Minirosetta 1.82/1.88

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P . P . L .

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Message 62603 - Posted: 29 Jul 2009, 21:48:23 UTC

This one failed, zero time.

mini 1.87.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=243855048

Wed 29 Jul 2009 19:43:07 EST|rosetta@home|Output file looprebuild_t374_decoy_5_12863_2471_0_0 for task absent


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Luciano Bastianello

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Message 62604 - Posted: 29 Jul 2009, 23:22:44 UTC - in response to Message 62603.  
Last modified: 29 Jul 2009, 23:35:10 UTC

Windows Vista Ultimate 64
Kaspersky Internet Security
minirosetta_1.88_windows_x86_64.exe is build without signature.
On my sistem is jailed in "bad applications", execution forbidden.
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AMD_is_logical

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Message 62607 - Posted: 30 Jul 2009, 0:12:45 UTC

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P . P . L .

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Message 62610 - Posted: 30 Jul 2009, 1:38:06 UTC

Another with zero time.

mini 1.88.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245295471

Thu 30 Jul 2009 09:28:36 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1b3a_IGNORE_THE_REST_DECOY_14598_574_0_0 for task absent

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Message 62611 - Posted: 30 Jul 2009, 3:10:27 UTC
Last modified: 30 Jul 2009, 3:22:20 UTC

Another four failed on my quad all with zero time.

What have you done? Is it a bad batch?

mini 1.88.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245330803
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245256796
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245329397
https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245267600


Thu 30 Jul 2009 12:48:16 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1a8o_IGNORE_THE_REST_DECOY_14598_435_1_0 for task absent

Thu 30 Jul 2009 12:48:18 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1o4w_IGNORE_THE_REST_DECOY_14598_752_0_0 for task absent

Thu 30 Jul 2009 12:48:19 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1ugh_IGNORE_THE_REST_DECOY_14598_381_1_0 for task absent

Thu 30 Jul 2009 12:48:21 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1wdv_IGNORE_THE_REST_DECOY_14598_759_0_0 for task absent
================================================================================
Edit // I just found another on my 3ghz rig same error as others.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=245327804

Thu 30 Jul 2009 12:34:51 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1t2i_IGNORE_THE_REST_DECOY_14598_1885_0_0 for task absent

process exited with code 1 (0x1, -255)

ERROR: Option matching -detect_disulf not found in command line top-level context
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ViVac

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Message 62613 - Posted: 30 Jul 2009, 5:36:52 UTC

got two 0 sec error after 1.88

<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-30 13:28:59:] :: BOINC:: Initializing ... ok.
[2009- 7-30 13:28:59:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context

</stderr_txt>
]]>

https://boinc.bakerlab.org/rosetta/result.php?resultid=269086838
https://boinc.bakerlab.org/rosetta/result.php?resultid=269089801
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Message 62623 - Posted: 30 Jul 2009, 10:30:27 UTC - in response to Message 62613.  

got two 0 sec error after 1.88

https://boinc.bakerlab.org/rosetta/result.php?resultid=269086838
https://boinc.bakerlab.org/rosetta/result.php?resultid=269089801



Same here
https://boinc.bakerlab.org/rosetta/result.php?resultid=269063471
https://boinc.bakerlab.org/rosetta/result.php?resultid=269061152
https://boinc.bakerlab.org/rosetta/result.php?resultid=268941898
https://boinc.bakerlab.org/rosetta/result.php?resultid=269012124
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gerlik

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Message 62624 - Posted: 30 Jul 2009, 10:34:57 UTC

most of 1.88 wu failed at start up, only 1 on my pc (linux) is working
I have 1 1.87 wich try to upload but can't.
There is very difficult to download new wu but also same difficult to upload when wu has successfully ended: can't link to server (lot of http error )
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Rabenherz85

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Message 62626 - Posted: 30 Jul 2009, 11:19:33 UTC
Last modified: 30 Jul 2009, 11:20:41 UTC

30.07.2009 13:17:25 rosetta@home Started upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:08 Project communication failed: attempting access to reference site
30.07.2009 13:20:08 rosetta@home Temporarily failed upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0: HTTP error
30.07.2009 13:20:08 rosetta@home Backing off 11 min 28 sec on upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:10 Internet access OK - project servers may be temporarily down.



Tried to upload ths WU for about an hour now without success
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Mack

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Message 62635 - Posted: 30 Jul 2009, 14:43:53 UTC

Thu Jul 30 09:23:59 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 using minirosetta version 188
Thu Jul 30 09:24:00 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 finished
Thu Jul 30 09:24:00 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1_0 for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 absent
Thu Jul 30 09:24:00 2009 rosetta@home Starting lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1
Thu Jul 30 09:24:00 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 using minirosetta version 188
Thu Jul 30 09:24:01 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 finished
Thu Jul 30 09:24:01 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1_0 for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 absent
Thu Jul 30 09:24:01 2009 rosetta@home Starting lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1
Thu Jul 30 09:24:02 2009 rosetta@home Starting task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 using minirosetta version 188
Thu Jul 30 09:36:06 2009 rosetta@home Computation for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 finished
Thu Jul 30 09:36:06 2009 rosetta@home Output file lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1_0 for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 absent
Thu Jul 30 09:36:06 2009 rosetta@home Starting lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1
Thu Jul 30 09:36:06 2009 rosetta@home Starting task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 using minirosetta version 188
Thu Jul 30 09:36:08 2009 rosetta@home Computation for task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 finished
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Luciano Bastianello

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Message 62636 - Posted: 30 Jul 2009, 16:11:28 UTC

All my 3 computers
Windows vista ultimate 64
Windows Server 2008 64
Linux Fedora 9 64
have a lot of errors:
--- begin ---
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
Funzione non corretta. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-30 10:38:12:] :: BOINC:: Initializing ... ok.
[2009- 7-30 10:38:12:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context

</stderr_txt>
]]>
-- end ---

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googloo
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Message 62641 - Posted: 30 Jul 2009, 17:46:16 UTC

What's the point of having a Rosetta Application Version Release Log if you Forum moderator
Project administrator
Project developer
Project scientist
don't post to it?
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Profile BillK

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Message 62644 - Posted: 30 Jul 2009, 18:18:12 UTC

Multiple errors, Can't download tasks PC that processes 1/hr has only gotten 1 in 24 hrs. Slower Mac none.
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Snags

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Message 62646 - Posted: 30 Jul 2009, 19:04:38 UTC

lr8_B_seq_score12_ss5.0_rlbd_1prq_IGNORE_THE_REST_DECOY_14598_814_1

process exited with code 1 (0x1, -255)

ERROR: Option matching -detect_disulf not found in command line top-level context
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Yifan Song
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Message 62648 - Posted: 30 Jul 2009, 19:33:42 UTC

Sorry about these errors.
A lot of the errors (especially the disulfide ones) are due to the jobs submitted a while ago that need the new flags from the latest update. And after the reversion, those jobs are no longer valid.
Our file server is a bit hammered right now, so it's hard to change those job status as well.
We have found the bug that causes the slowing down of the code though, and we have tested the bug fix on our alpha server. Thus we are updating the program.
Massive network traffic is still expected due to the version update. Hopefully everything will be stabilized in a few days.
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P . P . L .

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Message 62662 - Posted: 30 Jul 2009, 22:06:28 UTC

Here's another one that failed with zero time, hasn't been returned yet.

mini 1.88.

Fri 31 Jul 2009 07:34:09 EST|rosetta@home|Output file lr13_seq_score12_F_rlbd_1gu3_IGNORE_THE_REST_DECOY_14592_1803_1_0 for task absent

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Profile Greg_BE
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Message 62689 - Posted: 31 Jul 2009, 21:14:40 UTC
Last modified: 31 Jul 2009, 21:17:28 UTC

lr8_B_seq_score12_ss5.0_rlbd_1tig_IGNORE_THE_REST_DECOY_14598_1960_0
lr13_seq_score12_F_rlbd_1urn_IGNORE_THE_REST_DECOY_14592_1938_1
lr8_B_seq_score12_ss5.0_rlbd_2hsb_IGNORE_THE_REST_DECOY_14598_1939_1
lr13_seq_score12_F_rlbd_1a68_IGNORE_THE_REST_DECOY_14592_1904_0
lr8_B_seq_score12_ss5.0_rlbd_1fkb_IGNORE_THE_REST_DECOY_14598_1881_0
lr8_B_seq_score12_ss5.0_rlbd_1o73_IGNORE_THE_REST_DECOY_14598_598_0
lr8_B_seq_score12_ss5.0_rlbd_1ubi_IGNORE_THE_REST_DECOY_14598_1762_1


<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-31 22:54:18:] :: BOINC:: Initializing ... ok.
[2009- 7-31 22:54:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context


If these jobs are not valid, then where was the command from RAH to have the system delete them?

How do you tell which ones were invalid and can be aborted and which ones will run ok?

I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece.
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Path7

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Message 62690 - Posted: 31 Jul 2009, 22:11:03 UTC - in response to Message 62689.  


If these jobs are not valid, then where was the command from RAH to have the system delete them?

How do you tell which ones were invalid and can be aborted and which ones will run ok?

I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece.

Hello Greg,
The error reports above are all about: lrX_XX_seq_score_...... Wu's.
The lrX_XX_mmbend_rlbd_ ..... Wu's are not mentioned in the error reports above.

Be aware: it is sometimes difficult to download new Wu's.

Good luck,
Path7.

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Profile Greg_BE
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Message 62696 - Posted: 1 Aug 2009, 11:53:22 UTC
Last modified: 1 Aug 2009, 11:55:09 UTC

Here are some more with the same error.
That's 7 from the last time and 3 more for a total of 10 tasks that crashed with 0 time. I think these are part of that batch of disulf tasks that had a code problem.

lr13_seq_score12_F_rlbd_1lis_IGNORE_THE_REST_DECOY_14592_2547_0
lr13_seq_score12_F_rlbd_1kpe_IGNORE_THE_REST_DECOY_14592_2547_0
lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2547_0



<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 8- 1 5: 2:53:] :: BOINC:: Initializing ... ok.
[2009- 8- 1 5: 2:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context
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Message boards : Number crunching : Minirosetta 1.82/1.88



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