Message boards : Number crunching : minirosetta 2.17
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Guywad Send message Joined: 9 Apr 08 Posts: 1 Credit: 2,313,599 RAC: 0 |
I have two separate machines in two locations that have multiple results that all have the same uploading error message (Project file upload handler is missing). I tried rebooting each machine with no difference. Both are running Linux Redhat 13. |
iceweazel Send message Joined: 23 Feb 09 Posts: 1 Credit: 114,165 RAC: 0 |
You should check the main project page where they mention a major SAN storage problem has occurred again. Must be some pretty old junk to have the issues they've had. Heck I have a first gen SAN still chugging along here. (amongst others) Though not nearly the kind of disk activity they probably see. Give it a week or three and things should be back to normal. I have the same errorr on all my completed work units "Project file upload handler is missing". What should I do? |
aad Send message Joined: 5 Jan 06 Posts: 9 Credit: 194,243,052 RAC: 1,043 |
Hmmm.....strange....... From eight jobs, five uploaded normaly, but 3 won't upload. 12-1-2011 20:22:46 rosetta@home Started upload of patrick_test_01_rlbn_1fkb_IGNORE_THE_REST_NATIVE_22848_37_0_0 They're all 'patrick_test' jobs! Maybe that's the thruth meaning of 'ignore the rest'? Should I delete the stuff? |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Should I delete the stuff? No. Rosetta Moderator: Mod.Sense |
EvoDude Send message Joined: 6 Nov 05 Posts: 21 Credit: 52,425 RAC: 0 |
Should I delete the stuff? And that's all you've got to say in response to all the faults and complaints? What a joke of an admin this project has. I've got better things to donate my PC time to than this crap. Bye Bye Rosetta. |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
EvoDude, I am a volunteer moderator, nothing more. I don't have any additional information to offer on the servers or plans or problems, nor do I have any access to post messages on the project homepage nor access to it's servers. So please, don't leave on my account. The "Project Administrator" title posted next to my profile name is due to the standard BOINC server code, and is not an indication of any duties. Rosetta Moderator: Mod.Sense |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2145 Credit: 41,550,899 RAC: 8,846 |
EvoDude, I am a volunteer moderator, nothing more. I don't have any additional information to offer on the servers or plans or problems, nor do I have any access to post messages on the project homepage nor access to it's servers. So please, don't leave on my account. The "Project Administrator" title posted next to my profile name is due to the standard BOINC server code, and is not an indication of any duties. Don't beat yourself up. EvoDude's 0 RAC leads me to discover he hasn't run a single task here since 2007 anyway... Makes you wonder... or not... |
EvoDude Send message Joined: 6 Nov 05 Posts: 21 Credit: 52,425 RAC: 0 |
EvoDude, I am a volunteer moderator, nothing more. I don't have any additional information to offer on the servers or plans or problems, nor do I have any access to post messages on the project homepage nor access to it's servers. So please, don't leave on my account. The "Project Administrator" title posted next to my profile name is due to the standard BOINC server code, and is not an indication of any duties. So, because I've been busy doing other work, particularly at Rosetta's test project where I'm 14th in the world and highest, by a country mile, in the UK means I can't have an opinion on the handling of the volunteers in this part of the project? Get real mate and check your facts properly before you cast aspersions. I PM'd the Mod in question as soon as he responded to discuss this privately, again something you wouldn't know, but let's not let actual fact get in the way of you having a personal dig at me. My suggestion:- Keep your nose out of my business till you know what you are talking about. |
aad Send message Joined: 5 Jan 06 Posts: 9 Credit: 194,243,052 RAC: 1,043 |
Should I delete the stuff? Oke There's still a week to go before they expire. But nnw for now before it clutters my pc! |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2145 Credit: 41,550,899 RAC: 8,846 |
Whatever opinion you want to express, EvoDude, your "bye bye Rosetta" was both impotent and petulant, irrespective of what you've done on Ralph. However limited the front page info it's been apparent the failure was extensive and mod.sense's reply seems as complete and accurate now as it did at the time. As was mine. |
EvoDude Send message Joined: 6 Nov 05 Posts: 21 Credit: 52,425 RAC: 0 |
Whatever opinion you want to express, EvoDude, your "bye bye Rosetta" was both impotent and petulant, irrespective of what you've done on Ralph. However limited the front page info it's been apparent the failure was extensive and mod.sense's reply seems as complete and accurate now as it did at the time. As was mine. Aye aye - whatever. Why you needed to get personal about it I don't know but my post had nothing to do with you and maybe if you spent more time addressing the failings in your own site it would have less dead/broken links and people on here would be allowed to have freedom of expression and state their opinion without fear of unwarranted personal abuse. Subject closed as far as I'm concerned but no doubt you will want to carry on your own wee petulant, impotent rant. Doesn't make you right, you know. |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Tasks starting with casd_ seem to be failing after 30 seconds of runtime, and then reporting with validation errors as per reports here. They all seem to show 100 starting structures and 100 decoys... and 1200 CPU seconds in the output, but around 40 in the task's reported CPU time. Rosetta Moderator: Mod.Sense |
Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 26,499,247 RAC: 15,330 |
I caught several tasks ending too early which mentioned in Dec - now on my own computer. Dependence(what may cause this) is not found - all looks as normal for me. The CPU target time was 2 hours and did not change. https://boinc.bakerlab.org/rosetta/result.php?resultid=403175973 https://boinc.bakerlab.org/rosetta/result.php?resultid=403175972 https://boinc.bakerlab.org/rosetta/result.php?resultid=403005728 P.S. In general, I like the version 2.17. Over the last >2 months no serious crashes or memory leaks at all. |
[AF>france>pas-de-calais]symaski62 Send message Joined: 19 Sep 05 Posts: 47 Credit: 33,871 RAC: 0 |
I caught several tasks ending too early which mentioned in Dec - now on my own computer. Dependence(what may cause this) is not found - all looks as normal for me. yes # cpu_run_time_pref: 7200 sec = 2H https://boinc.bakerlab.org/rosetta/prefs.php?subset=project Target CPU run time => 2H > 4H, 8H, 12H, 1 day BOINC Update = rosetta@home :) |
Murasaki Send message Joined: 20 Apr 06 Posts: 303 Credit: 511,418 RAC: 0 |
I caught several tasks ending too early which mentioned in Dec - now on my own I think you are missing Mad Max's point. The preferred run time was set at 2 hours but the three tasks each lasted less than 30 minutes and generated 11 decoys at most. |
svincent Send message Joined: 30 Dec 05 Posts: 219 Credit: 12,120,035 RAC: 0 |
I've had some tasks with names starting with Ferredoxin-like_abinitio fail immediately on Mac with the following error: ERROR: Option matching -relax:fastrelax_repeats not found in command line top-level context. The tasks are : 405034651 405034650 404995301 404995300 Small point: the name for the last task (404995300) is 404995300 is Ferredoxin-lie_abinitio_SAVE_ALL_OUT_design_relax_fr28_009_23275_106_0. The k in like is missing. |
KN_Ikari Send message Joined: 27 May 09 Posts: 1 Credit: 588,946 RAC: 0 |
I have the same problem. See my Result page if you want more information. |
Saenger Send message Joined: 19 Sep 05 Posts: 271 Credit: 824,883 RAC: 0 |
I have the same problem. See my Result page if you want more information. Same here on Linux. Edith says: You have to link host results, account results are hidden to all other users. See here for me: account and host |
Hank Barta Send message Joined: 6 Feb 11 Posts: 14 Credit: 3,943,460 RAC: 0 |
Also on Linux, and also apparently the same problem. Out of 24 complete work units since I set up BOINC/Rosetta yesterday, 9 have finished with the compute error "ERROR: Option matching -relax:fastrelax_repeats not found in command line top-level context" Can I presume that this represents a bug in the S/W or should I be looking for H/W problems? the latest result is: https://boinc.bakerlab.org/rosetta/result.php?resultid=405000927 (Interesting to note that two other machines I have crunching have not encountered compute errors. However they have faster processors so they may be getting different types of work units.) thanks, hank |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Can I presume that this represents a bug in the S/W or should I be looking for H/W problems? No, looks like retries consistently fail so looks entirely like an issue with how the specific tasks were created. So it will be hit and miss as to whether a given host is assigned any of the failing tasks. Nothing to do with their speed, or OS or etc. Rosetta Moderator: Mod.Sense |
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Number crunching :
minirosetta 2.17
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