Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Does it run all 8 cores on one frequency or is it like those new intel cpus with half cores with half power? |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2141 Credit: 41,526,036 RAC: 10,392 |
My newer phone stopped doing those, it kept crashing the OS. That was before and after I upgraded it from Android 9 to 11. No idea why this happened. Only thing is it has a very small amount of RAM. In fact I can only do 4 Einsteins at once, on its 8 cores. The others do Universe. Can't find anything else with a good supply of work.I have a Samsung A10 with Android 11 and a VKWorld Mix Plus with Android 7. I guess you got lucky. I normally get quite a few tasks on both of them.I have 2 Androids who were told no tasks available 2, 7, and 9 hours ago. So for some reason there aren't many of them.I can't answer that. I have a Samsung 10 with Android 12 if that makes a difference and I'm definitely running 2 tasks right now, with 2 recently completed I don't understand phones at all, so I can't help as to why. Generally speaking, WCG tasks seem to be less resource intensive so it does seem odd if you can run other projects ok. |
hadron Send message Joined: 4 Sep 22 Posts: 68 Credit: 1,586,757 RAC: 973 |
You are beginning to remind me of the people I've fought with over the past few years, who actually believe that H.264 and x.264 are different video codecs. But on to the present, and your apparent attention deficit disorder. I'm not interested in your OCD. I know perfectly well how all disks work and have been in the business since 1997. Please learn basic English. Here is a helper for you:I know exactly what they are and have several, they're much faster. An SSD over SATA is far too slow, because of the SATA.[quote]... SSDs suck, I use NVME. Thanks for the history lesson, but I actually don't need it. I've been in this game since the IBM/XT was born. I've done my stint in IT, back when ethernet was barely a rumour and ARCnet was all the rage. A colleague at the time was all hot about ethernet, as the rumours suggested that ethernet would be capable of a whole 2 Mbps whereas ARCnet could only do 1!! Talk about progress!! BTW, you forgot to mention SCSI, and SATA was not "previously IDE" -- SATA means "serial ATA", while another name for IDE is "parallel ATA". So, once again -- SSD simply means the device uses solid state electronics as its storage medium. it absolutely does NOT refer to the device/host interface, which must be specified separately. |
UBT - wbiz Send message Joined: 5 Feb 21 Posts: 6 Credit: 968,608 RAC: 20 |
I know perfectly well how all disks work and have been in the business since 1997. Please learn basic English. Here is a helper for you: As I understand it .... The underlying speed difference of the SSD chips is probably not that much different, NVME speed relies heavily on dram cache inside the SSD package, if a similar cache system was built into the CPU motherboard and a SATA drive used, would the performance of the system be similar to NVME? Basically NVME vs SATA is measuring speed at a different point in the chain. Going one step further, do any motherboards have a dedicated disk-cache system built in? If not, why not? It would appear to be a terrible waste having every SSD containing components that could be located on the motherboard where more flexible choices could be included. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,391,361 RAC: 19,589 |
As I understand it .... The short answer is no- NVMe devices use the PCIe bus which offers up to 64GB/s, whereas SATA devices use the SATA interface and SATA III is limited to 600MB/s. Grant Darwin NT |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Dropped WCG. Seems the GPU server can't do it's job handing out tasks properly. Everything stalls with transient errors. Oh well...something else then. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2141 Credit: 41,526,036 RAC: 10,392 |
Dropped WCG. Seems the GPU server can't do it's job handing out tasks properly. Not sure why you need to drop it. You're not getting runnable tasks anyway... But I sympathise. I'm getting the same thing and it's driving me nuts. On the plus side, while Rosetta has some tasks, hits on WCG have reduced and it's not <quite> as bad as it has been. Still terrible though, I accept |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,781,025 RAC: 4,962 |
Meantime, the validator and the assimilator seem to be freezed |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Does it run all 8 cores on one frequency or is it like those new intel cpus with half cores with half power?It is "big/little" with different frequencies, but they're only marginally different. Something like 1.4 and 1.8. 2 small 6 large. But strangely they tend to all run at the same speed, perhaps it can't use all 8 at full power at once or it would overheat. Probably I could run 6 of 1.8 or 8 of 1.4. But since WCG is single core, I don't see why this would matter. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
You are beginning to remind me of the people I've fought with over the past few years, who actually believe that H.264 and x.264 are different video codecs.ROTFPMSL. Let me explain again, I'm talking about what people call them, not precise OCD terminology. Again, would you tell me you've just bought a car or you've just bought a Ferrari? Anyone saying they have an SSD clearly has a SATA attached one, or they would say NVME, just take a look at the ads for new computers containing them. You don't undersell what you're advertising. SATA was IDE. It was the successor to it. They made it faster and serial. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Huh? I was getting almost 3 million credit per day running 12 GPUs on it 24/7. You need to configure Boinc better....Dropped WCG. Seems the GPU server can't do it's job handing out tasks properly. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Meantime, the validator and the assimilator seem to be freezedDoes it matter? The tasks are coming through and we can return them. The little job of validating will take place very quickly once someone comes into the office on Monday and kicks the server. Are you that desperate for your credits? |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,781,025 RAC: 4,962 |
Are you that desperate for your credits? If you know me, the credits are the last of my thoughts. But if the validator has problems, the work could be lost: so no science and wasted work. |
Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0 |
Bad batch of RB tasks, perhaps? rb_10_07_420543_416291_ab_t000__robetta_cstwt_5.0_FT_IGNORE_THE_REST_03_06_2919833_26_0 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @rb_10_07_420543_416291_ab_t000__robetta_FLAGS -in::file::fasta t000_.fasta -jumps:pairing_file t000_.fasta.bbcontacts.jumps -jumps:random_sheets 1 -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 5.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 5.0 -in:file:boinc_wu_zip rb_10_07_420543_416291_ab_t000__robetta.zip -frag3 rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -fragA rb_10_07_420543_416291_ab_t000__robetta.200.6mers.index.gz -fragB rb_10_07_420543_416291_ab_t000__robetta.200.3mers.index.gz -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2145106 Using database: database_357d5d93529_n_methylminirosetta_database [ ERROR ]: Caught exception: File: C:cygwin64homeboinc4.17Rosettamainsourcesrccore/pack/dunbrack/SingleResidueDunbrackLibrary.hh:306 chi angle must be between -180 and 180: -nan(ind) ------------------------ Begin developer's backtrace ------------------------- BACKTRACE: ------------------------- End developer's backtrace -------------------------- AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS. </stderr_txt> ]]> rb_09_03_406077_401241__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_2917054_4409_1 <core_client_version>7.20.2</core_client_version> <![CDATA[ <message> (unknown error) - exit code 3221225477 (0xc0000005)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe -run:protocol jd2_scripting @flags_rb_09_03_406077_401241__t000__0_C1_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip input_rb_09_03_406077_401241__t000__0_C1_robetta.zip -max_registry_shift 3 -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1826313 Using database: database_357d5d93529_n_methylminirosetta_database Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0000000000000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 7.9.0 Dump Timestamp : 10/08/22 10:00:20 Install Directory : C:Program FilesBOINC Data Directory : B:BOINC Project Symstore : https://boinc.bakerlab.org/rosetta/symstore LoadLibraryA( B:BOINCdbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( B:BOINCsymsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCsrcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( B:BOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: B:BOINCslots5;B:BOINCprojectsboinc.bakerlab.org_rosetta;srv*B:BOINCprojectsboinc.bakerlab.org_rosettasymbols*http://msdl.microsoft.com/download/symbols;srv*B:BOINCprojectsboinc.bakerlab.org_rosettasymbols*https://boinc.bakerlab.org/rosetta/symstore |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Look, it's just crashed, someone restarts the validator program on Monday and it goes through them in 20 minutes.Are you that desperate for your credits? |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,781,025 RAC: 4,962 |
Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Don't speak about R@H server. They are VERY old, not updated, etc |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
WTF? From their server status page, 72TB of SSD, show me another project with that, and I've never seen Rosetta slow or overloaded, unlike almost every other project out there that can't keep up:Work doesn't tend to get lost unless there's some catastrophic disk error. If you look at the specs of Rosetta's Servers, I very much doubt that would happen. Web servers: Rack mounted 1U SuperMicro server Specs: Intel Xeon CPU E3-1270 v5 @ 3.60GHz, 32 GB RAM, X11SSH-TF, 10 GbE Storage: 256GB SSD for OS File system: ZFS on Linux v0.7 OS: Ubuntu Server 16.04 Primary file server: Rack mounted 4U SuperMicro server Specs: Dual Intel Xeon E5-2640 v4 @ 2.40GHz, 256 GB RAM, X10DRD-IT, 2 x 10 GbE Storage: 72 x 1TB SSD via LSI SAS 9207-8i File system: ZFS on Linux v0.7 (raidz2, 9 vdevs with 8 disks) served via NFSv4 OS: Ubuntu Server 16.04 Backup file server: Rack mounted 4U SuperMicro server Specs: Intel Xeon E5-1650 v4 @ 3.60GHz, 128 GB RAM, X10SRM-TF, 2 x 10 GbE Storage: 24 x 10TB HGST drives via LSI SAS 9300-8i File system: ZFS on Linux v0.7 (raidz2, 2 vdevs with 12 disks) OS: Ubuntu Server 16.04 Database servers: Rack mounted 1U SuperMicro server Specs: Intel Xeon CPU E3-1270 v6 @ 3.80GHz, 64 GB RAM, X11SSH-TF, 10 GbE Storage: 2 x 1TB SSD File system: ZFS on Linux v0.7 (mirror) OS: Ubuntu Server 16.04 |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Ubuntu 16.04 will recieve Extended Security Maintenance up to 2026 https://ubuntu.com/about/release-cycle |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,781,025 RAC: 4,962 |
Ubuntu 16.04 will recieve Extended Security Maintenance up to 2026 For a fee. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2002 Credit: 9,781,025 RAC: 4,962 |
WTF? From their server status page, 72TB of SSD, show me another project with that, and I've never seen Rosetta slow or overloaded, unlike almost every other project out there that can't keep up: All this HW and SW are, almost, 10 year old. Ehy, It's not a problem, i have customers with over 12 years old server. But you can't say it's all up to date. |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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