minirosetta 2.14

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P . P . L .

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Message 67167 - Posted: 12 Aug 2010, 3:56:36 UTC

This one ran for 4sec, failed same as others.


https://boinc.bakerlab.org/rosetta/workunit.php?wuid=327013475

lrm_jorj_combined_torsion_it06_run01_A_rlbd_2cmx__SAVE_ALL_OUT_IGNORE_THE_RESTlr13_DECOY_21224_830_1

<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

( left out bits in middle )

Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...

ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_database/scoring/weights/dslf_weights.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 178
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>

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Profile Greg_BE
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Message 67170 - Posted: 12 Aug 2010, 10:02:08 UTC
Last modified: 12 Aug 2010, 10:10:01 UTC

Also a weights issue: lrm_jorj_combined_torsion_it06_run01_A_rlbd_1bmg__SAVE_ALL_OUT_IGNORE_THE_RESTlr5_DECOY_21224_996_1

also task lrm_jorj_combined_torsion_it06_run01_A_rlbd_1bmg__SAVE_ALL_OUT_IGNORE_THE_RESTlr10_DECOY_21224_913_0

and quite a few more, it would take to long to post them all here.


ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_databasescoring/weights/dslf_weights.wts exist
ERROR:: Exit from: ....srccorescoringScoreFunctionFactory.cc line: 178
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile AdeB
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Message 67173 - Posted: 12 Aug 2010, 15:54:36 UTC

T0624_refinement_1_5_topology_broker_SAVE_ALL_OUT.IGNORE_THE_REST_2_21730_1889_0
ERROR: ERROR: ArrayPool array size cannot be changed unless the ArrayPool is empty
ERROR:: Exit from: src/core/graph/ArrayPool.hh line: 296
BOINC:: Error reading and gzipping output datafile: default.out


AdeB
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Jochen

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Message 67174 - Posted: 12 Aug 2010, 17:22:24 UTC

cs-only-2-RrR43_9-13_20161_106_1
ERROR: rsd_type_list.size()
ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62
BOINC:: Error reading and gzipping output datafile: default.out


gunn_fragments_SAVE_ALL_OUT_-1lveA__20675_4867_1
ERROR: ct == final_atoms
ERROR:: Exit from: ....srccorescoringrms_util.cc line: 410
BOINC:: Error reading and gzipping output datafile: default.out


gunn_fragments_SAVE_ALL_OUT_-1lveA__20675_4642_1
ERROR: ct == final_atoms
ERROR:: Exit from: ....srccorescoringrms_util.cc line: 410
BOINC:: Error reading and gzipping output datafile: default.out


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Mike.Gibson

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Message 67271 - Posted: 18 Aug 2010, 19:41:11 UTC
Last modified: 18 Aug 2010, 19:42:02 UTC

I have preferences set to 24 hours crunching but 327442297 has now been crunching for 38 hours and is stuck at 60.034% although still clocking time up and the time to go is rising in proportion.

Should this be terminated? Is there any way it can be made to terminate without losing the results?

Mike
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Message 67273 - Posted: 18 Aug 2010, 20:06:50 UTC - in response to Message 67271.  

I have preferences set to 24 hours crunching but 327442297 has now been crunching for 38 hours and is stuck at 60.034% although still clocking time up and the time to go is rising in proportion.

Should this be terminated? Is there any way it can be made to terminate without losing the results?

Mike


The properties of that task will show you the CPU time used. Check it, jot down the time, then a minute later check it again. Did it use any CPU time during that minute? I am doubtful the task is getting any CPU time. If it were, the watchdog would have already caught the problem and reported the task result. So, I'm guessing you may have to suspend and then resume the task to get it back to using CPU time. It will probably then run through it's originally expected 24 hour runtime (i.e. another 8-10 hours).
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Mike.Gibson

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Message 67275 - Posted: 18 Aug 2010, 21:09:15 UTC - in response to Message 67273.  

I have preferences set to 24 hours crunching but 327442297 has now been crunching for 38 hours and is stuck at 60.034% although still clocking time up and the time to go is rising in proportion.

Should this be terminated? Is there any way it can be made to terminate without losing the results?

Mike


The properties of that task will show you the CPU time used. Check it, jot down the time, then a minute later check it again. Did it use any CPU time during that minute? I am doubtful the task is getting any CPU time. If it were, the watchdog would have already caught the problem and reported the task result. So, I'm guessing you may have to suspend and then resume the task to get it back to using CPU time. It will probably then run through it's originally expected 24 hour runtime (i.e. another 8-10 hours).


Many thanks. After suspending and resuming several times it finally restarted using CPU time, although it had been hogging one core for the last day without using CPU time.

Mike
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Message 67289 - Posted: 20 Aug 2010, 21:28:42 UTC

Frag_relax_2i9cA-20_PRODUCTIVE_SAVE_ALL_OUT_21745_32_0
Incorrect function. (0x1) - exit code 1 (0x1)
ERROR: rsd_type_list.size()
ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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P . P . L .

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Message 67306 - Posted: 23 Aug 2010, 4:38:44 UTC

This one erred after 12sec.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=329845625

lrm_jorj_combined_torsion_it06_run01_A_rlbd_1dzo__SAVE_ALL_OUT_IGNORE_THE_RESTlr13_DECOY_21224_8_1

<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

( left out bits in middle )

Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...

ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_database/scoring/weights/dslf_weights.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 178
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>

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Message 67308 - Posted: 23 Aug 2010, 12:16:06 UTC

This one failed after 80 seconds:

Frag_relax_1c8cA-14_PRODUCTIVE_SAVE_ALL_OUT_21745_208_1

ERROR: rsd_type_list.size()
ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62
BOINC:: Error reading and gzipping output datafile: default.out

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Message 67321 - Posted: 25 Aug 2010, 5:11:10 UTC
Last modified: 25 Aug 2010, 5:11:31 UTC

Hi.

Anyone else seeing a problem with these tasks, they seem to be running longer then they should and not checkpointing much.

THESE//intSpin2_1f0s_2gbn_ProteinInterfaceDesign_20Aug2010_


I have a few running now that have ran for over four hours and the last checkpoint was at 30min it has done over 140 models.

I have had others that have ran for over six hours and the last checkpoint was at ~3hrs and many models.
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Jochen

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Message 67326 - Posted: 25 Aug 2010, 8:49:27 UTC

Yes, some of the ...ProteinInterfaceDesign...-tasks show this behaviour.
You might want to have a look at this thread. It's more or less the same question.

cu Joe
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Evan

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Message 67348 - Posted: 25 Aug 2010, 22:21:14 UTC

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Evan

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Message 67426 - Posted: 29 Aug 2010, 8:50:40 UTC

two - unable to open weights:
lrm_jorj_combined_torsion_it06_run01_A_rlbn_1b3a_SAVE_ALL_OUT_IGNORE_THE_REST_NATIVE_21225_89

lrm_jorj_combined_torsion_it06_run01_A_rlbd_1unr__SAVE_ALL_OUT_IGNORE_THE_RESTlr13_DECOY_21224_89

and this one failed after 330 seconds

cs-only-2-TR80_8-7_20161_123

ERROR: rsd_type_list.size()
ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

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Evan

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Message 67455 - Posted: 30 Aug 2010, 8:39:01 UTC

another one here:
cs-td-2-ARF1_5-11_20162_130

ERROR: rsd_type_list.size()
ERROR:: Exit from: ....srccorefragmentFrame.cc line: 62
BOINC:: Error reading and gzipping output datafile: default.out

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Message 67502 - Posted: 1 Sep 2010, 0:16:19 UTC

What is a credit unit based on?
I have around 527. Thanks,
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H KYLE

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Message 67505 - Posted: 1 Sep 2010, 2:47:26 UTC - in response to Message 67502.  

What is a credit unit based on?
I have around 527. Thanks,


Visit https://boinc.bakerlab.org/rosetta/cert1.php (make sure you are logged in on top right).
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Message 67518 - Posted: 1 Sep 2010, 14:52:22 UTC - in response to Message 67502.  

What is a credit unit based on?
I have around 527. Thanks,


What is Credit
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P . P . L .

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Message 67560 - Posted: 3 Sep 2010, 3:44:09 UTC

This failed after 12 sec.

lrm_jorj_combined_torsion_it06_run01_A_rlbd_2hl7__SAVE_ALL_OUT_IGNORE_THE_RESTlr10_DECOY_21224_318

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=331004480

<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

( left out bits in middle )

Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_2hl7.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...

ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_database/scoring/weights/dslf_weights.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 178
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>

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Message 67575 - Posted: 3 Sep 2010, 21:50:43 UTC

This failed after 14 sec.

lrm_jorj_combined_torsion_it06_run01_A_rlbd_1r26__SAVE_ALL_OUT_IGNORE_THE_RESTlr8_DECOY_21224_522


https://boinc.bakerlab.org/rosetta/workunit.php?wuid=331161671

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

( left out bits in middle )

Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr8_1r26.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...

ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_database/scoring/weights/dslf_weights.wts exist
ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 178
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>


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