Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
Startallback, 3rd party software, makes it look like 7 or any version you want. 47% of Windows worldwide isn't paid for. |
srettie Volunteer moderator Project developer Project scientist Send message Joined: 10 Jul 17 Posts: 9 Credit: 50,961 RAC: 0 |
I can hopefully clear that up a little. When predicting protein structures we generate possible structures for a given sequence of amino acids and score them using the Rosetta energy function. These structures can be any chemically reasonable structure and can vary wildly from the correct one. If we have enough sampling and diversity in these decoys of the real structure we can obtain a complete (or at least close to complete) energy landscape for a given sequence, with an energy minimum at the correct structure. |
Jesse Viviano Send message Joined: 14 Jan 10 Posts: 42 Credit: 2,700,472 RAC: 0 |
I have a task that has been stuck waiting for validation at https://boinc.bakerlab.org/rosetta/result.php?resultid=1498325740. Please diagnose why my task never validated. |
Mario W. Send message Joined: 15 Aug 07 Posts: 13 Credit: 290,903 RAC: 1 |
Okay, just to reply on that. I complete uninstalled BOINC, deleted the "Program Data" Folder with the Projects complete and afterwards reinstalled the Client and suprisingly it gets (at the Moment 26 Tasks running) heck knows what causes it or maybe was the Issue. I leave it running for a bit and see what happens. Thanks for Reply and Help, much apprechiated. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
Thankyou srettie that answers it , though I think my ear wax is melting :-) |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
I can hopefully clear that up a little. When predicting protein structures we generate possible structures for a given sequence of amino acids and score them using the Rosetta energy function. These structures can be any chemically reasonable structure and can vary wildly from the correct one. If we have enough sampling and diversity in these decoys of the real structure we can obtain a complete (or at least close to complete) energy landscape for a given sequence, with an energy minimum at the correct structure.How come your tasks are 3 hours and the usual is 8 hours? |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 255 Credit: 458,679 RAC: 308 ![]() |
Probably because they have set Target CPU run time in https://boinc.bakerlab.org/rosetta/prefs.php?subset=project to 3 |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
Probably because they have set Target CPU run time in https://boinc.bakerlab.org/rosetta/prefs.php?subset=project to 3I meant the new batch are set at the server to be 3 hours. I was wondering why. When I said "your", I was replying to the scientist who created them. |
![]() Send message Joined: 1 Dec 05 Posts: 1963 Credit: 9,099,488 RAC: 551 ![]() |
There are plans for more python tasks, but we are still working on creating the new disk image for the VM. Still waiting... |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
There are 3 million normal tasks again (a batch last week too). Try kicking your computer.There are plans for more python tasks, but we are still working on creating the new disk image for the VM. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
Try kicking your computer. I have done that kind of `reboot` wearing steel toecap boots [just for the hell of it] though I knew I was sending the case off for scrap metal the next week :-) |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
I have done that kind of `reboot` wearing steel toecap boots [just for the hell of it]As a boy we used to go to the skip and make old CRTs implode. My friend caused my dad's primus stove to explode. Apparently it was designed for paraffin not petrol. |
![]() Send message Joined: 1 Dec 05 Posts: 1963 Credit: 9,099,488 RAC: 551 ![]() |
There are 3 million normal tasks again (a batch last week too). Try kicking your computer. I'm already crunching. By the way, Ralph@Home published a new Win64 app after almost 3 years from the last update... |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
But you said "still waiting" when I was crunching. What was wrong?There are 3 million normal tasks again (a batch last week too). Try kicking your computer. By the way, Ralph@Home published a new Win64 app after almost 3 years from the last update...I left that project as nothing ever happened. Any tasks? |
![]() Send message Joined: 1 Dec 05 Posts: 1963 Credit: 9,099,488 RAC: 551 ![]() |
But you said "still waiting" when I was crunching. What was wrong? I'm waiting the new app that David annunced months ago. Meantime i'm crunching the "3-years-old" app. :-P Ileft that project as nothing ever happened. Any tasks? Up to now, no tasks with new app. And we don't know if is only bugfix or has new protocols/optimizations/etc |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
I'm waiting the new app that David annunced months ago.Steven changed something, I saw test tasks, now I see named tasks. I thought he'd changed the programming, or was it just the data sets? Up to now, no tasks with new app.I'll shove it back on and see if anything happens. Strangely I had to recreate my account. |
![]() Send message Joined: 1 Dec 05 Posts: 1963 Credit: 9,099,488 RAC: 551 ![]() |
Steven changed something, I saw test tasks, now I see named tasks. I thought he'd changed the programming, or was it just the data sets? From the apps page the executable is still the same. Maybe they change the input files Strangely I had to recreate my account. Uh, that's stange. |
Mr P Hucker![]() Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,231,553 RAC: 1,264 ![]() |
Maybe I closed it, I wouldn't have thought so, but my memory isn't good enough to know what I did. I want to be one of those people who can actually remember with accuracy things they did months ago (do they exist?)Strangely I had to recreate my account.Uh, that's stange. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
Maybe I closed it, I wouldn't have thought so, but my memory isn't good enough to know what I did. I want to be one of those people who can actually remember with accuracy things they did months ago (do they exist?)Strangely I had to recreate my account.Uh, that's stange. Yes , and they end up with top jobs and earn loadzamoney , well maybe . |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 255 Credit: 458,679 RAC: 308 ![]() |
They work with british police. https://en.wikipedia.org/wiki/Super_recogniser |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
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