Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
Previous · 1 . . . 187 · 188 · 189 · 190 · 191 · 192 · 193 . . . 309 · Next
Author | Message |
---|---|
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Thanks for your reply. In computing preferences, what is your switch between tasks time? That can also affect your ability to get work done on time. Is Einstein CPU or GPU or both for you? I am running GPU and the tasks are around 30 mins, but as you know, sometimes they bring out longer stuff. Are you doing anything else in the background non BOINC? Such as FAH or anything else requiring CPU time? |
johndad5 Send message Joined: 12 Aug 09 Posts: 7 Credit: 2,729,604 RAC: 0 |
Hello, I received Rosetta today for the first time in several weeks. It appears all is well now. My switch timing is 60 minutes for all of the tasks. This is the first time have run into problems with Rosetta in years. Happy that it now seems to be working. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,414,278 RAC: 20,081 |
I received Rosetta today for the first time in several weeks. It appears all is well now.You were just lucky to get some Rosetta 4.20 work as it was released. In the time between now & when you last got work there has been plenty of Python work available, but as you haven't taken any notice of what i posted about your cache resulting in missed deadlines & what you need to do to get more Python work, you will soon be out of work again. Grant Darwin NT |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
I received Rosetta today for the first time in several weeks. It appears all is well now.You were just lucky to get some Rosetta 4.20 work as it was released. Not exactly Grant, look at his machines. #1 is 4.2 and #2 is running python. The error tasks were invalid also by the wingman for the exact same reason, memory address error. So he has completed 6 pythons so far one #2 and bombed 3 due to errors in the task, since the wingman also suffered the same failure. So let him continue, it looks like he has the systems dialed in. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Johndad, Your one machine will run out of work soon when all the 4.2 tasks are used up in your system. Then you will be back to no work. So you might configure that machine to accept python or it goes idle. That or it just does other project work until the next batch of 4.2 comes. As we have said, 4.2 is very sporadic and disappears very fast. |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,414,278 RAC: 20,081 |
The error tasks were invalid also by the wingman for the exact same reason, memory address error.Those are the most recent Tasks. The pervious ones (that we could see at the time) all errored out due to missing the deadline. As the work flows, the cache will re-fill & deadlines will be missed, over & over again. Enough Python errors, and you're black listed. Grant Darwin NT |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
The error tasks were invalid also by the wingman for the exact same reason, memory address error.Those are the most recent Tasks. The pervious ones (that we could see at the time) all errored out due to missing the deadline. And that's what is annoying. Errors caused by their incompetentence count against us. At least we can come back. They should exclude tasks that error out on two systems. |
Kyle Craig Send message Joined: 18 Dec 17 Posts: 2 Credit: 126,343 RAC: 0 |
I just installed Boinc and added rosetta@home on a brand new laptop and I get this message: Rosetta@home: Notice from server VirtualBox jobs require hardware acceleration support. Your processor does not support the required instruction set. This is brand new laptop with i7 processor. How would it not support hardware acceleration? Is it that the processor is such a new model that is not recognized? How do I fix this? |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
What file in pythons is the equivalent of STDERR? Is that in the boinc_xxxx folder then the logs folder and the Vbox file or the Vbox Hardening? I had a task that I just killed that ran 1 day and I think 42 mins and got to 99.41% complete. In Vbox file I saw "interupts" increasing in number and wondered what that was about as I do not see that in a suspended task (shutting down for the night) that I looked at. I was trying to find out where if any errors occurred during its time running, but I could not see anything recognizable, just interupts. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Try to find in google how to enable virtualization on your laptop model. enable hardware virtualization [laptop model here] |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,414,278 RAC: 20,081 |
I just installed Boinc and added rosetta@home on a brand new laptop and I get this message:Virtualisation needs to be enabled in the BIOS, and Windows HyperV must be disabled in Windows programs & settings. And it'd be worth running the BOINC Benchmarks on that system so when you do get some work, you also get more than a token amount of Credit for it. Grant Darwin NT |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 272 Credit: 507,897 RAC: 334 |
Run “bcdedit /set hypervisorlaunchtype off” to disable hypervisor |
Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1725 Credit: 18,414,278 RAC: 20,081 |
Looks like they fixed the problem with those Tasks that ran OK on LINUX, but crashed & burned in seconds on Windows. Now they fail on all systems. Grant Darwin NT |
YAG Send message Joined: 13 Oct 19 Posts: 7 Credit: 13,015,426 RAC: 0 |
I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2264" in the preetham_gen_* tasks. |
computezrmle Send message Joined: 9 Dec 11 Posts: 63 Credit: 9,680,103 RAC: 0 |
The minimum number of residues for a cyclic peptide is 4. Nowadays you need a specialist for nearly everything. They obviously don't have a can-count-to-4-specialist on their payroll. |
wynx Send message Joined: 4 Feb 11 Posts: 1 Credit: 4,611,748 RAC: 273 |
I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). Getting the same thing here, lots of preetham_gen tasks with this issue atm. |
Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0 |
I haven't seen a working (on Windows) Rosetta 4.20 in ages. These preetham tasks appear to have problems: preetham_gen_16837_0001_0001_0_SAVE_ALL_OUT_2911317_735_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @preetham_gen_16837_0001_0001_0.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1704144 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: ......srcprotocolscyclic_peptide_predictSimpleCycpepPredictApplication.cc line: 2264 BOINC:: Error reading and gzipping output datafile: default.out 14:08:09 (12636): called boinc_finish(1) </stderr_txt> ]]> |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Got the same thing: https://boinc.bakerlab.org/rosetta/result.php?resultid=1477896014 |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 9,863 |
Every single one failing, a thousand of them on 7 different computers. Until today, 98% of the 4.2s worked. |
Victor Wood Send message Joined: 3 Mar 20 Posts: 1 Credit: 6,564,469 RAC: 0 |
I am not sure if this is the same issue, but om both my M1 Macs I get work units offered, the download is almost nothing, (0.57Kb I saw once) and then I get once the tasks start "Computational Error" on all work units. I have stopped fetching new units for now. |
Message boards :
Number crunching :
Problems and Technical Issues with Rosetta@home
©2024 University of Washington
https://www.bakerlab.org