Problems and Technical Issues with Rosetta@home

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Rames

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Message 93840 - Posted: 8 Apr 2020, 9:11:37 UTC - in response to Message 93839.  
Last modified: 8 Apr 2020, 9:17:37 UTC

Ive tried to found setting for that, where is it? how i can un-hide computers lol.

I found it!

https://stats.free-dc.org/stats.php?page=hostbycpid&cpid=93e13a8ffd12ebd3a4c1a0b75e8eba76
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Profile Grant (SSSF)

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Message 93841 - Posted: 8 Apr 2020, 9:30:59 UTC - in response to Message 93840.  

Ive tried to found setting for that, where is it? how i can un-hide computers lol.

I found it!
Still hidden when i looked again.
If you just go to your account, under "Computing and credit" click on Tasks, Click on Error and it will show all the errored Tasks, and the application.
If it was Rosetta Mini vX3.XX etc, etc then it's due to the dodgy Tasks.



In your account, Rosetta@home preferences, "Should Rosetta@home show your computers on its web site?" needs a tick against it, and "Update preferences" then clicked (some changes do require the BOINC Manager to contact the project before they take effect).
Grant
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Rames

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Message 93842 - Posted: 8 Apr 2020, 9:39:54 UTC - in response to Message 93841.  

Ive done that.

Rosetta v4.12
x86_64-pc-linux-gnu

I check that id matches with opteron and yeah it is correct. I just contacted server and it have now 8 tasks running with more than 5 minutes runtime. All failures have runtime from 5sec to 2minutes.
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Tomcat雄猫

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Message 93843 - Posted: 8 Apr 2020, 9:46:57 UTC - in response to Message 93842.  
Last modified: 8 Apr 2020, 9:48:26 UTC

I'm also having issues with the Rosetta mini 3.78. I'm on Windows 10 64bit version 1909, with 3 out of 3 tasks generating a computational error almost instantly. Doesn't seem to be localized to my machine, since my wing-men are also getting the same errors

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -1 (0xffffffff)</message>
<stderr_txt>
[2020- 4- 7 22:31:57:] :: BOINC:: Initializing ... ok.
[2020- 4- 7 22:31:57:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully. 
command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.78_windows_x86_64.exe -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers -in:file:native 00001.pdb -corrections::beta_nov16 -silent_gz 1 -frag9 00001.200.9mers -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 15 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip CF_monomer_103_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2049779
Registering options.. 
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok 
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize()  End reached
ERROR: Option matching -corrections:beta_nov16 not found in command line top-level context

</stderr_txt>
]]>
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Profile Grant (SSSF)

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Message 93845 - Posted: 8 Apr 2020, 9:56:25 UTC - in response to Message 93842.  
Last modified: 8 Apr 2020, 9:57:07 UTC

Ive done that.

[quote]Rosetta v4.12
x86_64-pc-linux-gnu
Tasks run by that application haven't been having issues, just the Rosetta Mini ones.

Managed to find a Linux host with lots of them
Rosetta Mini v3.78 x86_64-pc-linux-gnu

Stderr ouptut as posted by Tomcat above.
Grant
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Rames

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Message 93865 - Posted: 8 Apr 2020, 13:46:58 UTC - in response to Message 93845.  

Servers are running 8 and 9 rosetta packets now.

3oy2uu2b_Mini_Protein_binds_IL1R_COVID-19_design5_SAVE_ALL_OUT_905407_5
Same packets seems to run fine too. Its random, could it be hw related? Im waiting courier to deliever me cpu upgrade from 1.8ghz to 2.6ghz.

Its strange why they fail.
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Stephen "Heretic"

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Message 93867 - Posted: 8 Apr 2020, 14:00:29 UTC - in response to Message 93835.  

8G RAM? Well, that means it can only be run in x64 systems. Ok, bye bye Rosetta.
You need up to 1.3GB RAM per Task you run.
So even a system with less than 4GB can run 2 Tasks.


. . If you have absolutely nothing else happening you could get away with 4GB, if you have only 2GB, rotsa ruck!

Stephen

. .
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Profile VelocityRC

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Message 93869 - Posted: 8 Apr 2020, 14:52:50 UTC - in response to Message 93792.  

Hi all, new to Rosetta. I have been running Seti@Home since last fall with no issues. I added Rosetta@ home on two PC's. Upon re-boot Rosetta is removed from the list projects list. I have to add new task, select Rosetta and re-enter password info. Seti does not do this. What am I missing ?? I am using a different password from Seti if that makes a difference.
Not sure what the issue is. I just used the BOINC Manager, Tools, Add project, select Rosetta@home, New user, different password to my other project and everything went along OK from there.
I didn't reboot the system till a few days after joining up, and the project was still there when it did reboot.


Hi Grant, thanks for the reply. Nice to see you here, you sure were a lot of help on the Seti forum. Yeah I touched base with you regarding this before on Seti. I followed your advise and let things run on both PC's for several days and still have to login every re-boot, tried re-boot yesterday. Seti stays logged in, no Rosetta in the project list. I did the exact install process to the letter of Rosetta that you mentioned.

???? Frustrating

Thanks Bill S.
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amazoph

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Message 93874 - Posted: 8 Apr 2020, 15:49:27 UTC

Hi there,

I've a host which is pretty much getting near constant computation errors on any Rosetta tasks thrown at it, mostly near the end of the runtime which is rather frustrating.
https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=1664634

Plenty of free RAM so don't think that is the issue. BOINC client on this host is also set to use only 3 CPU cores.
Has anyone got any ideas what else I could look at to discover the reason for these errors? I did try looking in the BOINC data folder but there were no error log or output files by the time I checked.
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GT85

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Message 93876 - Posted: 8 Apr 2020, 16:20:11 UTC - in response to Message 93874.  

I’m getting the very same thing. Only on one machine though. Plenty of free ram too - at least 10gb free when this happens. All on Rosetta 4.12. Tried resetting project and various other things. No luck...
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Remarc

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Message 93877 - Posted: 8 Apr 2020, 16:21:14 UTC - in response to Message 93713.  

Hi, my old P4/WinXP machine started to receive some WUs about COVID19 (Rosetta 4.12) but all of them could not execute. The message said 'Computation Error'. Then another WU was downloaded and the same thing happened again. Is this because of Windows XP?

turn off HT (hyper-threading) and run again, this give you 1 task and will use less memory
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Jim1348

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Message 93878 - Posted: 8 Apr 2020, 16:25:37 UTC - in response to Message 93874.  

Has anyone got any ideas what else I could look at to discover the reason for these errors?

The error is "STATUS_ACCESS_VIOLATION". That could mean that you anti-virus is blocking it.
Try adding the "C:ProgramDataBOINC" folder as an exception to your AV. That might fix it.
If not, I would disable the AV temporarily, or use another one. I think that Microsoft Defender would probably work OK on Win10.
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Mod.Sense
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Message 93879 - Posted: 8 Apr 2020, 16:26:40 UTC - in response to Message 93874.  

Looks like you have many access violations. I am not seeing such errors with other people's problem reports. Have you run memtest?
Rosetta Moderator: Mod.Sense
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David

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Message 93888 - Posted: 8 Apr 2020, 17:55:21 UTC

Where do we post initialization and login questions, please?
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Profile Applejacks

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Message 93889 - Posted: 8 Apr 2020, 18:19:29 UTC

I've got one box out there that has gotten quite a few fails on it as well and hasn't had really much luck pulling in work.
https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=3995249

Thanks!
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Rames

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Message 93895 - Posted: 8 Apr 2020, 18:54:03 UTC

Valid (24) · Invalid (0) · Error (401) from Opteron server.

Thats sad. Compared to xeon server: Valid (186) · Invalid (0) · Error (6)
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Mod.Sense
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Message 93897 - Posted: 8 Apr 2020, 19:01:06 UTC - in response to Message 93888.  

Where do we post initialization and login questions, please?


Over in the questions and answers boards, there is one for getting started. A new thread on Number Crunching board would be fine too.
Rosetta Moderator: Mod.Sense
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MickyMeji

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Message 93910 - Posted: 8 Apr 2020, 21:05:56 UTC

Hi , I have installed BOINC on my PC and added the Rosseta@Home project but it seems to be no task at all. All I get is no work available to process.

am I missing something?
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Jim1348

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Message 93917 - Posted: 8 Apr 2020, 21:22:00 UTC - in response to Message 93910.  

All I get is no work available to process.

You sometime get that when you first attach. Wait a few hours.
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Kaddaman

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Message 93922 - Posted: 8 Apr 2020, 21:48:12 UTC

Is there any work for Android? Out of curiosity, I installed BOINC on my Galaxy S9 and connected to Rosetta, but I get the message "Rosetta for portable devices needs 1907,35 MB RAM but only 1805,47 MB is available for use". As far as I know, the Galaxy S9 has 4 GB of RAM and was/still is quite a flagship smartphone (currently rank 44 at Antutu), so what is the problem here? I just think that I have a small power brick laying around collecting dust, while it could be used for something good.
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Message boards : Number crunching : Problems and Technical Issues with Rosetta@home



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