Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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KaguraMea Send message Joined: 17 Nov 18 Posts: 10 Credit: 421,886 RAC: 3,882 ![]() |
Having multiple Computation Error a few seconds into running Rosetta Beta application (6 in 33 tasks just downloaded). BOINC log indicates "Output file xxx for task yyy absent". System kernel log showed no filesystem error and likes. Probably these tasks are just buggy? |
Dr Who Fan![]() Send message Joined: 28 May 06 Posts: 87 Credit: 278,104 RAC: 101 |
Since you're computer are hidden, I'm going to say it's more than likely the buggy Rosetta tasks that have been discussed in the forum below. Nothing you can do Problems and Technical Issues with Rosetta@home. Go to the last few most recent posting (about 1 week back until the current day) )in the topic. ![]() ![]() |
Jean-David Beyer Send message Joined: 2 Nov 05 Posts: 202 Credit: 6,915,573 RAC: 9,914 ![]() |
Most of mine seem to work on my Linux machine. Those that error out look like this: Stderr output <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu @10aa_1_a_hal_10aa_ce9818_d66_0001.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 Using database: database_f5ae1de8e1/database ERROR: Error in simple_cycpep_predict app! The imported native pose has a different number of residues than the sequence provided. ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2798 BOINC:: Error reading and gzipping output datafile: default.out 10:16:38 (199863): called boinc_finish(1) </stderr_txt> ]]> ![]() |
Bill Swisher Send message Joined: 10 Jun 13 Posts: 50 Credit: 37,978,468 RAC: 139,821 ![]() |
They seem to be getting quicker on fixing things! Only went away for about a day and a half this week. <sarcasm> Let's give them a "Well done"? </sarcasm> But they really need to look into the cron job(s) running on late Tuesday or early Wednesday. ![]() |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2202 Credit: 42,005,723 RAC: 17,995 ![]() |
What day is it today? Third consecutive Wednesday. It's like clockwork. boinc-process server falls over on a Wednesday Revives on a Friday It's almost biblical. When is Easter this year? The Gods of Rosetta have their Easter every week [/blasphemy] ![]() ![]() |
Mario W. Send message Joined: 15 Aug 07 Posts: 16 Credit: 290,903 RAC: 0 |
While starting Rosetta after a While and i want to show the Graphics this Window Pops up? https://imgur.com/a/zK3pjiL Im confused, since when i need to buy a License for Rosetta to let it run? How ever, it seems that i have some new Tasks to run... (Overall 27 new Tasks, but im still confused about this Message) |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 277 Credit: 523,512 RAC: 500 |
Graphics should appear in separate window. |
Stevie G Send message Joined: 15 Dec 18 Posts: 113 Credit: 924,992 RAC: 1,827 ![]() |
Having multiple Computation Error a few seconds into running Rosetta Beta application (6 in 33 tasks just downloaded). BOINC log indicates "Output file xxx for task yyy absent". System kernel log showed no filesystem error and likes. Of the 20 most recent Rosetta Beta tasks on my Windows 11 machine, seven were Errors While Computing. SGaber Oldsmar, FL |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2202 Credit: 42,005,723 RAC: 17,995 ![]() |
I've been sneaking a few tasks throughout the day and interleaving them with WCG and SiDock tasks, but in the last hour Rosetta has been coming through quie a lot. Front page now shows 2.2m new tasks. Go get'em ![]() ![]() |
Bill Swisher Send message Joined: 10 Jun 13 Posts: 50 Credit: 37,978,468 RAC: 139,821 ![]() |
YAY! I had one computer run out of Rosetta work, loaded a days worth of WCG to keep it busy. I hate to see wasted BogoMips. Idle hands are the devil's workshop... ![]() |
Tom M Send message Joined: 20 Jun 17 Posts: 100 Credit: 19,167,661 RAC: 92,558 ![]() |
YAY! I had one computer run out of Rosetta work, loaded a days worth of WCG to keep it busy. I hate to see wasted BogoMips. +1 Help, my tagline is missing..... Help, my tagline is......... Help, m........ Hel..... |
Tom M Send message Joined: 20 Jun 17 Posts: 100 Credit: 19,167,661 RAC: 92,558 ![]() |
I've been sneaking a few tasks throughout the day and interleaving them with WCG and SiDock tasks, but in the last hour Rosetta has been coming through quie a lot. +1 Help, my tagline is missing..... Help, my tagline is......... Help, m........ Hel..... |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2202 Credit: 42,005,723 RAC: 17,995 ![]() |
YAY! I had one computer run out of Rosetta work, loaded a days worth of WCG to keep it busy. I hate to see wasted BogoMips. I've been keeping my WCG/SiDock tasks under control - letting a few come down, then setting No New tasks again while the occasional Rosetta has been sneaking through. So I've only got 3-4hrs of backup tasks to clear out before filling up with Rosetta to take their place. It came good this time. Let's see how many I can complete before boinc-server falls over again on Wednesday... ![]() ![]() |
Bill Swisher Send message Joined: 10 Jun 13 Posts: 50 Credit: 37,978,468 RAC: 139,821 ![]() |
before boinc-server falls over again on Wednesday... Once upon a time I took care of a bunch of VAX/VMS machines. The backup routine would NOT run! I'd come in in the morning and the machine had rebooted, nothing in the logs. One night, dunno why, I had to be there and was it was booooring. So I was watching the backup run. Lo and behold an error message popped up on the screen. I caught enough of a glimpse to read it before the machine rebooted. Did some research about that message and tweaked the OS a bit and never had a problem after that. So...back to my statement a week or so back...somebody really needs to sit there and figure out why the machine(s) is/are falling over and can't get up. Things happen that don't get into the system logs. Meanwhile I try and keep a 3 day buffer for work...Wednesday...Thursday...Friday they hopefully come back alive...otherwise it's dead all weekend. ![]() |
![]() Send message Joined: 28 Mar 20 Posts: 1760 Credit: 18,534,891 RAC: 318 |
Meanwhile I try and keep a 3 day buffer for work...Wednesday...Thursday...Friday they hopefully come back alive...otherwise it's dead all weekend.Un-necesssssary, as not only are you running multiple projects, so at least one of them will have work available at any given time, but the server issue here isn't one affecting work availability. All it means is that no Tasks are Validated or Assimilated in to the science database. You can still get new work, you can still return work. You just don't get any Credit for it till the dead server is brought back up again. Grant Darwin NT |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2202 Credit: 42,005,723 RAC: 17,995 ![]() |
YAY! I had one computer run out of Rosetta work, loaded a days worth of WCG to keep it busy. I hate to see wasted BogoMips. I haven't completed any tasks from the new batch yet, but I just checked anyway. I haven't had any tasks crash early in their run from anything I've downloaded in the last 40hrs. That'll be tasks from previous batches of work in the main, but let's cross fingers that it also applies to the 2.2m batch as I estimate we lost around 25% of tasks from the previous one. That's a lot of work and a lot of extra time we could've been running - maybe 2-3 days worth. ![]() ![]() |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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