Application version Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1046157137, and WU: 942471806.
Status: Error while computing.
Errors: Too many errors (may have bug) Too many total results.
Outcome: Computation error.
Errors: Error while computing.
Exit status: 1 (0x00000001) Unknown error code.
Stderr output: Incorrect function. (0x1) - exit code 1 (0x1)

ERROR: scorefxn ScoreFunction already exists in the basic::datacache::DataMap, possibly as a default scorefxn. Please rename.
ERROR:: Exit from: ......srcprotocolsjd2parserScoreFunctionLoader.cc line: 208
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Exit code and error messages again basically the same as with previous host trying to crunch this task. Appears may be a problem with the task itself and that this series of tasks may need to be reviewed. Hopefully not too many currently in circulation. Thank you.

Just had the batch of my Rosetta Mini 3.78 tasks error out.
These were apparently close to finishing up

This happened after a Windows 10 Power Management resumption.

Noticed in the log
30/03/2020 10:25:27 PM | Rosetta@home | [error] Signature verification failed for minirosetta_3.78_windows_x86_64.exe

30/03/2020 8:15:33 PM |  | Windows is suspending operations
30/03/2020 8:15:33 PM |  | Suspending computation - requested by operating system
30/03/2020 10:25:27 PM |  | Resuming after OS suspension
30/03/2020 10:25:27 PM |  | Resuming computation
30/03/2020 10:25:27 PM | Rosetta@home | [error] Signature verification failed for minirosetta_3.78_windows_x86_64.exe
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0_r617624362_0 for task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0_r2074106369_0 for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0_r472385156_0 for task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0_r1923694651_0 for task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0_r1982475840_0 for task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0_r1982953482_0 for task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0_r2104020628_0 for task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0_r1329078535_0 for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0_r156816170_0 for task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0_r2055452008_0 for task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0_r303472395_0 for task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0_r1828763038_0 for task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0 absent
30/03/2020 10:25:38 PM | Rosetta@home | Starting task 7wu6ku8s_jhr_design1_COVID-19_SAVE_ALL_OUT_903146_1_0
30/03/2020 10:25:38 PM |  | Windows is resuming operations

So they WERE running, then were suspended by Windows, and then got a signature error when they restarted? I can only think a virus checker may have modified the program while it was asleep. The signatures are checked when the tasks first download.

If this was the first that the 3.78 was running in a long time, it again would indicate a virus scan resulted in modifying the program. Since the program is shared with all WUs that use it, it may have been download to your machine some time ago, and has been unused while waiting for work with that version to come down.

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Rosetta Moderator: Mod.Sense

It could have be the windows virus scanner maybe.
Otherwise I'm a new user migrated from SETI@Home so all files were only downloded in the last week.

It's just the high number of fails. appeared worrisome.

note: It since downloaded a fresh version of MiniRosetta and has successfully completed several hp100 wus.

This probably has been reported, but just in case. Almost all Rosetta Mini v3.78 units fail to download:

4/10/2020 3:50:28 AM | Rosetta@home | Started download of minirosetta_database_d0bf94b.zip
4/10/2020 3:50:30 AM | | Project communication failed: attempting access to reference site
4/10/2020 3:50:30 AM | Rosetta@home | Temporarily failed download of minirosetta_database_d0bf94b.zip: transient HTTP error
4/10/2020 3:50:30 AM | Rosetta@home | Backing off 03:44:38 on download of minirosetta_database_d0bf94b.zip
4/10/2020 3:50:32 AM | | Internet access OK - project servers may be temporarily down.

It seems to go circles for days until I click Abort Transfer button.

Every time download fails I see the same error regarding minirosetta_database_d0bf94b.zip file. All other files from Rosetta Mini WU seem to go through download process just fine.

Rosetta v4.12, on the other hand, works without a single issue. So do all WCG projects.

This probably has been reported, but just in case. Almost all Rosetta Mini v3.78 units fail to download:

That is interesting. Over half of my Rosettas on eight machines (Ubuntu 18.04.4) are 3.78, and I have had no problems downloading.
Maybe it is a temporary problem.

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Which Rosetta version do that tasks that still show files downloading indicate will run?

The only thing I can think of would be an anti-virus program getting in the way of the download. Seems unlikely the server would pick that particular file to have trouble downloading to you.

You might try resetting the project (beware this aborts all of the work units you currently have, so you might want to complete and report some of them first). This refreshes all of the programs and DB files.

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Rosetta Moderator: Mod.Sense

@Mod.Sense:

What worked for me is that I copied minirosetta_database_d0bf94b.zip from some other machine to c: ProgramData BOINC projects boinc.bakerlab.org_rosetta. After that download task for minirosetta_database_d0bf94b.zip cleared up by itself and WU started to work.

Is minirosetta_database_d0bf94b.zip some sort of generic info database for all Rosetta Mini projects?

If I see failures again, I will try to play with installed anti-virus software.

The database files vary by task. But yes, I believe they contain a reference library of known protein configurations. Some of the methods of search use these reference libraries for clues on the protein being studied.

Any file, such as the database, may be used by multiple tasks. BOINC Manager keeps track of it all, and avoids downloading the same file again for another task, if it already has the file on board.

Glad to hear you found a way around the problem.

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Rosetta Moderator: Mod.Sense

I don't have any errors with Rosetta Mini 3.78 (tasks like conducting_fiber_fold_........). But my CPU seems to be unstable under load. It goes very often on pause. I set already the pause for other programs load on 80% (was 25% by BOINC default). I also changed less available cores (6) for folding and 2 for system. So it's a bit strange. Normal Rosetta 4.12 tasks did give me continu load, even at 90% or 100% cores (7 or 8) and without any strange behavior.

Application version: Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1144179262, and WU: 1029849717.
Status: Validate error.
Errors: Too many errors (may have bug) Too many total results.
Outcome: Validate error.
Exit status: 0 (0x00000000)
Stderr output:

======================================================
DONE :: 12 starting structures 26635.9 cpu seconds
This process generated 12 decoys from 12 attempts
======================================================
BOINC :: WS_max 3.94908e+008

My host was the second to crunch this WU. The original host (using app version Rosetta Mini v3.78
x86_64-pc-linux-gnu) ended with computation error resulting from:

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 195
[0xdc5adaa]
[0x8056003]
[0xdf0cfd8]
[0x8048131]
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Just had a bunch of mini rosetta fail:

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
app_version download error: couldn't get input files:
<file_xfer_error>
<file_name>database_357d5d93529_n_methyl.zip</file_name>
<error_code>-120 (RSA key check failed for file)</error_code>
<error_message>signature verification failed</error_message>
</file_xfer_error>
</message>
]]>

However also increased nr of cores in use, not certain if it was a bad batch or if using 10 out of 12 cores was too much (I 6800K @3.5 GHz 32Gb.
Anybody had same issue??


Tried too go back to 6 cores, now waiting on Windows update.........

In general, a signature violation is the result when an anti-virus has modified or quarantined a downloaded file. The methyl zip file is also quite large. So perhaps there was an issue during its download.

So, shouldn't have anything to do with how many cores are active etc. But there may be other issues.

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Rosetta Moderator: Mod.Sense

I decided to try that on my Windows 10 computer. Surprise - if Windows 10 even includes IE, it is very well hidden.

It is hidden but it is a last resort browser if/when the original EDGE was broken or a website doesn't tolerate anything else (yes, incredible but possible).

Tom

---

Help, my tagline is missing..... Help, my tagline is......... Help, m........ Hel.....

I thought MiniRosetta had expired with all tasks returned, but I just got one and I see there are 7000 new tasks out there <sigh>

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I thought MiniRosetta had expired with all tasks returned, but I just got one and I see there are 7000 new tasks out there <sigh>

MiniRosetta has a significantly smaller memory size and seems to schedule for a shorter run when I get those kinds of tasks. Is that what it is aimed at? Smaller/Slower machines?

Tom M

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Help, my tagline is missing..... Help, my tagline is......... Help, m........ Hel.....

MiniRosetta has a significantly smaller memory size and seems to schedule for a shorter run when I get those kinds of tasks. Is that what it is aimed at? Smaller/Slower machines?

No- Rsetta Mini tasks will generally run up to the Target CPU runtime, sometimes longer & they can use just as much RAM as some Rosetta tasks (well over 1GB).

---

Grant
Darwin NT

A researcher recently submitted a batch of minirosetta jobs. This should not happen again.

---

Application Unsent In progress
Rosetta Mini 2 148070

Argh!!
And with 8-day deadlines too

---

I have nine Mini Rosetta 3.78 WUs that are "Ready to report", but won't send out.

https://boinc.bakerlab.org/rosetta/results.php?userid=1244809

1191141390 1069662154 3763591 27 May 2020, 7:14:03 UTC 4 Jun 2020, 7:14:03 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191141559 1069662400 3763591 27 May 2020, 7:14:03 UTC 4 Jun 2020, 7:14:03 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140631 1069661530 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140634 1069661536 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140637 1069661542 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140640 1069661548 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140649 1069661554 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140652 1069661560 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64
1191140658 1069661572 3763591 27 May 2020, 7:12:24 UTC 4 Jun 2020, 7:12:24 UTC In progress --- --- --- Rosetta Mini v3.78
windows_x86_64

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