Minirosetta 1.90 and 1.91
Message boards : Number crunching : Minirosetta 1.90 and 1.91
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NightmareXX Send message Joined: 12 Jun 06 Posts: 24 Credit: 1,885,318 RAC: 0 |
05/08/2009 17:06:15|rosetta@home|Started download of boinc_rb1_1aiu.pdb How do I fix these errors? :( https://boinc.bakerlab.org/rosetta/results.php?hostid=986605&offset=20 |
Murasaki Send message Joined: 20 Apr 06 Posts: 303 Credit: 511,418 RAC: 0 |
Try installing a more recent version of BOINC. Version 6.4.7 is said to be quite stable (Version 6.4.5 has been working well for me since I installed it so I am sticking with that for now). Check the logs of your firewall and anti-virus software to see if either have been blocking files from downloading. |
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NightmareXX Send message Joined: 12 Jun 06 Posts: 24 Credit: 1,885,318 RAC: 0 |
I don't have a firewall or AV on my server and no, it doesn't have any virii either. I've updated to the latest version of BOINC but no luck, still the same problem. |
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amgthis Send message Joined: 25 Mar 06 Posts: 81 Credit: 203,879,282 RAC: 0 |
Anyone else having trouble with these w/u's bombing out after only 20 seconds or so? More output file absent errors? 05-Aug-2009 12:16:20 [rosetta@home] Starting task lr5_combine_mods_run01_rlbn_1enh_IGNORE_THE_REST_NATIVE_14608_23_0 using minirosetta version 190 05-Aug-2009 12:16:42 [rosetta@home] Computation for task lr5_combine_mods_run01_rlbn_1enh_IGNORE_THE_REST_NATIVE_14608_23_0 finished 05-Aug-2009 12:16:42 [rosetta@home] Output file RE_THE_REST_lr5_combine_mods_run01_rlbn_1enh_IGNONATIVE_14608_23_0_0 for task lr5_combine_mods_run01_rlbn_1enh_IGNORE_THE_REST_NATIVE_14608_23_0 absent |
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P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
05/08/2009 17:06:15|rosetta@home|Started download of boinc_rb1_1aiu.pdb You could try to reset project if you have not tried already, could not hurt! 
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m Send message Joined: 2 May 09 Posts: 12 Credit: 6,359,375 RAC: 9,931 
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05/08/2009 17:06:15|rosetta@home|Started download of boinc_rb1_1aiu.pdb I have just added Rosetta to the list on two boxes, one Windoze, one Linux and have this error on both. The project hasn't even started, not much to reset. Running BOINC 5.10.45 |
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Sid Celery Send message Joined: 11 Feb 08 Posts: 1982 Credit: 38,464,506 RAC: 14,964
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The ones that start "lr5_combine_mods_run01_rlbn_" have been problematic but It's the pattern I was thinking about earlier. Yifan seems to have spotted it up the thread (1st August) and dealt with it already, but it looks like we all had some in our buffers, working their way out of the system. At least, seeing as they only ran a few seconds, it didn't affect any of us much. However: 05/08/2009 17:06:45|rosetta@home|[error] Signature verification failed for minirosetta_database_rev31588.zip A few people seem to be still getting this (I certainly don't since the server issues got solved). I have no idea why it's occurring but someone at TPTB should see if they can spot what the issue is.  
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m Send message Joined: 2 May 09 Posts: 12 Credit: 6,359,375 RAC: 9,931
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05/08/2009 17:06:45|rosetta@home|[error] Signature verification failed for minirosetta_database_rev31588.zip A few people seem to be still getting this (I certainly don't since the server issues got solved). I have no idea why it's occurring but someone at TPTB should see if they can spot what the issue is.[/quote] Minirosetta 1.91 comes with database xxx_rev31589.zip and this downloads OK. So, namy thanks to TPTB. |
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P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
Hi. I've got another that went past 99, anyone? mini 1.90. ====================================================== DONE :: 125 starting structures 14234.5 cpu seconds This process generated 125 decoys from 125 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish
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Luciano Bastianello Send message Joined: 9 Sep 06 Posts: 4 Credit: 269,064 RAC: 0 |
My kaspersky internet security still block 1.91 application. |
Speedy Send message Joined: 25 Sep 05 Posts: 163 Credit: 800,690 RAC: 20 |
Short running task My time pref is 6 hours task ran for 3.11 hours 33 decoys from 33 attempt's. Is this normal? Have a crunching good day!! |
Marcus Hartsfield Send message Joined: 8 Aug 09 Posts: 1 Credit: 1,453 RAC: 0 |
I am not geting any work. Why is that? Sat Aug 8 04:57:31 2009 Starting BOINC client version 6.6.20 for powerpc-apple-darwin Sat Aug 8 04:57:31 2009 log flags: task, file_xfer, sched_ops Sat Aug 8 04:57:31 2009 Libraries: libcurl/7.19.4 OpenSSL/0.9.7l zlib/1.2.3 c-ares/1.6.0 Sat Aug 8 04:57:31 2009 Data directory: /Library/Application Support/BOINC Data Sat Aug 8 04:57:31 2009 Processor: 1 Power Macintosh Power Macintosh [Power Macintosh Model PowerMac4,5] [AltiVec] Sat Aug 8 04:57:31 2009 Processor features: Sat Aug 8 04:57:31 2009 OS: Darwin: 8.11.0 Sat Aug 8 04:57:31 2009 Memory: 512.00 MB physical, 26.06 GB virtual Sat Aug 8 04:57:31 2009 Disk: 111.65 GB total, 25.81 GB free Sat Aug 8 04:57:31 2009 Local time is UTC -7 hours Sat Aug 8 04:57:31 2009 Can't load library libcudart Sat Aug 8 04:57:31 2009 No coprocessors Sat Aug 8 04:57:31 2009 Not using a proxy Sat Aug 8 04:57:31 2009 rosetta@home URL: https://boinc.bakerlab.org/rosetta/; Computer ID: 1122167; location: (none); project prefs: default Sat Aug 8 04:57:31 2009 SETI@home URL: http://setiathome.berkeley.edu/; Computer ID: 4884798; location: (none); project prefs: default Sat Aug 8 04:57:31 2009 No general preferences found - using BOINC defaults Sat Aug 8 04:57:31 2009 Reading preferences override file Sat Aug 8 04:57:31 2009 Preferences limit memory usage when active to 256.00MB Sat Aug 8 04:57:31 2009 Preferences limit memory usage when idle to 460.80MB Sat Aug 8 04:57:31 2009 Preferences limit disk usage to 10.00GB Sat Aug 8 04:57:32 2009 SETI@home Restarting task 18fe09ab.18567.10706.16.10.48_0 using setiathome_enhanced version 603 Sat Aug 8 05:56:44 2009 rosetta@home Sending scheduler request: Requested by user. Sat Aug 8 05:56:44 2009 rosetta@home Requesting new tasks Sat Aug 8 05:56:49 2009 rosetta@home Scheduler request completed: got 0 new tasks Sat Aug 8 05:56:49 2009 rosetta@home Message from server: No work sent Sat Aug 8 05:56:49 2009 rosetta@home Message from server: (there was work for other platforms) Sat Aug 8 05:59:06 2009 rosetta@home Sending scheduler request: Requested by user. Sat Aug 8 05:59:06 2009 rosetta@home Requesting new tasks Sat Aug 8 05:59:11 2009 rosetta@home Scheduler request completed: got 0 new tasks Sat Aug 8 06:03:18 2009 rosetta@home Sending scheduler request: To fetch work. Sat Aug 8 06:03:18 2009 rosetta@home Requesting new tasks Sat Aug 8 06:03:23 2009 rosetta@home Scheduler request completed: got 0 new tasks Sat Aug 8 06:03:23 2009 rosetta@home Message from server: No work sent Sat Aug 8 06:03:23 2009 rosetta@home Message from server: (there was work for other platforms) Sat Aug 8 06:03:43 2009 rosetta@home Resetting project Sat Aug 8 06:03:48 2009 rosetta@home Sending scheduler request: To fetch work. Sat Aug 8 06:03:48 2009 rosetta@home Requesting new tasks Sat Aug 8 06:03:53 2009 rosetta@home Scheduler request completed: got 0 new tasks Sat Aug 8 06:03:53 2009 rosetta@home Message from server: Not sending work - last request too recent: 31 sec K. Marcus Hartsfield, M.A., MFT 415.286.3298 |
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Murasaki Send message Joined: 20 Apr 06 Posts: 303 Credit: 511,418 RAC: 0 |
I am not geting any work. Why is that? Your computer is described as a "Power Macintosh". Does that mean it uses a PPC processor? Due to the decline in the number of PPC computers, the Rosetta team have decided not to support the PPC processor any longer; the number of computers contributing with PPC does not justify the effort of maintaining PPC compatible code. The project team have instead focussed their limited resources on supporting the Intel processors that are used in new Macintosh computers. Some users report picking up a PPC compatible task once every few months, but they are rare and probably getting rarer. |
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Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Rosetta has several active application versions. So it is not entirely true to say PPC is no longer supported. However, it is only supported by specific application versions. And at any given point in time, there may or may not be work available for a version that runs on PPC. So, it would be more correct to say the reason is that no WUs were immediately available for PPC. And that Rosetta only expects to have PPC work available periodically. Rosetta Moderator: Mod.Sense |
googloo Send message Joined: 15 Sep 06 Posts: 133 Credit: 21,693,650 RAC: 5,567 
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Version 1.91 is still not posted to Rosetta Application Version Release Log. |
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AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0 |
I've had a few looprebuild_t374 WUs exit in zero time with the message: ERROR: Option matching -in:detect_disulfides not found in command line top-level context https://boinc.bakerlab.org/rosetta/result.php?resultid=272007811 https://boinc.bakerlab.org/rosetta/result.php?resultid=271996598 https://boinc.bakerlab.org/rosetta/result.php?resultid=271963149 |
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Sid Celery Send message Joined: 11 Feb 08 Posts: 1982 Credit: 38,464,506 RAC: 14,964
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I've had a few looprebuild_t374 WUs exit in zero time with the message: Same here, but just one in the last few days: looprebuild_t374_S_00005_0000006_05.pdb_t374_.set4.loopfile_12864_3785_1
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P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
This one had a interesting problem, did not get much credit either. Looks like it only counted the last two! https://boinc.bakerlab.org/rosetta/workunit.php?wuid=248458028 lr8_A_seq_score12_ss2.5_rlbd_1bk2_IGNORE_THE_REST_DECOY_14618_763_0 ====================================================== DONE :: 72 starting structures 14227.5 cpu seconds This process generated 72 decoys from 72 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish # cpu_run_time_pref: 14400 Fullatom mode .. ====================================================== DONE :: 2 starting structures 14586 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt>
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gazzawazza Send message Joined: 4 May 07 Posts: 28 Credit: 297,648 RAC: 0 |
hi all. Sorry to say this but I'm still getting the odd "...exited with zero status but no 'finished' file" issue: 272737041 272128367 I've no idea whether this is Rosetta related or to do with my BOINC client (6.6.36) but it doesn't appear to happen with any of the other projects I'm crunching. Regards, Gary |
 rochester new york Send message Joined: 2 Jul 06 Posts: 2842 Credit: 2,020,043 RAC: 0 |
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Number crunching :
Minirosetta 1.90 and 1.91
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