Minirosetta 3.73-3.78

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Profile [VENETO] boboviz

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Message 89649 - Posted: 27 Sep 2018, 5:32:15 UTC - in response to Message 89533.  

ERROR: ERROR: FragmentIO: could not open file 00001.200.9mers
ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233


After 2 years of this app there are errors again...
Debug it or abandon it to pass all on 4.x version, that's the question


Again, all "fadh_" same error
1031043219
1031043121
etc
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James W

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Message 89728 - Posted: 18 Oct 2018, 5:42:13 UTC
Last modified: 18 Oct 2018, 5:46:44 UTC

Application version Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1035025133, and WU: 932433296.
Status: Invalid.
Outcome: Validate error.
Errors: Error while computing.

Strange that the WU was given credit and even was considered the canonical WU. However, later determined in error??
name: foldit_2005364_0004_fold_and_dock_SAVE_ALL_OUT_686935_8779
application: Rosetta Mini
created: 16 Oct 2018, 17:49:03 UTC
canonical result: 1035025133
granted credit: 6.39

Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__rg_state ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_2 ... success!

ERROR: std::abs( coordsys_rot.det() - 1.0 ) < 1e-6
ERROR:: Exit from: ......srccoreposesymmetryutil.cc line: 884
called boinc_finish
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James W

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Message 89732 - Posted: 18 Oct 2018, 9:33:56 UTC

Application version Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1035036274, and WU: 932443176.
Status: Completed and validated.
Outcome: Success.
Continuing computation from checkpoint: chk_S_00047_FragmentSampler__rg_state ... success!
Continuing computation from checkpoint: chk_S_00047_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00047_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00047_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00047_FragmentSampler__stage4_kk_1 ... success!

ERROR: std::abs( coordsys_rot.det() - 1.0 ) < 1e-6
ERROR:: Exit from: ......srccoreposesymmetryutil.cc line: 884
called boinc_finish

This appears to be the same result as noted in my previous post (Message 89728), notably the stated errors. Why was that one considered a validation error and this one a valid WU? Also wondering why the WU in my previous post wasn't reassigned to another host if WU otherwise OK?
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fcbrants
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Message 89755 - Posted: 23 Oct 2018, 21:31:59 UTC

Hello!!

I'm getting an error, "<message>finish file present too long</message> after a WU has completed.

Win 7 SP2, Fully up2date 64 Bit, BOINC 7.12.1 x64, Rosetta Mini v3.78 windows_intelx86

This machine is my "daily driver" & I use it for other non-demanding tasks.

I WAS running BOINC on 100% of the CPU's & the machine DID get sluggish at times.

https://boinc.bakerlab.org/show_host_detail.php?hostid=1606827

https://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

I've searched this forum & couldn't find an answer...

This appears to be an old issue that's ostensibly been resolved, and it hasn't been discussed since 2016:

https://www.google.com/search?ei=ApjHW7A955e2BeO1tPAL&q=%22finish+file+present+too+long%22&oq=%22finish+file+present+too+long%22&gs_l=psy-ab.3..0i7i30.967651.971417..972092...0.0..0.54.103.2......0....1..gws-wiz.......0i71j0i22i30.6CEhGn3jHEY


<core_client_version>7.12.1</core_client_version>
<![CDATA[
<message>
finish file present too long</message>

I'm backing the "Use at Most" CPU's to 93.75% (30 of 32 threads, 15/16 cores) & setting the project to No New Tasks until I can get this resolved.

I did find messages in the error log:

10/22/2018 7:47:43 AM | Rosetta@home | Task jelva126_mut_5_9tcssm_73_K_0251_0001_0006_fragments_relax_SAVE_ALL_OUT_700558_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_relax_SAVE_ALL_OUT_700549_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva76_mut_5_4tcssm_73_K_0251_0001_0006_fragments_fold_SAVE_ALL_OUT_700633_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG99_DEHCFABG_s00880005aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700443_272_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva2_mut_5_10tcssm_61_K_0251_0001_0005_fragments_fold_SAVE_ALL_OUT_700582_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG62_CDEFGBAH_s006200026a3c1c99_0001_0001_fragments_fold_SAVE_ALL_OUT_700403_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva117_mut_5_8tcssm_73_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700548_115_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG55_BEDGHCFA_s00450008aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700395_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG88_DEFGBAHC_s008200032b122311_0001_0001_fragments_fold_SAVE_ALL_OUT_700431_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva130_mut_5_9tcssm_73_K_0251_0001_0010_fragments_fold_SAVE_ALL_OUT_700563_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ54_IGGH_A_B_C_F_G_D_7delE_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700139_290_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700549_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG60_BGDEHCFA_s005600026a3c1c99_0002_0001_fragments_fold_SAVE_ALL_OUT_700401_299_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva112_mut_5_8tcssm_73_K_0251_0001_0002_fragments_fold_SAVE_ALL_OUT_700543_164_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva21_mut_5_6tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700573_189_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva94_mut_5_6tcssm_73_K_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700653_188_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva25_mut_5_8tcssm_61_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700577_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG22_ADEHCFGB_s00150009aa336a56_0001_0001_fragments_fold_SAVE_ALL_OUT_700323_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva3_mut_5_10tcssm_61_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700593_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG240_GDEFCHAB_s015900036a3c1c99_0003_0001_fragments_fold_SAVE_ALL_OUT_700335_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva14_mut_5_4tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700565_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva15_mut_5_4tcssm_61_K_0251_0001_0009_fragments_fold_SAVE_ALL_OUT_700566_247_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva78_mut_5_4tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700635_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ73_IGGH_A_B_C_F_G_D_E_8_0251_0008_fragments_fold_SAVE_ALL_OUT_700160_329_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.

Most of the tasks mentioned in the error log do NOT show up here:

https://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

But this one does: https://boinc.bakerlab.org/result.php?resultid=1036002868

Please let me know what I can do to help troubleshoot the problem.

Thanks!!

Franko
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James W

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Message 89986 - Posted: 12 Dec 2018, 1:08:38 UTC
Last modified: 12 Dec 2018, 1:25:39 UTC

Application version Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1046167754, and WU: 942459814.
Status: Error while computing.
Errors: Too many errors (may have bug) Too many total results.
Outcome: Computation error.
Errors: Error while computing.
Exit status: 1 (0x00000001) Unknown error code.
Stderr output: Incorrect function. (0x1) - exit code 1 (0x1)
ERROR: scorefxn ScoreFunction already exists in the basic::datacache::DataMap, possibly as a default scorefxn. Please rename.
ERROR:: Exit from: ......srcprotocolsjd2parserScoreFunctionLoader.cc line: 208
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Exit code and error messages basically the same as with previous host trying to crunch this task. Previous host was running Linux OS. Appears may be a problem with the task. If this series of tasks is not currently being reviewed, maybe a review is needed. Thank you.
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James W

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Message 89988 - Posted: 12 Dec 2018, 10:13:39 UTC

Application version Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1046157137, and WU: 942471806.
Status: Error while computing.
Errors: Too many errors (may have bug) Too many total results.
Outcome: Computation error.
Errors: Error while computing.
Exit status: 1 (0x00000001) Unknown error code.
Stderr output: Incorrect function. (0x1) - exit code 1 (0x1)
ERROR: scorefxn ScoreFunction already exists in the basic::datacache::DataMap, possibly as a default scorefxn. Please rename.
ERROR:: Exit from: ......srcprotocolsjd2parserScoreFunctionLoader.cc line: 208
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Exit code and error messages again basically the same as with previous host trying to crunch this task. Appears may be a problem with the task itself and that this series of tasks may need to be reviewed. Hopefully not too many currently in circulation. Thank you.
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Cameron

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Message 92612 - Posted: 30 Mar 2020, 11:58:07 UTC

Just had the batch of my Rosetta Mini 3.78 tasks error out.
These were apparently close to finishing up

This happened after a Windows 10 Power Management resumption.

Noticed in the log
30/03/2020 10:25:27 PM | Rosetta@home | [error] Signature verification failed for minirosetta_3.78_windows_x86_64.exe

30/03/2020 8:15:33 PM |  | Windows is suspending operations
30/03/2020 8:15:33 PM |  | Suspending computation - requested by operating system
30/03/2020 10:25:27 PM |  | Resuming after OS suspension
30/03/2020 10:25:27 PM |  | Resuming computation
30/03/2020 10:25:27 PM | Rosetta@home | [error] Signature verification failed for minirosetta_3.78_windows_x86_64.exe
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0
30/03/2020 10:25:27 PM | Rosetta@home | [error] Couldn't restart task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0_r617624362_0 for task conducting_fiber_18_fold_and_dock_SAVE_ALL_OUT_902982_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0_r2074106369_0 for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0_r472385156_0 for task conducting_fiber_151_fold_and_dock_SAVE_ALL_OUT_903051_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0_r1923694651_0 for task conducting_fiber_104_fold_and_dock_SAVE_ALL_OUT_903031_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0_r1982475840_0 for task conducting_fiber_135_fold_and_dock_SAVE_ALL_OUT_903043_2373_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0_r1982953482_0 for task conducting_fiber_113_fold_and_dock_SAVE_ALL_OUT_903034_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0_r2104020628_0 for task conducting_fiber_161_fold_and_dock_SAVE_ALL_OUT_903057_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0_r1329078535_0 for task conducting_fiber_119_fold_and_dock_SAVE_ALL_OUT_903039_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0_r156816170_0 for task conducting_fiber_97_fold_and_dock_SAVE_ALL_OUT_903026_2377_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0_r2055452008_0 for task conducting_fiber_43_fold_and_dock_SAVE_ALL_OUT_902993_2376_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0_r303472395_0 for task conducting_fiber_116_fold_and_dock_SAVE_ALL_OUT_903037_2375_0 absent
30/03/2020 10:25:27 PM | Rosetta@home | Computation for task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0 finished
30/03/2020 10:25:27 PM | Rosetta@home | Output file conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0_r1828763038_0 for task conducting_fiber_111_fold_and_dock_SAVE_ALL_OUT_903033_2377_0 absent
30/03/2020 10:25:38 PM | Rosetta@home | Starting task 7wu6ku8s_jhr_design1_COVID-19_SAVE_ALL_OUT_903146_1_0
30/03/2020 10:25:38 PM |  | Windows is resuming operations
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Message 92623 - Posted: 30 Mar 2020, 13:47:13 UTC - in response to Message 92612.  

So they WERE running, then were suspended by Windows, and then got a signature error when they restarted? I can only think a virus checker may have modified the program while it was asleep. The signatures are checked when the tasks first download.

If this was the first that the 3.78 was running in a long time, it again would indicate a virus scan resulted in modifying the program. Since the program is shared with all WUs that use it, it may have been download to your machine some time ago, and has been unused while waiting for work with that version to come down.
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Cameron

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Message 92892 - Posted: 1 Apr 2020, 12:05:30 UTC - in response to Message 92623.  
Last modified: 1 Apr 2020, 12:07:03 UTC

It could have be the windows virus scanner maybe.
Otherwise I'm a new user migrated from SETI@Home so all files were only downloded in the last week.

It's just the high number of fails. appeared worrisome.

note: It since downloaded a fresh version of MiniRosetta and has successfully completed several hp100 wus.
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Eternum

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Message 94078 - Posted: 10 Apr 2020, 14:24:38 UTC
Last modified: 10 Apr 2020, 14:44:28 UTC

This probably has been reported, but just in case. Almost all Rosetta Mini v3.78 units fail to download:

4/10/2020 3:50:28 AM | Rosetta@home | Started download of minirosetta_database_d0bf94b.zip
4/10/2020 3:50:30 AM | | Project communication failed: attempting access to reference site
4/10/2020 3:50:30 AM | Rosetta@home | Temporarily failed download of minirosetta_database_d0bf94b.zip: transient HTTP error
4/10/2020 3:50:30 AM | Rosetta@home | Backing off 03:44:38 on download of minirosetta_database_d0bf94b.zip
4/10/2020 3:50:32 AM | | Internet access OK - project servers may be temporarily down.

It seems to go circles for days until I click Abort Transfer button.

Every time download fails I see the same error regarding minirosetta_database_d0bf94b.zip file. All other files from Rosetta Mini WU seem to go through download process just fine.

Rosetta v4.12, on the other hand, works without a single issue. So do all WCG projects.
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Jim1348

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Message 94080 - Posted: 10 Apr 2020, 15:29:29 UTC - in response to Message 94078.  

This probably has been reported, but just in case. Almost all Rosetta Mini v3.78 units fail to download:

That is interesting. Over half of my Rosettas on eight machines (Ubuntu 18.04.4) are 3.78, and I have had no problems downloading.
Maybe it is a temporary problem.
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Message 94082 - Posted: 10 Apr 2020, 15:29:55 UTC - in response to Message 94078.  

Which Rosetta version do that tasks that still show files downloading indicate will run?

The only thing I can think of would be an anti-virus program getting in the way of the download. Seems unlikely the server would pick that particular file to have trouble downloading to you.

You might try resetting the project (beware this aborts all of the work units you currently have, so you might want to complete and report some of them first). This refreshes all of the programs and DB files.
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Eternum

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Message 94087 - Posted: 10 Apr 2020, 15:59:11 UTC - in response to Message 94082.  
Last modified: 10 Apr 2020, 16:01:19 UTC

@Mod.Sense:

What worked for me is that I copied minirosetta_database_d0bf94b.zip from some other machine to c: ProgramData BOINC projects boinc.bakerlab.org_rosetta. After that download task for minirosetta_database_d0bf94b.zip cleared up by itself and WU started to work.

Is minirosetta_database_d0bf94b.zip some sort of generic info database for all Rosetta Mini projects?

If I see failures again, I will try to play with installed anti-virus software.
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Message 94088 - Posted: 10 Apr 2020, 16:20:48 UTC - in response to Message 94087.  
Last modified: 10 Apr 2020, 16:23:41 UTC

The database files vary by task. But yes, I believe they contain a reference library of known protein configurations. Some of the methods of search use these reference libraries for clues on the protein being studied.

Any file, such as the database, may be used by multiple tasks. BOINC Manager keeps track of it all, and avoids downloading the same file again for another task, if it already has the file on board.

Glad to hear you found a way around the problem.
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Message 94095 - Posted: 10 Apr 2020, 19:03:11 UTC

I don't have any errors with Rosetta Mini 3.78 (tasks like conducting_fiber_fold_........). But my CPU seems to be unstable under load. It goes very often on pause. I set already the pause for other programs load on 80% (was 25% by BOINC default). I also changed less available cores (6) for folding and 2 for system. So it's a bit strange. Normal Rosetta 4.12 tasks did give me continu load, even at 90% or 100% cores (7 or 8) and without any strange behavior.
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James W

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Message 94314 - Posted: 13 Apr 2020, 4:23:17 UTC

Application version: Rosetta Mini v3.78 windows_intelx86
Device: 1759960, Task: 1144179262, and WU: 1029849717.
Status: Validate error.
Errors: Too many errors (may have bug) Too many total results.
Outcome: Validate error.
Exit status: 0 (0x00000000)
Stderr output:
======================================================
DONE :: 12 starting structures 26635.9 cpu seconds
This process generated 12 decoys from 12 attempts
======================================================
BOINC :: WS_max 3.94908e+008

My host was the second to crunch this WU. The original host (using app version Rosetta Mini v3.78
x86_64-pc-linux-gnu) ended with computation error resulting from:
ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 195
[0xdc5adaa]
[0x8056003]
[0xdf0cfd8]
[0x8048131]
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Terrible T

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Message 94353 - Posted: 13 Apr 2020, 15:51:59 UTC

Just had a bunch of mini rosetta fail:

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<message>
app_version download error: couldn't get input files:
<file_xfer_error>
<file_name>database_357d5d93529_n_methyl.zip</file_name>
<error_code>-120 (RSA key check failed for file)</error_code>
<error_message>signature verification failed</error_message>
</file_xfer_error>
</message>
]]>

However also increased nr of cores in use, not certain if it was a bad batch or if using 10 out of 12 cores was too much (I 6800K @3.5 GHz 32Gb.
Anybody had same issue??


Tried too go back to 6 cores, now waiting on Windows update.........
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Message 94355 - Posted: 13 Apr 2020, 16:03:43 UTC - in response to Message 94353.  

In general, a signature violation is the result when an anti-virus has modified or quarantined a downloaded file. The methyl zip file is also quite large. So perhaps there was an issue during its download.

So, shouldn't have anything to do with how many cores are active etc. But there may be other issues.
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Tom M

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Message 94407 - Posted: 13 Apr 2020, 22:55:03 UTC - in response to Message 79733.  


I decided to try that on my Windows 10 computer. Surprise - if Windows 10 even includes IE, it is very well hidden.

It is hidden but it is a last resort browser if/when the original EDGE was broken or a website doesn't tolerate anything else (yes, incredible but possible).

Tom
Help, a tagline is missing..... Help, a tagline is......... Help, a........ Hel.....
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Sid Celery

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Message 95643 - Posted: 1 May 2020, 1:36:52 UTC

I thought MiniRosetta had expired with all tasks returned, but I just got one and I see there are 7000 new tasks out there <sigh>
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Message boards : Number crunching : Minirosetta 3.73-3.78



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