computation errors and wrong files sizes

Questions and Answers : Windows : computation errors and wrong files sizes

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gazzawazza

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Message 61872 - Posted: 21 Jun 2009, 9:23:55 UTC

this one failed too:

"21/06/2009 06:01:38 rosetta@home Computation for task proteinG_BOINC_ABRELAX_CONTROL_SAVE_ALL_OUT_IGNORE_THE_REST-S25-9-S3-3--proteinG-_12936_8593_0 finished
21/06/2009 06:01:38 rosetta@home Output file proteinG_BOINC_ABRELAX_CONTROL_SAVE_ALL_OUT_IGNORE_THE_REST-S25-9-S3-3--proteinG-_12936_8593_0_0 for task proteinG_BOINC_ABRELAX_CONTROL_SAVE_ALL_OUT_IGNORE_THE_REST-S25-9-S3-3--proteinG-_12936_8593_0 absent"
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gazzawazza

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Message 61981 - Posted: 28 Jun 2009, 8:21:11 UTC

How ironic! I was just going to advise that everything seems to be running smoothly with Rosetta 1.80 (no errors in the last 7 days) and then today... the same old problem re-occurred:

"28/06/2009 08:27:08 rosetta@home Restarting task real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0 using minirosetta version 180
28/06/2009 08:27:49 rosetta@home Task real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0 exited with zero status but no 'finished' file
28/06/2009 08:27:49 rosetta@home If this happens repeatedly you may need to reset the project.
28/06/2009 08:27:50 rosetta@home Restarting task real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0 using minirosetta version 180
28/06/2009 08:28:31 rosetta@home Computation for task real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0 finished
28/06/2009 08:28:31 rosetta@home Output file real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0_0 for task real_core_1.5_low200_beta_low200_start_hb_t370__IGNORE_THE_REST_13038_399_0 absent"

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gazzawazza

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Message 63660 - Posted: 13 Oct 2009, 12:27:27 UTC

Damn... have had a spate of computation errors again.

Out of the last 20 WUs, 8 have failed.

All seem to be "can't aquire lockfile - exiting" errors.

I've using Rosetta 1.97 and BOINC 6.6.38 on Vista Home Premium 32bit.

Also, all these lockfile failures have occurred without any A/V on my system (although I have since installed Kaspersky antivirus 2010).

Finally, I'm running BOINC in protected mode (as a service), cos if I don't I can't seem to exit from BOINC cleanly from the systray manager.

I hope someone can assist, as I don't get lockfile issues with my other projects and it seems like a waste of time to be crunching units, only to get a 40% failure rate at the end of it.


Thanks in advance,

Gary
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intrigueme

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Message 63706 - Posted: 16 Oct 2009, 1:22:16 UTC

well I'm also having problems on my xp machine. no probs on my vista machine. here's a link to my detailed stats:
http://boincstats.com/stats/user_graph.php?pr=rosetta&id=192
I haven't had a good wu off the host flunky in quite some time.

anybody got ideas?
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Mod.Sense
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Message 63720 - Posted: 16 Oct 2009, 21:22:52 UTC

A link to the host having problems.

Given the way it is failing on all work units, and at various times in the run, and the "wingman" is able to complete the same task without incident would all seem to point to some, heat, memory or overclocking problems on your machine. Have you checked for dust bunnies in side the case? Have you tried memory stress test tools? Are you overclocking the machine?
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intrigueme

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Message 63733 - Posted: 18 Oct 2009, 5:18:06 UTC - in response to Message 63720.  

A link to the host having problems.

Given the way it is failing on all work units, and at various times in the run, and the "wingman" is able to complete the same task without incident would all seem to point to some, heat, memory or overclocking problems on your machine. Have you checked for dust bunnies in side the case? Have you tried memory stress test tools? Are you overclocking the machine?


No I assure u none of those things r the problem. here's a log:
10/16/2009 10:48:53 PM Starting BOINC client version 6.6.38 for windows_intelx86
10/16/2009 10:48:53 PM log flags: task, file_xfer, sched_ops
10/16/2009 10:48:53 PM Libraries: libcurl/7.19.4 OpenSSL/0.9.8k zlib/1.2.3
10/16/2009 10:48:53 PM Data directory: C:Documents and SettingsAll Users.WINDOWSApplication DataBOINC
10/16/2009 10:48:53 PM Running under account Jeff Allen
10/16/2009 10:48:53 PM Processor: 1 GenuineIntel Intel(R) Pentium(R) 4 CPU 2.53GHz [x86 Family 15 Model 2 Stepping 7]
10/16/2009 10:48:53 PM Processor features: fpu tsc sse sse2 mmx
10/16/2009 10:48:53 PM OS: Microsoft Windows XP: Home x86 Edition, Service Pack 3, (05.01.2600.00)
10/16/2009 10:48:53 PM Memory: 1022.42 MB physical, 2.90 GB virtual
10/16/2009 10:48:53 PM Disk: 55.89 GB total, 5.83 GB free
10/16/2009 10:48:53 PM Local time is UTC -4 hours
10/16/2009 10:48:55 PM No CUDA-capable NVIDIA GPUs found
10/16/2009 10:48:55 PM No coprocessors
10/16/2009 10:48:56 PM Not using a proxy
10/16/2009 10:48:56 PM rosetta@home URL: https://boinc.bakerlab.org/rosetta/; Computer ID: 298209; location: home; project prefs: default
10/16/2009 10:48:56 PM rosetta@home General prefs: from rosetta@home (last modified 10-Apr-2007 10:20:36)
10/16/2009 10:48:56 PM rosetta@home Computer location: home
10/16/2009 10:48:56 PM rosetta@home General prefs: no separate prefs for home; using your defaults
10/16/2009 10:48:56 PM Preferences limit memory usage when active to 511.21MB
10/16/2009 10:48:56 PM Preferences limit memory usage when idle to 920.18MB
10/16/2009 10:49:01 PM Preferences limit disk usage to 6.07GB
10/16/2009 10:49:26 PM rosetta@home Restarting task lr5_dun08_it01_A_rlbd_2fls_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_143_0 using minirosetta version 198
10/16/2009 11:09:15 PM rosetta@home Computation for task lr5_dun08_it01_A_rlbd_2fls_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_143_0 finished
10/16/2009 11:09:15 PM rosetta@home Output file lr5_dun08_it01_A_rlbd_2fls_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_143_0_0 for task lr5_dun08_it01_A_rlbd_2fls_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_143_0 absent
10/16/2009 11:09:15 PM rosetta@home Starting symm_lr8_seq_score12_A_rlbd_2iiy_IGNORE_THE_REST_DECOY_14880_2881_1
10/16/2009 11:09:19 PM rosetta@home Starting task symm_lr8_seq_score12_A_rlbd_2iiy_IGNORE_THE_REST_DECOY_14880_2881_1 using minirosetta version 198
10/16/2009 11:10:19 PM rosetta@home Sending scheduler request: To fetch work.
10/16/2009 11:10:19 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/16/2009 11:10:24 PM rosetta@home Scheduler request completed: got 1 new tasks
10/16/2009 11:10:26 PM rosetta@home Started download of relax_options_lr13_seq_score12_F_mtyka
10/16/2009 11:10:26 PM rosetta@home Started download of boinc_rb1_1wit.pdb
10/16/2009 11:10:28 PM rosetta@home Finished download of relax_options_lr13_seq_score12_F_mtyka
10/16/2009 11:10:28 PM rosetta@home Started download of lr13_1wit.out.zip
10/16/2009 11:10:33 PM rosetta@home Finished download of boinc_rb1_1wit.pdb
10/16/2009 11:10:33 PM rosetta@home Started download of mtyka_lr13_seq_score12_F.zip
10/16/2009 11:10:34 PM rosetta@home Finished download of mtyka_lr13_seq_score12_F.zip
10/16/2009 11:14:59 PM rosetta@home Finished download of lr13_1wit.out.zip
10/16/2009 11:26:16 PM rosetta@home Computation for task symm_lr8_seq_score12_A_rlbd_2iiy_IGNORE_THE_REST_DECOY_14880_2881_1 finished
10/16/2009 11:26:16 PM rosetta@home Output file symm_lr8_seq_score12_A_rlbd_2iiy_IGNORE_THE_REST_DECOY_14880_2881_1_0 for task symm_lr8_seq_score12_A_rlbd_2iiy_IGNORE_THE_REST_DECOY_14880_2881_1 absent
10/16/2009 11:26:16 PM rosetta@home Starting lr5_dun08_it01_A_rlbd_2ci2_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_160_0
10/16/2009 11:26:20 PM rosetta@home Starting task lr5_dun08_it01_A_rlbd_2ci2_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_160_0 using minirosetta version 198
10/16/2009 11:27:16 PM rosetta@home Sending scheduler request: To fetch work.
10/16/2009 11:27:16 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/16/2009 11:27:21 PM rosetta@home Scheduler request completed: got 1 new tasks
10/16/2009 11:27:23 PM rosetta@home Started download of boinc_rb1_1o73.pdb
10/16/2009 11:27:23 PM rosetta@home Started download of lr5_1o73.out.zip
10/16/2009 11:27:32 PM rosetta@home Finished download of boinc_rb1_1o73.pdb
10/16/2009 11:29:19 PM rosetta@home Finished download of lr5_1o73.out.zip
10/16/2009 11:56:20 PM rosetta@home Computation for task lr5_dun08_it01_A_rlbd_2ci2_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_160_0 finished
10/16/2009 11:56:20 PM rosetta@home Output file lr5_dun08_it01_A_rlbd_2ci2_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_160_0_0 for task lr5_dun08_it01_A_rlbd_2ci2_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_160_0 absent
10/16/2009 11:56:20 PM rosetta@home Starting mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0
10/16/2009 11:56:21 PM rosetta@home Starting task mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0 using minirosetta version 198
10/16/2009 11:57:00 PM rosetta@home Task mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0 exited with zero status but no 'finished' file
10/16/2009 11:57:00 PM rosetta@home If this happens repeatedly you may need to reset the project.
10/16/2009 11:57:00 PM rosetta@home Restarting task mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0 using minirosetta version 198
10/16/2009 11:57:23 PM rosetta@home Sending scheduler request: To fetch work.
10/16/2009 11:57:23 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/16/2009 11:57:28 PM rosetta@home Scheduler request completed: got 1 new tasks
10/16/2009 11:57:31 PM rosetta@home Started download of boinc_rb1_1c9o.pdb
10/16/2009 11:57:31 PM rosetta@home Started download of lr5_1c9o.out.zip
10/16/2009 11:57:37 PM rosetta@home Finished download of boinc_rb1_1c9o.pdb
10/16/2009 11:58:26 PM rosetta@home Finished download of lr5_1c9o.out.zip
10/17/2009 12:16:09 AM Contacting account manager at http://bam.boincstats.com/
10/17/2009 12:16:11 AM Account manager: BAM! User-ID: 703
10/17/2009 12:16:11 AM Account manager: BAM! Host-ID: 153271
10/17/2009 12:16:11 AM Account manager: This host connected 98 times to BAM!
10/17/2009 12:16:11 AM Account manager contact succeeded
10/17/2009 2:05:13 AM rosetta@home Computation for task mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0 finished
10/17/2009 2:05:13 AM rosetta@home Output file mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0_0 for task mega_lr13_seq_score12_F_rlbd_1wit_IGNORE_THE_REST_DECOY_15196_391_0 absent
10/17/2009 2:05:13 AM rosetta@home Starting lr5_dun08_it01_A_rlbd_1o73_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_353_0
10/17/2009 2:05:18 AM rosetta@home Starting task lr5_dun08_it01_A_rlbd_1o73_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_353_0 using minirosetta version 198
10/17/2009 2:06:13 AM rosetta@home Sending scheduler request: To fetch work.
10/17/2009 2:06:13 AM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/17/2009 2:06:18 AM rosetta@home Scheduler request completed: got 1 new tasks
10/17/2009 2:06:20 AM rosetta@home Started download of relax_options_lr5_seq_score12_mtyka
10/17/2009 2:06:20 AM rosetta@home Started download of boinc_rb1_2vik.pdb
10/17/2009 2:06:21 AM rosetta@home Finished download of relax_options_lr5_seq_score12_mtyka
10/17/2009 2:06:21 AM rosetta@home Started download of lr5_2vik.out.zip
10/17/2009 2:06:30 AM rosetta@home Finished download of boinc_rb1_2vik.pdb
10/17/2009 2:06:30 AM rosetta@home Started download of mtyka_lr5_seq_score12.zip
10/17/2009 2:06:32 AM rosetta@home Finished download of mtyka_lr5_seq_score12.zip
10/17/2009 2:08:16 AM rosetta@home Finished download of lr5_2vik.out.zip
10/17/2009 2:30:44 AM rosetta@home Computation for task lr5_dun08_it01_A_rlbd_1o73_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_353_0 finished
10/17/2009 2:30:44 AM rosetta@home Output file lr5_dun08_it01_A_rlbd_1o73_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_353_0_0 for task lr5_dun08_it01_A_rlbd_1o73_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_353_0 absent
10/17/2009 2:30:44 AM rosetta@home Starting lr5_dun08_it01_A_rlbd_1c9o_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_417_0
10/17/2009 2:30:44 AM rosetta@home Starting task lr5_dun08_it01_A_rlbd_1c9o_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_417_0 using minirosetta version 198
10/17/2009 2:31:45 AM rosetta@home Sending scheduler request: To fetch work.
10/17/2009 2:31:45 AM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/17/2009 2:31:50 AM rosetta@home Scheduler request completed: got 1 new tasks
10/17/2009 2:31:52 AM rosetta@home Started download of relax_options_lr8_seq_score12_mtyka
10/17/2009 2:31:52 AM rosetta@home Started download of boinc_rb1_1vls.pdb
10/17/2009 2:31:54 AM rosetta@home Finished download of relax_options_lr8_seq_score12_mtyka
10/17/2009 2:31:54 AM rosetta@home Started download of lr8_1vls.out.zip
10/17/2009 2:32:01 AM rosetta@home Finished download of boinc_rb1_1vls.pdb
10/17/2009 2:32:01 AM rosetta@home Started download of mtyka_lr8_seq_score12.zip
10/17/2009 2:32:02 AM rosetta@home Finished download of mtyka_lr8_seq_score12.zip
10/17/2009 2:35:08 AM rosetta@home Finished download of lr8_1vls.out.zip
10/17/2009 3:03:59 AM rosetta@home Computation for task lr5_dun08_it01_A_rlbd_1c9o_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_417_0 finished
10/17/2009 3:03:59 AM rosetta@home Output file lr5_dun08_it01_A_rlbd_1c9o_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_417_0_0 for task lr5_dun08_it01_A_rlbd_1c9o_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_417_0 absent
10/17/2009 3:03:59 AM rosetta@home Starting mega_lr5_seq_score12_rlbd_2vik_IGNORE_THE_REST_DECOY_15199_578_0
10/17/2009 3:04:01 AM rosetta@home Starting task mega_lr5_seq_score12_rlbd_2vik_IGNORE_THE_REST_DECOY_15199_578_0 using minirosetta version 198
10/17/2009 3:05:03 AM rosetta@home Sending scheduler request: To fetch work.
10/17/2009 3:05:03 AM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/17/2009 3:05:08 AM rosetta@home Scheduler request completed: got 1 new tasks
10/17/2009 3:05:10 AM rosetta@home Started download of boinc_rb1_1utg.pdb
10/17/2009 3:05:10 AM rosetta@home Started download of lr5_1utg.out.zip
10/17/2009 3:05:19 AM rosetta@home Finished download of boinc_rb1_1utg.pdb
10/17/2009 3:06:00 AM rosetta@home Finished download of lr5_1utg.out.zip
10/17/2009 3:08:00 AM rosetta@home Computation for task mega_lr5_seq_score12_rlbd_2vik_IGNORE_THE_REST_DECOY_15199_578_0 finished
10/17/2009 3:08:00 AM rosetta@home Output file mega_lr5_seq_score12_rlbd_2vik_IGNORE_THE_REST_DECOY_15199_578_0_0 for task mega_lr5_seq_score12_rlbd_2vik_IGNORE_THE_REST_DECOY_15199_578_0 absent
10/17/2009 3:08:00 AM rosetta@home Starting mega_lr8_seq_score12_rlbd_1vls_IGNORE_THE_REST_DECOY_15198_656_0
10/17/2009 3:08:00 AM rosetta@home Starting task mega_lr8_seq_score12_rlbd_1vls_IGNORE_THE_REST_DECOY_15198_656_0 using minirosetta version 198
10/17/2009 3:09:14 AM rosetta@home Sending scheduler request: To fetch work.
10/17/2009 3:09:14 AM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/17/2009 3:09:19 AM rosetta@home Scheduler request completed: got 1 new tasks
10/17/2009 3:09:22 AM rosetta@home Started download of boinc_rb1_2hbo.pdb
10/17/2009 3:09:22 AM rosetta@home Started download of lr8_2hbo.out.zip
10/17/2009 3:09:27 AM rosetta@home Finished download of boinc_rb1_2hbo.pdb
10/17/2009 3:09:47 AM rosetta@home Finished download of lr8_2hbo.out.zip
10/17/2009 4:00:45 AM rosetta@home Computation for task mega_lr8_seq_score12_rlbd_1vls_IGNORE_THE_REST_DECOY_15198_656_0 finished
10/17/2009 4:00:45 AM rosetta@home Output file mega_lr8_seq_score12_rlbd_1vls_IGNORE_THE_REST_DECOY_15198_656_0_0 for task mega_lr8_seq_score12_rlbd_1vls_IGNORE_THE_REST_DECOY_15198_656_0 absent
10/17/2009 4:00:45 AM rosetta@home Starting lr5_dun08_it01_A_rlbd_1utg_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_478_1
10/17/2009 4:00:47 AM rosetta@home Starting task lr5_dun08_it01_A_rlbd_1utg_SAVE_ALL_OUT_IGNORE_THE_REST_DECOY_15193_478_1 using minirosetta version 198
10/17/2009 4:01:48 AM rosetta@home Sending scheduler request: To fetch work.
10/17/2009 4:01:48 AM rosetta@home Reporting 1 completed tasks, requesting new tasks
10/17/2009 4:01:54 AM rosetta@home Scheduler request completed: got 1 new tasks
10/17/2009 4:01:56 AM rosetta@home Started download of aafrags200.txt
10/17/2009 4:01:56 AM rosetta@home Started download of r115Adescription.txt
10/17/2009 4:01:58 AM rosetta@home Finished download of aafrags200.txt
10/17/2009 4:01:58 AM rosetta@home Finished download of r115Adescription.txt
10/17/2009 4:01:58 AM rosetta@home Started download of r115A.fasta
10/17/2009 4:01:58 AM rosetta@home Started download of r115.pdb.gz
10/17/2009 4:01:59 AM rosetta@home Finished download of r115A.fasta
10/17/2009 4:01:59 AM rosetta@home Started download of r115A.psipred_ss2
10/17/2009 4:02:00 AM rosetta@home Finished download of r115.pdb.gz
10/17/2009 4:02:00 AM rosetta@home Finished download of r115A.psipred_ss2
10/17/2009 4:02:00 AM rosetta@home Started download of aar115A03_05.200_v1_3.gz
10/17/2009 4:02:00 AM rosetta@home Started download of aar115A09_05.200_v1_3.gz
10/17/2009 4:03:07 AM rosetta@home Finished download of aar115A03_05.200_v1_3.gz
10/17/2009 4:03:53 AM rosetta@home Finished download of aar115A09_05.200_v1_3.gz
10/18/2009 12:16:45 AM Contacting account manager at http://bam.boincstats.com/
10/18/2009 12:17:54 AM Account manager: BAM! User-ID: 703
10/18/2009 12:17:54 AM Account manager: BAM! Host-ID: 153271
10/18/2009 12:17:54 AM Account manager: This host connected 99 times to BAM!
10/18/2009 12:17:54 AM Account manager contact succeeded

I will try uninstalling and re-installing. I don't know I'm at my wits end here!!! I run rosetta on a total of 3 machines this is the only one having problems.
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intrigueme

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Message 63862 - Posted: 27 Oct 2009, 22:47:51 UTC

Sry Mod.Sense u were right. I ran prime95 and it was bad ram. I have 2 sticks of 512 so I ran it with both in. It failed after 2hrs 46min. I pulled one stick out and it failed in the first 11 minutes. Then I took that stick out and ran rosetta. I got home from work and one unit finished and is ready to report. Sounds like the problem is fixed. Thanks now all 3 of my host can crunch. sry I doubted you!!!
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Questions and Answers : Windows : computation errors and wrong files sizes



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