Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
That's odd. I have 8 physical 16 virtual BOINC is told to use 95% i.e. 15 cores in order to leave one free for GPU and general purpose things. We have had this discussion in the past already. I have FAH running, but GPU only. NOW Boinc has allocated 4 new slots for working on these new tasks. First time is when I started to compose, 5 minutes later the second values are showing. Original #1 task 39.8% 4 hrs clock time and 1:38 CPU #2 47.9 +/- 1:13/35 Went up to 48 now #3 47.5 +/- 57/27 Dropped to 48 #4 51.5 +/- 54/27 Went up to 52.2 #5 50.9 +/- 28/14 Dropped to 48 Only using 32% of all physical memory Task manager shows 4.2 tasks only using only 2-5% CPU% out of BOINC managers 66-70% of the total cpu percentage. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
To drop to 50% is very odd indeed. So you have 15 of Rosetta 4.2 tasks running at once, yes? And the 16th thread helps the GPU with Folding? Folding hasn't stolen the CPU had it? Folding often does whatever it likes and ignores what you say. I do similar things and get almost 100% usage in Rosetta. Use the task manager to find out how much % of your CPU each program is getting. With 16 threads, you should be getting about 6% usage for each Rosetta task. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
6.25 |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
6.25I said about 6 because the OS etc etc steals a bit. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
To drop to 50% is very odd indeed. So you have 15 of Rosetta 4.2 tasks running at once, yes? And the 16th thread helps the GPU with Folding? Folding hasn't stolen the CPU had it? Folding often does whatever it likes and ignores what you say. I do similar things and get almost 100% usage in Rosetta. Use the task manager to find out how much % of your CPU each program is getting. With 16 threads, you should be getting about 6% usage for each Rosetta task. Well I had a deep clean round with Wisecare and cleaned up the system and reboot. The CPU format is 15 cores for BOINC and 1 Core everything esle (GPU support, web browsing, youtube if I am on it), etc. BOINC is now running 1 GPU Grid, 1 Milkyway (1 CPU core for both) and 14 cores of 4.2 for a total of 15 cores BOINC Percentages have evened out now on the new work but with the exception of the one I'm 5hrs clock time running and only 2hrs+ of CPU and only 46% CPU. Progress is only 38% STDERR on these tasks does not offer any information. 2nd task runs at 51% CPU running 2:13/1:08 and 17.7 done 3rd task is 52% 1:58/1:02 and 15.4 4 and 5 show similar behavior All the rest show normal behavior 30 clock and 20 cpu with 62-65% I have one running at 94%! I'm about ready to kill that 5hr one because all the other tasks will finish before that even gets close to finishing. Rosetta@home 4.20 Rosetta 10mer_af_hallucinated_163_6_best_SAVE_ALL_OUT_2918052_367_0 05:15:14 (02:32:10) 48.2 41.242 04:42:02 10/5/2022 1:45:59 PM Running 273.99 MB 249.61 MB DESKTOP-LFM92VN [14] 00:00:12 This comes from Boinc Tasks |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Do you run python workunits for gpugrid? Python workunits use several cpu cores to run python machine learning environment, so conflict with cpu workunits. For gpugrid you can tail wrapper_run.out file. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
There's something terribly wrong with your system if you're getting 16 things getting half a core each when you have 16 cores. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Do you run python workunits for gpugrid? Python workunits use several cpu cores to run python machine learning environment, so conflict with cpu workunits. Well that's interesting...in task manager there is 1 python that uses about 29.x% max and goes down to 16% And slew...I can't count..maybe 30 processes but only 0.1% each. So that grabs what...31% or something? I had a look while suspending GPU. While it takes them out of the system resources, BOINC does not change anything with RAH%. I have WCG running on GPU, but nothing else besides FAH is running GPU. So it really doesn't look like python is affecting anything. I'll run the task out and put that project as no new tasks and see what happens. Due to energy costs, I can not run this system like I used to. So there will be a delay in getting started again. (10 hrs or more but less than a day) |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Is there any CPU time free in task manager? If yes, something very weird is wrong. If no, get rid of whatever is using it up. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Is there any CPU time free in task manager? If yes, something very weird is wrong. If no, get rid of whatever is using it up. I killed some non windows stuff that I don't use that is in the background. It did not make any difference. I'll try a "repair" of BOINC and see if that does anything, otherwise tomorrow night (Eu time) I'll start up again and see what happens. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Show us what you see in your task manager. What is the free % CPU usage? What CPU usage does each Rosetta task get? We can't help you if you give no information. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Show us what you see in your task manager. What is the free % CPU usage? What CPU usage does each Rosetta task get? We can't help you if you give no information. Well one thing I need to do is disable that MS Edge at startup. I just read about that. Other things were from MSI (the MB) and I don't recall what else. The others were all windows processes. How do I post a picture here? That's one thing I have never figured out. I'll see you guys tomorrow night...one task has reported. 8 hours clock for 6 hours run. https://boinc.bakerlab.org/rosetta/result.php?resultid=1495336328 |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Upload it on imgur and then hotlink with img tag [img] [/img] |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Upload it on imgur and then hotlink with img tag Just tried that both with login and nonlogin to imgur. It just shows a broken picture logo here. Tried manual typing and the hot buttons. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
You should rmb click on uploaded image and then press copy image url. What does "C:\programdata\BOINC\slots\gpugrid slot\wrapper_run.out" contain? |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
You should rmb click on uploaded image and then press copy image url. Nothing, because that specific folder does not exist in programdata and a search for wrapper_run.out produces nothing. The search term "wrapper" does not produce anything. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
What do wrapper_run.out and stderr.txt files in gpugrid workunit slot directory contain? |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
So this is Boinctasks readout |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
You need to click the three dots at the top right of your photo in imgur, then "get share links". Use the one that says "BBCode (Forums)" which is a URL encased in square brackets and img markers. Just paste that in here. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
What do wrapper_run.out and stderr.txt files in gpugrid workunit slot directory contain? 22:32:24 (13244): wrapper (7.9.26016): starting 22:32:24 (13244): wrapper: running .7za.exe (x pythongpu_windows_x86_64__cuda1131.tar.gz) 7-Zip (A) 9.20 Copyright (c) 1999-2010 Igor Pavlov 2010-11-18 Processing archive: pythongpu_windows_x86_64__cuda1131.tar.gz Extracting pythongpu_windows_x86_64__cuda1131.tar Everything is Ok Size: 5888430080 Compressed: 2863388979 22:33:35 (13244): .7za.exe exited; CPU time 53.765625 22:33:35 (13244): wrapper: running .7za.exe (x pythongpu_windows_x86_64__cuda1131.tar -y) 7-Zip (A) 9.20 Copyright (c) 1999-2010 Igor Pavlov 2010-11-18 Processing archive: pythongpu_windows_x86_64__cuda1131.tar Extracting Librarysslcacert.pem Extracting Librarysslcert.pem Extracting Librarybin1033ifcore_msg.dll Extracting Librarybin1033irc_msg.dll Extracting Librarybin1033libmUI.dll Extracting Librarybincilkrts20.dll Extracting Librarybinifdlg100.dll Extracting Librarybinlibchkp.dll 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Librarybinliblz4.dll Extracting Librarybinlz4.exe Extracting Libraryincludelz4.h Extracting Libraryincludelz4frame.h Extracting Libraryincludelz4hc.h Extracting Librarylibliblz4.lib Extracting Librarybinc_rehash.pl Extracting Librarybinlibcrypto-1_1-x64.dll Extracting Librarybinlibcrypto-1_1-x64.pdb Extracting Librarybinlibssl-1_1-x64.dll Extracting Librarybinlibssl-1_1-x64.pdb Extracting Librarybinopenssl.exe Extracting Librarybinopenssl.pdb Extracting Libraryincludeopenssl__DECC_INCLUDE_EPILOGUE.H Extracting Libraryincludeopenssl__DECC_INCLUDE_PROLOGUE.H Extracting Libraryincludeopensslaes.h Extracting Libraryincludeopensslapplink.c Extracting Libraryincludeopensslasn1.h Extracting Libraryincludeopensslasn1_mac.h Extracting Libraryincludeopensslasn1err.h Extracting Libraryincludeopensslasn1t.h Extracting Libraryincludeopensslasync.h Extracting Libraryincludeopensslasyncerr.h Extracting Libraryincludeopensslbio.h Extracting Libraryincludeopensslbioerr.h Extracting Libraryincludeopensslblowfish.h Extracting Libraryincludeopensslbn.h Extracting Libraryincludeopensslbnerr.h Extracting Libraryincludeopensslbuffer.h Extracting Libraryincludeopensslbuffererr.h Extracting Libraryincludeopensslcamellia.h Extracting Libraryincludeopensslcast.h Extracting Libraryincludeopensslcmac.h Extracting Libraryincludeopensslcms.h Extracting Libraryincludeopensslcmserr.h Extracting Libraryincludeopensslcomp.h Extracting Libraryincludeopensslcomperr.h Extracting Libraryincludeopensslconf.h Extracting Libraryincludeopensslconf_api.h Extracting Libraryincludeopensslconferr.h Extracting Libraryincludeopensslcrypto.h Extracting Libraryincludeopensslcryptoerr.h Extracting Libraryincludeopensslct.h Extracting Libraryincludeopensslcterr.h Extracting Libraryincludeopenssldes.h Extracting Libraryincludeopenssldh.h Extracting Libraryincludeopenssldherr.h Extracting Libraryincludeopenssldsa.h Extracting Libraryincludeopenssldsaerr.h Extracting Libraryincludeopenssldtls1.h Extracting Libraryincludeopenssle_os2.h Extracting Libraryincludeopensslebcdic.h Extracting Libraryincludeopensslec.h Extracting Libraryincludeopensslecdh.h Extracting Libraryincludeopensslecdsa.h Extracting Libraryincludeopensslecerr.h Extracting Libraryincludeopensslengine.h Extracting Libraryincludeopensslengineerr.h Extracting Libraryincludeopensslerr.h Extracting Libraryincludeopensslevp.h Extracting Libraryincludeopensslevperr.h Extracting Libraryincludeopensslhmac.h Extracting Libraryincludeopensslidea.h Extracting Libraryincludeopensslkdf.h Extracting Libraryincludeopensslkdferr.h Extracting Libraryincludeopenssllhash.h Extracting Libraryincludeopensslmd2.h Extracting Libraryincludeopensslmd4.h Extracting Libraryincludeopensslmd5.h Extracting Libraryincludeopensslmdc2.h Extracting Libraryincludeopensslmodes.h Extracting Libraryincludeopensslobj_mac.h Extracting Libraryincludeopensslobjects.h Extracting Libraryincludeopensslobjectserr.h Extracting Libraryincludeopensslocsp.h Extracting Libraryincludeopensslocsperr.h Extracting Libraryincludeopensslopensslconf.h Extracting Libraryincludeopensslopensslv.h Extracting Libraryincludeopensslossl_typ.h Extracting Libraryincludeopensslpem.h Extracting Libraryincludeopensslpem2.h Extracting Libraryincludeopensslpemerr.h Extracting Libraryincludeopensslpkcs12.h Extracting Libraryincludeopensslpkcs12err.h Extracting Libraryincludeopensslpkcs7.h Extracting Libraryincludeopensslpkcs7err.h Extracting Libraryincludeopensslrand.h Extracting Libraryincludeopensslrand_drbg.h Extracting Libraryincludeopensslranderr.h Extracting Libraryincludeopensslrc2.h Extracting Libraryincludeopensslrc4.h Extracting Libraryincludeopensslrc5.h Extracting Libraryincludeopensslripemd.h Extracting Libraryincludeopensslrsa.h Extracting Libraryincludeopensslrsaerr.h Extracting Libraryincludeopensslsafestack.h Extracting Libraryincludeopensslseed.h Extracting Libraryincludeopensslsha.h Extracting Libraryincludeopensslsrp.h Extracting Libraryincludeopensslsrtp.h Extracting Libraryincludeopensslssl.h Extracting Libraryincludeopensslssl2.h Extracting Libraryincludeopensslssl3.h Extracting Libraryincludeopensslsslerr.h Extracting Libraryincludeopensslstack.h Extracting Libraryincludeopensslstore.h Extracting Libraryincludeopensslstoreerr.h Extracting Libraryincludeopensslsymhacks.h Extracting Libraryincludeopenssltls1.h Extracting Libraryincludeopensslts.h Extracting Libraryincludeopenssltserr.h Extracting Libraryincludeopenssltxt_db.h Extracting Libraryincludeopensslui.h Extracting Libraryincludeopenssluierr.h Extracting Libraryincludeopensslwhrlpool.h Extracting Libraryincludeopensslx509.h Extracting Libraryincludeopensslx509_vfy.h Extracting Libraryincludeopensslx509err.h Extracting Libraryincludeopensslx509v3.h Extracting Libraryincludeopensslx509v3err.h Extracting Librarylibengines-1_1capi.dll Extracting Librarylibengines-1_1capi.pdb Extracting Librarylibengines-1_1padlock.dll Extracting Librarylibengines-1_1padlock.pdb Extracting Libraryliblibcrypto.lib Extracting Libraryliblibssl.lib Extracting Librarysslct_log_list.cnf Extracting Librarysslct_log_list.cnf.dist Extracting LibrarysslmiscCA.pl Extracting Librarysslmisctsget.pl Extracting Librarysslopenssl.cnf Extracting Librarysslopenssl.cnf.dist Extracting .crates2.json Extracting binpy-spy.exe Extracting Librarybinliblzma.dll Extracting Librarybinlzmainfo.exe Extracting Librarybinunxz.exe Extracting Librarybinxz.exe Extracting Librarybinxz_static.exe Extracting Libraryincludelzma.h Extracting Libraryincludelzmabase.h Extracting Libraryincludelzmabcj.h Extracting Libraryincludelzmablock.h Extracting Libraryincludelzmacheck.h Extracting Libraryincludelzmacontainer.h Extracting Libraryincludelzmadelta.h Extracting Libraryincludelzmafilter.h Extracting Libraryincludelzmahardware.h Extracting Libraryincludelzmaindex.h Extracting Libraryincludelzmaindex_hash.h Extracting Libraryincludelzmalzma12.h Extracting 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Extracting Librarybinh5format_convert.exe Extracting Librarybinh5import.exe Extracting Librarybinh5jam.exe Extracting Librarybinh5ls-shared.exe Extracting Librarybinh5ls.exe Extracting Librarybinh5mkgrp.exe Extracting Librarybinh5repack-shared.exe Extracting Librarybinh5repack.exe Extracting Librarybinh5repart.exe Extracting Librarybinh5stat-shared.exe Extracting Librarybinh5stat.exe Extracting Librarybinh5unjam.exe Extracting Librarybinh5watch.exe Extracting Librarybinhdf5.dll Extracting Librarybinhdf5_cpp.dll Extracting Librarybinhdf5_hl.dll Extracting Librarybinhdf5_hl_cpp.dll Extracting Librarybinhdf5_tools.dll Extracting LibraryincludeH5ACpkg.h Extracting LibraryincludeH5ACpublic.h Extracting LibraryincludeH5AbstractDs.h Extracting LibraryincludeH5Alltypes.h Extracting LibraryincludeH5Apkg.h Extracting LibraryincludeH5Apublic.h Extracting LibraryincludeH5ArrayType.h Extracting LibraryincludeH5AtomType.h Extracting LibraryincludeH5Attribute.h Extracting LibraryincludeH5B2pkg.h Extracting LibraryincludeH5B2public.h Extracting LibraryincludeH5Bpkg.h Extracting LibraryincludeH5Bpublic.h Extracting LibraryincludeH5Classes.h Extracting LibraryincludeH5CommonFG.h Extracting LibraryincludeH5CompType.h Extracting LibraryincludeH5Cpkg.h Extracting LibraryincludeH5Cpp.h Extracting LibraryincludeH5CppDoc.h Extracting LibraryincludeH5Cpublic.h Extracting LibraryincludeH5DOpublic.h Extracting LibraryincludeH5DSpublic.h Extracting LibraryincludeH5DaccProp.h Extracting LibraryincludeH5DataSet.h Extracting LibraryincludeH5DataSpace.h Extracting LibraryincludeH5DataType.h Extracting LibraryincludeH5DcreatProp.h Extracting LibraryincludeH5Dpkg.h Extracting LibraryincludeH5Dpublic.h Extracting LibraryincludeH5DxferProp.h Extracting LibraryincludeH5EApkg.h Extracting LibraryincludeH5Edefin.h Extracting LibraryincludeH5Einit.h Extracting LibraryincludeH5EnumType.h Extracting LibraryincludeH5Epkg.h Extracting LibraryincludeH5Epubgen.h Extracting LibraryincludeH5Epublic.h Extracting LibraryincludeH5Eterm.h Extracting LibraryincludeH5Exception.h Extracting LibraryincludeH5FApkg.h Extracting LibraryincludeH5FDcore.h Extracting LibraryincludeH5FDdirect.h Extracting LibraryincludeH5FDfamily.h Extracting LibraryincludeH5FDlog.h Extracting LibraryincludeH5FDmpi.h Extracting LibraryincludeH5FDmpio.h Extracting LibraryincludeH5FDmulti.h Extracting LibraryincludeH5FDpkg.h Extracting LibraryincludeH5FDpublic.h Extracting LibraryincludeH5FDsec2.h Extracting LibraryincludeH5FDstdio.h Extracting LibraryincludeH5FDwindows.h Extracting LibraryincludeH5FSpkg.h Extracting LibraryincludeH5FSpublic.h Extracting LibraryincludeH5FaccProp.h Extracting LibraryincludeH5FcreatProp.h Extracting LibraryincludeH5File.h Extracting LibraryincludeH5FloatType.h Extracting LibraryincludeH5Fpkg.h Extracting LibraryincludeH5Fpublic.h Extracting LibraryincludeH5Gpkg.h Extracting LibraryincludeH5Gpublic.h Extracting LibraryincludeH5Group.h Extracting LibraryincludeH5HFpkg.h Extracting 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Extracting LibraryincludeH5PBpkg.h Extracting LibraryincludeH5PLextern.h Extracting LibraryincludeH5PLpkg.h Extracting LibraryincludeH5PLpublic.h Extracting LibraryincludeH5PTpublic.h Extracting LibraryincludeH5PacketTable.h Extracting LibraryincludeH5Ppkg.h Extracting LibraryincludeH5Ppublic.h Extracting LibraryincludeH5PredType.h Extracting LibraryincludeH5PropList.h Extracting LibraryincludeH5Rpkg.h Extracting LibraryincludeH5Rpublic.h Extracting LibraryincludeH5SMpkg.h Extracting LibraryincludeH5Spkg.h Extracting LibraryincludeH5Spublic.h Extracting LibraryincludeH5StrType.h Extracting LibraryincludeH5TBpublic.h Extracting LibraryincludeH5Tpkg.h Extracting LibraryincludeH5Tpublic.h Extracting LibraryincludeH5VarLenType.h Extracting LibraryincludeH5Zpkg.h Extracting LibraryincludeH5Zpublic.h Extracting LibraryincludeH5api_adpt.h Extracting LibraryincludeH5overflow.h Extracting LibraryincludeH5pubconf.h Extracting LibraryincludeH5public.h Extracting LibraryincludeH5version.h Extracting Libraryincludeh5diff.h Extracting Libraryincludeh5tools.h Extracting Libraryincludeh5tools_dump.h Extracting Libraryincludeh5tools_ref.h Extracting Libraryincludeh5tools_str.h Extracting Libraryincludeh5tools_utils.h Extracting Libraryincludeh5trav.h Extracting Libraryincludehdf5.h Extracting Libraryincludehdf5_hl.h Extracting Librarylibhdf5.lib Extracting Librarylibhdf5_cpp.lib Extracting Librarylibhdf5_hl.lib Extracting Librarylibhdf5_hl_cpp.lib Extracting Librarylibhdf5_tools.lib Extracting Libraryliblibhdf5.lib Extracting Libraryliblibhdf5.settings Extracting Libraryliblibhdf5_cpp.lib Extracting Libraryliblibhdf5_hl.lib Extracting Libraryliblibhdf5_hl_cpp.lib Extracting Libraryliblibhdf5_tools.lib Extracting Librarybinlibpng16.dll Extracting Librarybinpng-fix-itxt.exe Extracting Librarybinpngfix.exe Extracting Libraryincludelibpng16png.h Extracting Libraryincludelibpng16pngconf.h Extracting Libraryincludelibpng16pnglibconf.h Extracting Libraryincludepng.h Extracting 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