Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
You may have installed the M2 drive on a shared PCI express lane. Look at your motherboard manual and see what you can do. For example, my motherboard has two M2 slots. One disables one of the PCI express sockets. If it's an adapter card you're using, try another slot.There are three major kinds of GPUs - Nvidia, AMD, and Intel. You may need to match the kind BOINC sees to the kind or kinds the applications are written to be able to use. Take a look here https://www.manualslib.com/manual/1435811/Msi-X470-Gaming-Pro.html?page=32#manual and read the text to the side of the graphic. I am in slot 2_1 As for slot 2_2 I am not sure what I have set up for SATA ports. I rarely go in there. But I don't have much for SATA gear. DVD ROM and HDD and SDD I think. So I could probably move them to other ports if 1 is not available. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
Take a look here https://www.manualslib.com/manual/1435811/Msi-X470-Gaming-Pro.html?page=32#manual and read the text to the side of the graphic.Since you're in 2_1, that says it doesn't disable anything. So you should be fine there. 2_1 says PCI Express M2s only, but I assume you have one of those or it wouldn't work at all. There is something else strange afoot, probably drivers. Take a look here, where Jord managed to sort the same error on Seti Boinc: https://setiathome.berkeley.edu/forum_thread.php?id=84281#1996931 Or did you do something wrong shifting Boinc to the new drive? See another post by Jord, which I followed successfully when putting my Boinc onto a second drive: https://setiathome.berkeley.edu/forum_thread.php?id=82100#1898040 |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Take a look here https://www.manualslib.com/manual/1435811/Msi-X470-Gaming-Pro.html?page=32#manual and read the text to the side of the graphic.Since you're in 2_1, that says it doesn't disable anything. So you should be fine there. 2_1 says PCI Express M2s only, but I assume you have one of those or it wouldn't work at all. I'll have to try this tonight and see. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
something of interest, I can not update the firmware on the drive. Software, yes. Even though Samsung Magician says there is a firmare update available and tries to install it, it fails. I checked my SATA ports, they are all in use. So I can't install the drive down under the GPU's near the SATA ports. So I am stuck in PCIE location. The HDD is a terrabyte and barely full, so I can go that way. First I have to clear out the existing work 1 full day plus 1 day extra So tomorrow night I can uninstall BOINC and take the M.2 drive out and see what happens. I wonder if I have a defective drive or if somehow the M.2 PCIE location interferes with the GPU function somehow. Is this something for the BOINC forum? |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
something of interest, I can not update the firmware on the drive.There are two types of drives, SATA and PCI-express. Yours is PCI-Express, it must be or it would not have worked in the first slot, which is PCI-Express only. If you put it in the second slot, it will consume some PCI-Express lanes, disabling one of the PCI-Express sockets. If you don't need to have a card in that socket, do that. It won't use a SATA port since it's capable of PCI-Express mode. In socket 1 it shouldn't be interfering with anything. And I can't understand how F&H works but not Boinc, as they should be doing similar things with your GPU. Try the other slot, and/or buy an adapter to put it into a PCI-Express socket, or try it in another machine. It does sound a bit odd that you can't update it. And if it's faulty I suppose it could be buggering something up in the communications on the motherboard. The fancy method of moving Boinc to another drive is to keep your work units. If you're running it down to zero anyway, you can just install from scratch. Just keep a copy of any app configs you made etc as they're a pain to set up. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
I have taken a look and fear that you cpu doesn't have enough pcie cpu lanes to support the 2 graphics cards and the m.2 at the same time unfortunately. I fear this is the cause of the current issues you are experiencing. Tech support at the store |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
I have taken a look and fear that you cpu doesn't have enough pcie cpu lanes to support the 2 graphics cards and the m.2 at the same time unfortunately. I fear this is the cause of the current issues you are experiencing.State your CPU and graphics cards in use and I'll investigate. Something you could try is putting a GPU into a different slot. Some slots have less lanes, which will slow down communication with the graphics card, but that won't be noticeable unless you play games on it. If you play games, stick the non-gaming card on a different slot. The MB manual will tell you how many lanes on each slot. You can also sometimes see there are less physical pins in some of them. The ones further down the board, (away from the CPU) are the ones with less lanes. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
I have taken a look and fear that you cpu doesn't have enough pcie cpu lanes to support the 2 graphics cards and the m.2 at the same time unfortunately. I fear this is the cause of the current issues you are experiencing.State your CPU and graphics cards in use and I'll investigate. MSI 470x gaming Plus 1 x GTX 1050 1 x. GTX 1080 Using PCIe slots 1 and 2 Slot 3 unused (GPU does not fit very well there). Ryzen 3700x CPU Store does not say motherboard. Rather they say the CPU is out of PCIe channels. But then we get into PCIe 3 and type 4. So how many channels of what kind are the GPU'S using? And how many channels of what kind does the CPU have? I have read that the CPU alone uses 4 type 4 channels for itself. Also generalized information says there are 24 channels (of which type?) on the CPU. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
The type is irrelevant when counting them. If your CPU has 20 v4 channels, that means they can all go up to v4 speed. If an old GPU connects at v2 speed, that still uses up the same number of channels, they just run slower.I have taken a look and fear that you cpu doesn't have enough pcie cpu lanes to support the 2 graphics cards and the m.2 at the same time unfortunately. I fear this is the cause of the current issues you are experiencing.State your CPU and graphics cards in use and I'll investigate. 4 channels are reserved to connect to the motherboard's chipset, so yes, you have 20 left from the CPU for stuff you plug in. It's a pity you don't have a 570 motherboard, that motherboard's chipset provides another 16 lanes itself, so you'd now have a total of 36 lanes. Anyway, you've got 20 to play with. And your board only allows v3, don't worry v4 is only required for extreme gaming on the very latest cards. Both your GPUs support up to 16 lanes, and will presumably take them all if the socket has them. Now your board only does 16,0 or 8,8 lane configurations for the PCI express sockets, so if you have two GPUs, they get 8 lanes each. So you should have 4 lanes left. Ah, it looks like 16 lanes go to PCI-express sockets 1 and 2, either all to slot 1 or 8 to each. The other 4 go to slot 3 or the SECOND M2 slot. I can't find out where the first M2 slot takes its lanes from, but perhaps it's buggering up the GPU slots. So trying it in M2 slot 2 might work. Not that you'd want to do it, but I connect GPUs via a USB lead (with a convertor at each end to change to and from PCI express - they were designed for bitcoin miners). You can connect huge numbers of GPUs this way as you can get quad adapters, you just have to physically house them somewhere, and provide a lot of amps at 12V for the power connectors (I use 85 amp LED PSUs from Ebay). They only take up one lane each, and for Boinc that's fine. In fact when you use a quad adapter, you get 4 cards sharing one lane on one socket, and you can even daisy chain that for 16 etc. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
The type is irrelevant when counting them. If your CPU has 20 v4 channels, that means they can all go up to v4 speed. If an old GPU connects at v2 speed, that still uses up the same number of channels, they just run slower.I have taken a look and fear that you cpu doesn't have enough pcie cpu lanes to support the 2 graphics cards and the m.2 at the same time unfortunately. I fear this is the cause of the current issues you are experiencing.State your CPU and graphics cards in use and I'll investigate. oooeff.....to much to digest at 1145 at night. I'll try to reread it at lunch. BUT there still is a problem. Mounting the M.2 in the other bracket takes out a SATA port. I have none to spare. 1 SSD 1 HDD - I think that is connected via SATA 1 DVD ROM 1 cable that is two wires that disappears to the backside of the motherboard somewhere or goes under the case opening to somewhere. And I have only 4 ports. All I know is I have 4 wires and 4 ports and the MOBO book says using the SATA or whatever slot will take out SATA #1 BTW, can you link to these adaptors and then say where they go on the MOBO? If that is a way to get around things and not to expensive, then I will try that. But I have to hurry, I have only a 2 week refund period and then Im out a hundred plus. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
oooeff.....to much to digest at 1145 at night.No, it will not take out a SATA port. That only happens if you plug in a SATA M2. Yours is a PCI Express M2. It will take out the third PCI Express slot instead. From your motherboard specs: "SATA1 port will be unavailable when installing SATA M.2 SSD in M2_2 slot. PCI_E6 slot will be unavailable when installing PCIe M.2 SSD in M2_2 slot." This is what you're after, although you say you don't like buying from Ebay, but I'm sure you can get them elsewhere, possibly 2nd hand from a Bitcoin user. https://www.ebay.co.uk/itm/224796842885 The little card plugs into your PCI-Express slot. The blue cable connects that to the larger card, which you plug the GPU into. It's basically just moving the GPU physically away from the board, but it also only takes up one lane. The other part is just a power adapter incase you don't have enough plugs on your PSU. Or the caviar version for 4 cards :-) https://www.ebay.co.uk/itm/304228336923 By the way, that 4th thing you mention about 2 wires coming from the 4th SATA port, seems very odd, do you have an esata port on the back of the case? You could disconnect that if you ever wanted to add another SATA drive. And you can buy cards to give you more SATA ports. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
oooeff.....to much to digest at 1145 at night.No, it will not take out a SATA port. That only happens if you plug in a SATA M2. Yours is a PCI Express M2. It will take out the third PCI Express slot instead. From your motherboard specs: Interesting. I'll have to look tonight. It's get ready for work time. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
oooeff.....to much to digest at 1145 at night.No, it will not take out a SATA port. That only happens if you plug in a SATA M2. Yours is a PCI Express M2. It will take out the third PCI Express slot instead. From your motherboard specs: Looking at the book, it appears I have 6 SATA ports, so if I lose 1 to the m.2 I still have 1 left. That's ok. What do you think? |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
I don't like hot drinks. Orange juice or vodka please, or both.Just checking in because I had a fair few Rosetta 4.20 tasks come down.YOU!! You stole them! I wanted those. I'm going to hunt you down, and I mean physically! I ran into some trouble with vodka many years ago, so I don't keep it (or anything) around any more. Looks like it's orange for you. Which I'll need to get as I managed to grab a whole lot more Rosetta tasks earlier today - until they ran out again... |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
Robetta, as far as I can tell, is separate from Rosetta@home and is used mostly by researchers outside of the Baker Lab/IPD. It's an interface for users who wish to get computing power for their jobs. While that may be largely true, it may not be exclusively true. If you see "bcov" in the task name I believe that's Brian Coventry who is (or certainly was at one time) a researcher at Rosetta. He posted a few messages here when the Covid research started in March & April 2020 and was clearly right in the thick of development here |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2146 Credit: 41,570,180 RAC: 8,210 |
Sid Celery posted something a few months ago that he received from Admin or someone like that who said that the Python job that had been submitted by one of the IPD researchers was "huge".It's not that big, it's only a few million tasks. I've seen the queue at 15 million. But maybe that was several projects at once. That was true. I think they meant 2.2m was <relatively> huge for Python tasks, because it's also true we've had 20m Rosetta tasks to wade through from around April last year when the RAM demands started going through the roof. Which kind of makes Peter's point again |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 828 |
Robetta, as far as I can tell, is separate from Rosetta@home and is used mostly by researchers outside of the Baker Lab/IPD. It's an interface for users who wish to get computing power for their jobs. Yes, that's why I said "mostly". I've seen those "bcov" tasks many times but I don't think they were submitted via Robetta since they had no rb_ name. Edit: Searching "bcov" as a user name on Robetta doesn't yield any results. I do remember that the first Coronavirus work units came from Robetta, having been submitted by something called the Seattle Infectious Disease Research Center or something like that and it was related/joint work to Baker Lab/IPD or at least UW. If I recall correctly, of course. Edit: It's called the Seattle Structural Genomics Center for Infectious Disease (SSGCID). Seems like it's part of a Consortium including UW and there was joint work with the Baker Lab per this page and this was one of the first COVID jobs . Things moved fast back then. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
Looking at the book, it appears I have 6 SATA ports, so if I lose 1 to the m.2 I still have 1 left.You will not lose a SATA port. Your M2 drive is not SATA. M2 has two connections in it, PCI-Express and SATA. The slot on your board will take two different types of drive. Only the SATA drives eat a SATA port. Yours is PCI-Express so eats PCI-Express lanes. On the second M2 socket, it will disable the third PCI-Express socket, which you aren't using, so that's fine. All your SATA ports will continue to function as normal. Plug your M2 drive into the second socket and leave everything else as it is. This should allow everything to run normally. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 12,116,986 RAC: 4,044 |
What trouble did Vodka cause you?I don't like hot drinks. Orange juice or vodka please, or both.I ran into some trouble with vodka many years ago, so I don't keep it (or anything) around any more. Looks like it's orange for you. Which I'll need to get as I managed to grab a whole lot more Rosetta tasks earlier today - until they ran out again...I read that as Ribena, I must be thirsty. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Looking at the book, it appears I have 6 SATA ports, so if I lose 1 to the m.2 I still have 1 left.You will not lose a SATA port. Your M2 drive is not SATA. M2 has two connections in it, PCI-Express and SATA. The slot on your board will take two different types of drive. Only the SATA drives eat a SATA port. Yours is PCI-Express so eats PCI-Express lanes. On the second M2 socket, it will disable the third PCI-Express socket, which you aren't using, so that's fine. All your SATA ports will continue to function as normal. Plug your M2 drive into the second socket and leave everything else as it is. This should allow everything to run normally. Nope. Because the PCIe lanes are full on the CPU. But one other question, where does the PCI slots board on that expansion unit go? I see the little one that goes in the slot, but the big one? (the 4x PCI-USB) |
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Problems and Technical Issues with Rosetta@home
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