to assume there is no holiday today where Rosetta is based at.
6) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107223) Posted 10 Oct 2022 by Tomcat雄猫 Post: "Workunits waiting for validation: 1607599" I guess we'll have to wait after Thanksgiving.
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107199) Posted 9 Oct 2022 by Tomcat雄猫 Post: Oh, look! A validated task! 11mer_af_hallucinated_23_45_best_SAVE_ALL_OUT_2919280_72_1 Only 114 more to go!
8) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107153) Posted 8 Oct 2022 by Tomcat雄猫 Post: Bad batch of RB tasks, perhaps? rb_10_07_420543_416291_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_03_06_2919833_26_0 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_10_07_420543_416291_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_10_07_420543_416291_ab_t000__robetta.zip -frag3 rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -fragA rb_10_07_420543_416291_ab_t000__robetta.200.6mers.index.gz -fragB rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2145106 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> rb_09_03_406077_401241__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_2917054_4409_1 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> (unknown error) - exit code 3221225477 (0xc0000005)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting @flags_rb_09_03_406077_401241__t000__0_C1_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip input_rb_09_03_406077_401241__t000__0_C1_robetta.zip -max_registry_shift 3 -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1826313 Using database: database_357d5d93529_n_methylminirosetta_database Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0000000000000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 7.9.0 Dump Timestamp : 10/08/22 10:00:20 Install Directory : C:Program FilesBOINC Data Directory : B:BOINC Project Symstore : https://boinc.bakerlab.org/rosetta/symstore LoadLibraryA( B:BOINCdbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( B:BOINCsymsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCsrcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: B:BOINCslots5;B:BOINCprojectsboinc.bakerlab.org_rosetta;srvB:BOINCprojectsboinc.bakerlab.org_rosettasymbolshttp://msdl.microsoft.com/download/symbols;srvB:BOINCprojectsboinc.bakerlab.org_rosettasymbolshttps://boinc.bakerlab.org/rosetta/symstore
9) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 107115) Posted 7 Oct 2022 by Tomcat雄猫 Post: [quote]... SSDs suck, I use NVME. You might benefit from a good google search on NVMe. It's not what you seem to think it is. I know exactly what they are and have several, they're much faster. An SSD over SATA is far too slow, because of the SATA. Are you from the Android forum? Well, clearly you do not know, or you would not be suggesting that NVMe is some kind of storage device. It is not. NVMe is a host controller interface specification, the same as SATA. Thus, one might well imagine that some day, we might also see HDDs with a NVMe interface, just as we now have SSDs with a NVMe interface. I'm not interested in your OCD. I know perfectly well how all disks work and have been in the business since 1997. Please learn basic English. Here is a helper for you: Hard disk/rust spinner = mechanical drive connected via SATA, previously IDE. Now gets up to about 170MB/s. SSD = solid state drive connected via SATA, limited by SATA to about 550MB/s. NVME = solid state drive connected directly to the motherboard using PCI express, gets up to 7000MB/s. I prefer 7000 to 550. SSD just means solid state drive, there is nothing that says SSDs refers only to SSDs connected via a SATA interface. Both SATA SSDs and NVMe SSDs are SSDs. That being said, Rosetta has not historically required a second computer to validate WUs. The "Server status" page claims the validator to be running. Methinks something is up with the server.
10) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106726) Posted 7 Aug 2022 by Tomcat雄猫 Post: I have 7 Rosetta Python tasks, but Rosetta is taking up a whopping 61.77 GB of disk space. Is this normal?
11) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105796) Posted 2 Apr 2022 by Tomcat雄猫 Post: These appear to have similar errors: 15AAflpp_YIL_15AA971_000002_extract_A_SAVE_ALL_OUT_2913908_715_0 15AAflpp_YIL_15AA4955_000016_extract_A_SAVE_ALL_OUT_2913889_715_0 15AAflpp_YIL_15AA2090_000024_extract_A_SAVE_ALL_OUT_2913801_970_1 15AAflpp_YIL_15AA1454_000024_extract_A_SAVE_ALL_OUT_2913774_923_0 11AA_YIL_YIL_11mer635_000106_extract_A_SAVE_ALL_OUT_2913700_772_0 11AA_YIL_YIL_11mer2773_000024_extract_A_SAVE_ALL_OUT_2913616_715_0 11AA_YIL_YIL_11mer1062_000026_extract_A_SAVE_ALL_OUT_2913445_772_0
12) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105795) Posted 2 Apr 2022 by Tomcat雄猫 Post: Anyone noticed a high error rate in the recent batch of workunits? They fail within seconds. The stderr outputs are really long. An example: 11AA_YIL_YIL_11mer1062_000026_extract_A_SAVE_ALL_OUT_2913445_772_0 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> (unknown error) - exit code 3221225477 (0xc0000005)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @11AA_YIL_YIL_11mer1062_000026_extract_A.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2488406 Using database: database_357d5d93529_n_methylminirosetta_database Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x000000000000000F Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 7.9.0 Dump Timestamp : 04/01/22 11:59:52 Install Directory : C:Program FilesBOINC Data Directory : A:BOINC Project Symstore : https://boinc.bakerlab.org/rosetta/symstore LoadLibraryA( A:BOINCdbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( A:BOINCsymsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( A:BOINCsrcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( A:BOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: A:BOINCslots1;A:BOINCprojectsboinc.bakerlab.org_rosetta;srvA:BOINCprojectsboinc.bakerlab.org_rosettasymbolshttp://msdl.microsoft.com/download/symbols;srvA:BOINCprojectsboinc.bakerlab.org_rosettasymbolshttps://boinc.bakerlab.org/rosetta/symstore ModLoad: 0000000097630000 00000000057ef000 A:BOINCprojectsboinc.bakerlab.org_rosettarosetta_4.20_windows_x86_64.exe (-exported- Symbols Loaded) Linked PDB Filename : C:cygwin64homeboinc4.17RosettamainsourceideVisualStudiox64BoincReleaserosetta_4.20_windows_x86_64.pdb ModLoad: 000000005e760000 0000000000209000 C:WINDOWSSYSTEM32ntdll.dll (6.2.22000.527) (-exported- Symbols Loaded) Linked PDB Filename : ntdll.pdb File Version : 10.0.22000.434 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.434 ModLoad: 000000005c600000 00000000000bd000 C:WINDOWSSystem32KERNEL32.DLL (6.2.22000.434) (-exported- Symbols Loaded) Linked PDB Filename : kernel32.pdb File Version : 10.0.22000.434 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.434 ModLoad: 000000005bee0000 0000000000374000 C:WINDOWSSystem32KERNELBASE.dll (6.2.22000.527) (-exported- Symbols Loaded) Linked PDB Filename : kernelbase.pdb File Version : 10.0.22000.434 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.434 ModLoad: 000000005e010000 000000000006f000 C:WINDOWSSystem32WS2_32.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : ws2_32.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005e5e0000 0000000000120000 C:WINDOWSSystem32RPCRT4.dll (6.2.22000.434) (-exported- Symbols Loaded) Linked PDB Filename : rpcrt4.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005dc70000 00000000001ac000 C:WINDOWSSystem32USER32.dll (6.2.22000.282) (-exported- Symbols Loaded) Linked PDB Filename : user32.pdb File Version : 10.0.22000.556 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.556 ModLoad: 000000005bd90000 0000000000026000 C:WINDOWSSystem32win32u.dll (6.2.22000.556) (-exported- Symbols Loaded) Linked PDB Filename : win32u.pdb File Version : 10.0.22000.556 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.556 ModLoad: 000000005d0b0000 0000000000029000 C:WINDOWSSystem32GDI32.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : gdi32.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005c260000 0000000000112000 C:WINDOWSSystem32gdi32full.dll (6.2.22000.527) (-exported- Symbols Loaded) Linked PDB Filename : gdi32full.pdb File Version : 10.0.22000.527 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.527 ModLoad: 000000005c4f0000 000000000009d000 C:WINDOWSSystem32msvcp_win.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : msvcp_win.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005bdc0000 0000000000111000 C:WINDOWSSystem32ucrtbase.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : ucrtbase.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005d270000 00000000000ae000 C:WINDOWSSystem32ADVAPI32.dll (6.2.22000.434) (-exported- Symbols Loaded) Linked PDB Filename : advapi32.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005c890000 00000000000a3000 C:WINDOWSSystem32msvcrt.dll (7.0.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : msvcrt.pdb File Version : 7.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 7.0.22000.1 ModLoad: 000000005ce50000 000000000009e000 C:WINDOWSSystem32sechost.dll (6.2.22000.556) (-exported- Symbols Loaded) Linked PDB Filename : sechost.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005de20000 0000000000031000 C:WINDOWSSystem32IMM32.DLL (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : imm32.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005ad50000 0000000000018000 C:WINDOWSSYSTEM32kernel.appcore.dll (6.2.22000.71) (-exported- Symbols Loaded) Linked PDB Filename : Kernel.Appcore.pdb File Version : 10.0.22000.71 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.71 ModLoad: 0000000059600000 0000000000034000 C:WINDOWSSYSTEM32ntmarta.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : ntmarta.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 00000000536a0000 0000000000221000 C:WINDOWSSYSTEM32dbghelp.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : dbghelp.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 00000000529f0000 000000000000a000 C:WINDOWSSYSTEM32version.dll (6.2.22000.1) (-exported- Symbols Loaded) Linked PDB Filename : version.pdb File Version : 10.0.22000.1 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.1 ModLoad: 000000005bd10000 000000000007f000 C:WINDOWSSystem32bcryptPrimitives.dll (6.2.22000.376) (-exported- Symbols Loaded) Linked PDB Filename : bcryptprimitives.pdb File Version : 10.0.22000.376 (WinBuild.160101.0800) Company Name : Microsoft Corporation Product Name : Microsoft® Windows® Operating System Product Version : 10.0.22000.376 * Dump of the Process Statistics: * - I/O Operations Counters - Read: 5002, Write: 634, Other 10386 - I/O Transfers Counters - Read: 14509401, Write: 14070, Other 6514 - Paged Pool Usage - QuotaPagedPoolUsage: 319504, QuotaPeakPagedPoolUsage: 319640 QuotaNonPagedPoolUsage: 7064, QuotaPeakNonPagedPoolUsage: 10296 - Virtual Memory Usage - VirtualSize: 83255296, PeakVirtualSize: 596676608 - Pagefile Usage - PagefileUsage: 83255296, PeakPagefileUsage: 83255296 - Working Set Size - WorkingSetSize: 109973504, PeakWorkingSetSize: 109973504, PageFaultCount: 27392 * Dump of thread ID 19856 (state: Initialized): * - Information - Status: Base Priority: Normal, Priority: Normal, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 0.000000 - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x000000000000000F - Registers - rax=000000000000003a rbx=0000000009846110 rcx=000000000a25ccb0 rdx=000000000a33cde8 rsi=000000000000000b rdi=000000000a25ccb0 r8=000000000000003a r9=0000000000000421 r10=000000009b1d6e80 r11=0000000005f45480 r12=0000000097630000 r13=0000000005f5fb50 r14=0000000005f45be0 r15=000000000048b215 rip=000000000000000f rsp=0000000005f454f8 rbp=0000000000000000 cs=0033 ss=002b ds=002b es=002b fs=0053 gs=002b efl=00010202 - Callstack - ChildEBP RetAddr Args to Child 05f454f0 97b0831c 00000000 9b1d6d60 9b1d6e80 05f454d8 !+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '0000000f' 05f45520 97ac935d 09846110 05f455c0 05f45d80 97ab355d rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97b0831c' 05f45550 9ac37f10 9bb20150 05f5fb50 00000000 5e7992d9 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97ac935d' 05f45580 97ab39e8 05f5fb50 9cbca32c 05f45690 00000000 rosetta_4.20_windows_x86_64!xmlValidateNotationDecl+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '9ac37f10' 05f455f0 5e8086ef 00000000 05f45b90 05f46270 05f46270 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97ab39e8' 05f45620 5e795aea 05f46270 97630000 97abb215 9cbca32c ntdll!__chkstk+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '5e8086ef' 05f45d70 5e8076fe 00000010 097102a4 9b2aa450 09711080 ntdll!RtlRestoreContext+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '5e795aea' 05f46470 97d73e2b fffffffe 0db913f8 ffffffff 97d818c5 ntdll!KiUserExceptionDispatcher+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '5e8076fe' 05f464c0 97d83690 9b2aa3a0 0db91150 9b2aa3a0 05f465b9 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d73e2b' 05f465f0 97e99ee8 0d4e43a8 0de8b4d0 0db91150 0de8b4d0 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d83690' 05f471a0 97e34b6c 0df76640 05f47269 09830000 5e788c6a rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97e99ee8' 05f473a0 97e3488e 05f47488 00000000 05f47670 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97e34b6c' 05f47500 97d93da1 05f47678 00000000 09845a90 05f47740 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97e3488e' 05f478c0 97d99f08 05f47c10 05f47c10 05f47c10 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d93da1' 05f47f10 97d984db 09f27160 05f47f70 09e24cc0 09e24cc0 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d99f08' 05f48070 97d01fb7 00000000 05f48180 09e24cc0 05f48380 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d984db' 05f481e0 97d057a6 00000005 97aa5190 09ddecd0 09ddecd0 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d01fb7' 05f48250 97d056cc 05f48558 05f483c9 05f48558 09e24cc0 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d057a6' 05f48300 97dcb6f5 05f48558 05f48841 00000000 97ac75e8 rosetta_4.20_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97d056cc' 05f48420 97dca592 00000005 05f48558 05f48730 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97dcb6f5' 05f484f0 97dcad06 0dc5f0e0 00000000 05f48e10 09711080 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97dca592' 05f48690 982271a3 05f48730 05f48e10 ffffff01 97ab3e73 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97dcad06' 05f48980 98229d09 00000000 00000001 05f48a90 05f48e10 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '982271a3' 05f48d10 98222f8a 05f48d50 05f48e10 0d3039f0 09df8890 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '98229d09' 05f48d70 9843cc70 05f48e10 05f49538 09ddecd0 00000000 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '98222f8a' 05f49500 9843c6e4 0deee3b0 0de850f0 9caa5cc0 97aa75a6 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '9843cc70' 05f49560 9844603e 05f49650 0deee0e0 05f49670 05f49dc0 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '9843c6e4' 05f49ce0 984456d4 de34960d de34913d 9ca17f70 98466cb4 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '9844603e' 05f49d70 9844578e 00000005 05f4a318 09df8890 00000001 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '984456d4' 05f49f10 97ab081d 0a117820 0a117820 09df8890 09847401 rosetta_4.20_windows_x86_64!cppdb::backend::statement::cache+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '9844578e' 05f5fb40 97abb215 00000000 00000000 9c9dccf8 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97ab081d' 05f5fb80 5c6154e0 00000000 00000000 00000000 00000000 rosetta_4.20_windows_x86_64!xmlParserInputRead+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '97abb215' 05f5fbb0 5e76485b 00000000 00000000 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '5c6154e0' 05f5fc30 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '5e76485b' * Dump of thread ID 32761 (state: Initialized): * - Information - Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 6.000000, User Time: 0.000000, Wait Time: 1921636864.000000 - Registers - rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000 r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000 r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000 cs=0000 ss=0000 ds=0000 es=0000 fs=0000 gs=0000 efl=00000000 - Callstack - ChildEBP RetAddr Args to Child (-nosymbols- PC == 0) 00000000 00000000 00000000 00000000 00000000 00000000 !+0x0 * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]>
13) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105468) Posted 16 Mar 2022 by Tomcat雄猫 Post: I haven't seen a working (on Windows) Rosetta 4.20 in ages. These preetham tasks appear to have problems: preetham_gen_16837_0001_0001_0_SAVE_ALL_OUT_2911317_735_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @preetham_gen_16837_0001_0001_0.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1704144 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: ......srcprotocolscyclic_peptide_predictSimpleCycpepPredictApplication.cc line: 2264 BOINC:: Error reading and gzipping output datafile: default.out 14:08:09 (12636): called boinc_finish(1) </stderr_txt> ]]>
14) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105039) Posted 20 Feb 2022 by Tomcat雄猫 Post: Which leads me to the question I posted. Whats the difference? IIRC, Rosetta 4.20 is the regular modern Rosetta that requires a 64bit OS and CPU. 4.21 was released specifically for older systems on 32 bit. I remember there being talk about phasing out 32 bit Rosetta tasks, I think the consensus was that that probably wasn't a good idea so 4.21 was released. I do not know about any other differences. In other words, 4.20 requires a 64 bit system, 4.21 requires a 32 bit system. Anyways, "Intel x86 compatible" has nothing to do with Intel vs AMD, the same way "AMD x86_64 compatible" has nothing to do with AMD. They basically mean garden variety X86-32 and X86-64, respectively.
15) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 104982) Posted 19 Feb 2022 by Tomcat雄猫 Post: Welp, 4 hours later, this one also crashed: rb_02_16_213027_208958_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_09_2906555_51_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_02_16_213027_208958_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213027_208958_ab_t000__robetta.zip -frag3 rb_02_16_213027_208958_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213027_208958_ab_t000__robetta.200.9mers.index.gz -fragB rb_02_16_213027_208958_ab_t000__robetta.200.6mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3484950 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> Same issue with all the other borked rb_ tasks. I sure hope they catch this and fix it soon. Wait, it's the weekend... This is fine, I'm fine, there's nothing infuriating about this at all... Nothing at all.
16) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 104976) Posted 19 Feb 2022 by Tomcat雄猫 Post: SO! MANY! ERRORS! First off are the known bad movingstub tasks that crash almost instantly. Then there are the broken rb_ tasks that don't crash as fast. rb_02_16_213031_208962_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_04_2906559_35_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_02_16_213031_208962_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213031_208962_ab_t000__robetta.zip -frag3 rb_02_16_213031_208962_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213031_208962_ab_t000__robetta.200.4mers.index.gz -fragB rb_02_16_213031_208962_ab_t000__robetta.200.6mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3477109 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> rb_02_16_213027_208958_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_08_2906555_55_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_02_16_213027_208958_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213027_208958_ab_t000__robetta.zip -frag3 rb_02_16_213027_208958_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213027_208958_ab_t000__robetta.200.8mers.index.gz -fragB rb_02_16_213027_208958_ab_t000__robetta.200.6mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3485351 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> rb_02_16_213026_208957_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_06_09_2906558_22_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_02_16_213026_208957_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 3 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_02_16_213026_208957_ab_t000__robetta.zip -frag3 rb_02_16_213026_208957_ab_t000__robetta.200.3mers.index.gz -fragA rb_02_16_213026_208957_ab_t000__robetta.200.9mers.index.gz -fragB rb_02_16_213026_208957_ab_t000__robetta.200.6mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3477932 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> Windows 11
17) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103924) Posted 27 Dec 2021 by Tomcat雄猫 Post: the problem is that the one`s I abort are the `one minit wunders` that have only a few seconds of CPU time after several hours of elapsed time, and seem to be pointless to continue running them I've only seen that type of task once, I aborted it after over 20 hours. CPU time was ridiculously low, a few minutes at most, IIRC. Far more times, I see tasks that claim to be running, but with the timer stuck at 0:00 and no results in days. Those tasks get unstuck after relaunching BOINC. I haven't had any issues in a while, knock on wood.
18) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103923) Posted 27 Dec 2021 by Tomcat雄猫 Post: I've been out of the loop for a little while. Did they recently fix the RAM requirements for the vBox tasks? I'm running 7 Rosetta Python tasks + 1 WCG ARP on 16GBs of RAM. I'm not having issues, for once.
19) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103453) Posted 21 Nov 2021 by Tomcat雄猫 Post: I've always had this problem, but it's far worse with python tasks. aaam-NHM_pp-mTIQ_pp-SAR-AMACBEN2_pp_6_2539600_1_0 Instead of running this task, BOINC keeps downloading new Rosetta tasks and running those. Looking at all the tasks on that computer and you'll see this has nothing to do with queue size. It's almost as if BOINC periodically forgets a task exists. It's worse with Python tasks because BOINC will download the same number of tasks as the available threads but will be able to run at most 2 at a time. It's thus far more common to get clogs and "forgotten" tasks.
20) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103416) Posted 18 Nov 2021 by Tomcat雄猫 Post: One more data point: aagb-SAR-PHE-ACHC13T-mB3PHG_pp_2_2704977_1_1 According to task manager, VirtualBox Global Interface uses 0.5MB, VirtualBox Interface uses 2.3 MB, VirtualBox Headless Frontend uses 28.8, two other instances of VirtualBox Headless Frontend both use less than 1MB. Still can only get 1 Rosetta Python to run despite me actually have more than 7GB available (my settings mean that less than 6GB is available to BOINC). I guess these tasks really want 6GB of available RAM to run. The most I can do in theory is indeed 2. Why do these tasks have such absurd RAM requirements? Can anyone point me to a Python task that actually used more than 1GB of ram? I have 4 WCG tasks running, one ARP & three MCM, one Rosetta Python task, one YouTube video running, two chrome tabs open, and a generous smacking of background processes, I still have 7GB of free RAM.

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