minirosetta v1.25 bug thread

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Profile David Emigh
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Message 53524 - Posted: 2 Jun 2008, 21:51:38 UTC

Here's a crash at 53000+ seconds:

Maximum disk usage exceeded

- Unhandled Exception Record -
Reason: Breakpoint Encountered (0x80000003) at address 0x77100004

Engaging BOINC Windows Runtime Debugger...


A large and detailed debugger message follows the above, available at the link.

My success rate with mini 1.25 stands at 11/14 at this time.
Rosie, Rosie, she's our gal,
If she can't do it, no one shall!
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Alberthuang

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Message 53530 - Posted: 4 Jun 2008, 3:11:07 UTC
Last modified: 4 Jun 2008, 3:29:14 UTC

My computer's OS is Windows XP SP3, using the BOINC manager version 5.10.45.
It computed the workunit t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3537_77 using minirosetta version 1.25 yesterday, but BOINC showed compute error when it proceeded this workunit about 24%. Then a windows message showed that Windows C++ Runtime error at the same time. The task detail is in the following:

Task ID 166396711
Name: t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3537_77_1
Workunit: 151552369
Created: 25 May 2008 12:00:00 UTC
Sent: 25 May 2008 12:00:11 UTC
Received: 4 Jun 2008 2:02:16 UTC
Server state: Over
Outcome Client: error
Client state: Done
Exit status: 3 (0x3)
Computer ID: 224205
Report deadline: 4 Jun 2008 12:00:11 UTC
CPU time: 3447.287
stderr out: <core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
系統找不到指定的路徑。 (0x3) - exit code 3 (0x3)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
9 10000
3 9
1 3
# cpu_run_time_pref: 14400
WARNING: Override of option -out:nstruct sets a different value
9 10000
3 9
1 3
# cpu_run_time_pref: 14400

</stderr_txt>
]]>


Validate state: Invalid
Claimed credit: 6.60572077983072
Granted credit: 0
application version: 1.25

The other one computer previously computed the same workunit with minirosetta version 1.24, and the task is validated error. The detail is in the following:

Task ID 165839505
Name: t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3537_77_0
Workunit: 151552369
Created: 23 May 2008 12:50:53 UTC
Sent: 23 May 2008 12:58:31 UTC
Received: 25 May 2008 11:59:49 UTC
Server: state Over
Outcome: Validate error
Client: state Done
Exit status: 0 (0x0)
Computer ID: 809141
Report deadline: 2 Jun 2008 12:58:31 UTC
CPU time: 6258.251
stderr out: <core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs � at seqpos 1
======================================================
DONE :: 1 starting structures 6257.53 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>


Validate state: Invalid
Claimed credit: 14.7602353670868
Granted credit: 0
application version: 1.24

So both the computers granted no credits for this task!


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Profile (_KoDAk_)

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Message 53582 - Posted: 7 Jun 2008, 19:40:27 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=169062846
https://boinc.bakerlab.org/rosetta/result.php?resultid=169173808
https://boinc.bakerlab.org/rosetta/result.php?resultid=169173809

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Loki

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Message 53674 - Posted: 13 Jun 2008, 17:39:48 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=169646740

</stderr_txt>
<message>
<file_xfer_error>
<file_name>hom01_BOINC_CASP8_ABRELAX_t409_IGNORE_THE_REST-S25-7-S3-7--hom01-_3649_1045_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>
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UPluto
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Message 53679 - Posted: 14 Jun 2008, 3:28:09 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=170391590
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
======================================================
DONE :: 1 starting structures 6245.89 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>rb_06_10_11677_20766_T0443_IGNORE_THE_REST_10_17_3735_19_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Thai BOINC Group
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Profile Greg_BE
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Message 53716 - Posted: 16 Jun 2008, 16:51:42 UTC
Last modified: 16 Jun 2008, 16:55:13 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=170392289
rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0
crashed after 3hrs with a compute error and this message shows up in Boinc mgr
6/16/2008 5:42:54 PM|rosetta@home|Output file rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0_0 for task rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0 absent

it started normally:
6/16/2008 2:36:01 PM|rosetta@home|Starting rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0
6/16/2008 2:36:01 PM|rosetta@home|Starting task rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0 using minirosetta version 125

Here is the report from the webpage.
standard stderr message and then this: <message>
<file_xfer_error>
<file_name>rb_06_10_11677_20766_T0443_IGNORE_THE_REST_03_10_3735_3_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>

according to a website windows error 161 is a bad path name error.

if you look this tasks up at https://boinc.bakerlab.org/rosetta/workunit.php?wuid=155546338 it says in the errors line canceled
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Profile Greg_BE
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Message 53719 - Posted: 16 Jun 2008, 18:21:02 UTC

yet another one...come on...your killing me
https://boinc.bakerlab.org/rosetta/result.php?resultid=170392327

same problem as the one below...missing file path
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Profile Greg_BE
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Message 53720 - Posted: 16 Jun 2008, 18:24:20 UTC
Last modified: 16 Jun 2008, 18:27:27 UTC

and the latest https://boinc.bakerlab.org/rosetta/result.php?resultid=170401875
crashed on another computer in the downloading phase and crashed on mine on validation.
the output contains about 3 pages of the words 'error writing'

more wasted cpu time
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Profile Greg_BE
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Message 53736 - Posted: 17 Jun 2008, 5:26:37 UTC
Last modified: 17 Jun 2008, 5:28:05 UTC

https://boinc.bakerlab.org/rosetta/result.php?resultid=170392307
full run and then compute error
</stderr_txt>
<message>
<file_xfer_error>
<file_name>rb_06_10_11677_20766_T0443_IGNORE_THE_REST_08_16_3735_29_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

https://boinc.bakerlab.org/rosetta/result.php?resultid=170392308
validate error with pages and pages of 'writing'
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Profile Greg_BE
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Message 53778 - Posted: 18 Jun 2008, 17:36:43 UTC

whatever rb06 work i had left, i aborted.
50% error rate or more with this stuff.
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Message boards : Number crunching : minirosetta v1.25 bug thread



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