Message boards : Number crunching : Problems with version 5.90/5.91
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Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
This one just errored out: 128154725 Tim, great job on the Rosetta game scores! Just so you understand, the task had ended abnormally already. This is the reason Rosetta wanted direct access to the internet and ZoneAlarm caught it. The program is trying to report the symbol tables at the time of the failure. So, it was the failure that caused the internet access; and not the other way around. Rosetta Moderator: Mod.Sense |
Thomas Leibold Send message Joined: 30 Jul 06 Posts: 55 Credit: 19,627,164 RAC: 0 |
There seems to be a problem with the 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2470 jobs. So far, the watchdog has killed 6 out of 7 jobs. I'm getting watchdog errors for 1zpy_... workunits using 5.91 on Linux as well. As can be seen from the stderr.txt below the old issues with the Rosetta watchdog segfaulting on Linux are still present in 5.91. This workunit was processed on dual AMD Quad-Core Opteron 2346HE running OpenSuSE 10.3 in 64-bit mode. Boinc client is 5.10.21 (also the 64-bit version). <core_client_version>5.10.21</core_client_version> <![CDATA[ <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 28800 # random seed: 3497252 ********************************************************************** Rosetta score is stuck or going too long. Watchdog is ending the run! Stuck at score -10.2275 for 900 seconds ********************************************************************** GZIP SILENT FILE: ./xx1zpy.out SIGSEGV: segmentation violation Stack trace (19 frames): [0x8d9f877] [0x8d9a66c] [0xffffe500] [0x8a8a0eb] [0x8d089ac] [0x8c0f2fa] [0x8c1166f] [0x804c7c2] [0x8a824f1] [0x8a83ebb] [0x8935b66] [0x89378a1] [0x893b1af] [0x898a502] [0x85e96ae] [0x87289aa] [0x8728aca] [0x8e03bc4] [0x8048111] Exiting... </stderr_txt> ]]> Team Helix |
sslickerson Send message Joined: 14 Oct 05 Posts: 101 Credit: 578,497 RAC: 0 |
This one just errored out: 128154725 Got it. Thanks! I'll be back in the game soon, I'm totally addicted! |
BitSpit Send message Joined: 5 Nov 05 Posts: 33 Credit: 4,147,344 RAC: 0 |
Okay, 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2470 problems are NOT limited to Linux. I just had one on a Windows machine get killed by the watchdog: https://boinc.bakerlab.org/rosetta/result.php?resultid=128341472 |
Leonzio Send message Joined: 19 Nov 07 Posts: 8 Credit: 2,731 RAC: 0 |
Linux client (5.10.8). https://boinc.bakerlab.org/rosetta/result.php?resultid=128149800: Task ID 128149800 Name 1qx8__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1qx8_-crystal_foldanddock__2468_1693_0 Workunit 116516582 Created 21 Dec 2007 1:19:05 UTC Sent 21 Dec 2007 1:21:43 UTC Received 22 Dec 2007 17:05:34 UTC Server state Over Outcome Client error Client state Aborted by user Exit status -197 (0xffffff3b) Computer ID 676702 Report deadline 31 Dec 2007 1:21:43 UTC CPU time 5381.028 stderr out <core_client_version>5.10.8</core_client_version> <![CDATA[ <message> aborted by user </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3679098 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 </stderr_txt> ]]> Validate state Invalid Claimed credit 10.9518809022522 Granted credit 0 application version 5.90 https://boinc.bakerlab.org/rosetta/result.php?resultid=128149799: Task ID 128149799 Name 1mz9__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1mz9_-crystal_foldanddock__2468_1693_0 Workunit 116516581 Created 21 Dec 2007 1:19:00 UTC Sent 21 Dec 2007 1:21:43 UTC Received 22 Dec 2007 16:47:26 UTC Server state Over Outcome Client error Client state Aborted by user Exit status -197 (0xffffff3b) Computer ID 676702 Report deadline 31 Dec 2007 1:21:43 UTC CPU time 19274.27 stderr out <core_client_version>5.10.8</core_client_version> <![CDATA[ <message> aborted by user </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3684098 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3684098 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3684098 Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3684098 WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... SIGSEGV: segmentation violation Stack trace (26 frames): [0x8d9fccb] [0x8d9a66c] [0xffffe500] [0x8811e4b] [0x8508656] [0x8c0f7cc] [0x804c78c] [0x86180eb] [0x876c04e] [0x876c3d6] [0x8770393] [0x8781747] [0x87857f4] [0x861cfa1] [0x87869a9] [0x804e30e] [0x8cf5936] [0x89a6761] [0x8939c96] [0x893b3f1] [0x898a502] [0x85e96ae] [0x87289aa] [0x8728aca] [0x8e04704] [0x8048111] Exiting... Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 3684098 WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... WARNING! Not sure non-ideal rotamers are compatible with symmetry yet... </stderr_txt> ]]> Validate state Invalid Claimed credit 39.2284726111539 Granted credit 0 application version 5.90 But https://boinc.bakerlab.org/rosetta/result.php?resultid=128517422: Task ID 128517422 Name 1tif__BOINC_ABINITIO_VF-S25-9-S3-3--1tif_-vf__2450_9783_0 Workunit 116854959 Created 22 Dec 2007 17:30:01 UTC Sent 22 Dec 2007 17:31:08 UTC Received 23 Dec 2007 13:40:53 UTC Server state Over Outcome Success Client state Done Exit status 0 (0x0) Computer ID 676702 Report deadline 1 Jan 2008 17:31:08 UTC CPU time 10562.276101 stderr out <core_client_version>5.10.8</core_client_version> <![CDATA[ <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 1484898 ====================================================== DONE :: 1 starting structures 10561.3 cpu seconds This process generated 31 decoys from 31 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> ]]> Validate state Valid Claimed credit 21.4971544312456 Granted credit 20.0868561778462 application version 5.91 |
BitSpit Send message Joined: 5 Nov 05 Posts: 33 Credit: 4,147,344 RAC: 0 |
Two more jobs that got stuck and were killed by the watchdog: 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_287 1zpy__BOINC_TWIST_RINGS_MORE_SLIDESYMM_FOLD_AND_DOCK-1zpy_-native__2476_200 Every job that I've had killed like that has been a 1zpy with TWIST_RINGS. The combination of the two is causing a problem. |
Joachim Send message Joined: 26 Nov 06 Posts: 5 Credit: 518,439 RAC: 675 |
I've got an error-message, which says my computer has not enough memory. On the website ist nothing to find about requirements for the amount of memory the computer must have. I thing 758 MB must be enough memory. 2007-12-24 11:42:09 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 11:42:09 [rosetta@home] Requesting 5435 seconds of new work 2007-12-24 11:42:14 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 11:42:14 [rosetta@home] Message from server: No work sent 2007-12-24 11:42:14 [rosetta@home] Message from server: Your computer has 758 MB of memory, and 763 MB is needed 2007-12-24 11:42:14 [rosetta@home] Deferring communication for 1 hr 2 min 1 sec 2007-12-24 11:42:14 [rosetta@home] Reason: no work from project 2007-12-24 12:44:20 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 12:44:20 [rosetta@home] Requesting 5783 seconds of new work 2007-12-24 12:44:25 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 12:44:25 [rosetta@home] Message from server: No work sent 2007-12-24 12:44:25 [rosetta@home] Message from server: Your computer has 758 MB of memory, and 763 MB is needed 2007-12-24 12:44:25 [rosetta@home] Deferring communication for 1 min 0 sec 2007-12-24 12:44:25 [rosetta@home] Reason: no work from project 2007-12-24 12:45:28 [rosetta@home] Fetching scheduler list 2007-12-24 12:45:33 [rosetta@home] Master file download succeeded 2007-12-24 12:45:38 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 12:45:38 [rosetta@home] Requesting 5791 seconds of new work 2007-12-24 12:45:43 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 12:45:43 [rosetta@home] Message from server: Not sending work - last request too recent: 78 sec 2007-12-24 12:45:43 [rosetta@home] Deferring communication for 1 min 0 sec 2007-12-24 12:45:43 [rosetta@home] Reason: no work from project 2007-12-24 12:46:45 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 12:46:45 [rosetta@home] Requesting 5797 seconds of new work 2007-12-24 12:46:50 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 12:46:50 [rosetta@home] Message from server: Not sending work - last request too recent: 67 sec 2007-12-24 12:46:50 [rosetta@home] Deferring communication for 1 min 0 sec 2007-12-24 12:46:50 [rosetta@home] Reason: no work from project 2007-12-24 12:47:55 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 12:47:55 [rosetta@home] Requesting 5801 seconds of new work 2007-12-24 12:48:00 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 12:48:00 [rosetta@home] Message from server: Not sending work - last request too recent: 70 sec 2007-12-24 12:48:00 [rosetta@home] Deferring communication for 1 min 0 sec 2007-12-24 12:48:00 [rosetta@home] Reason: no work from project 2007-12-24 12:49:01 [rosetta@home] Sending scheduler request: To fetch work 2007-12-24 12:49:01 [rosetta@home] Requesting 5808 seconds of new work 2007-12-24 12:49:06 [rosetta@home] Scheduler RPC succeeded [server version 601] 2007-12-24 12:49:06 [rosetta@home] Message from server: Not sending work - last request too recent: 66 sec 2007-12-24 12:49:06 [rosetta@home] Deferring communication for 1 min 0 sec 2007-12-24 12:49:06 [rosetta@home] Reason: no work from project 2007-12-24 12:49:14 [rosetta@home] Starting 1acf__BOINC_ABINITIO_VF-S25-9-S3-3--1acf_-vf__2450_6718_0 2007-12-24 12:49:14 [rosetta@home] Starting task 1acf__BOINC_ABINITIO_VF-S25-9-S3-3--1acf_-vf__2450_6718_0 using rosetta_beta version 589 Joachim Dinos are not dead. They are alive and well and living in data centers all around you. They speak in tongues and work strange magics with computers. Beware the dino! |
netwraith Send message Joined: 3 Sep 06 Posts: 80 Credit: 13,483,227 RAC: 0 |
-- You don't need to abort the 5.90 runs... Just shutdown the client and restart. It will save the results.. Just do it after the normal time limit has expired and it won't restart the tasks... Looking for a team ??? Join BoincSynergy!! |
netwraith Send message Joined: 3 Sep 06 Posts: 80 Credit: 13,483,227 RAC: 0 |
-- *CAUTION* Since I originally posted this I had a few weird aborts. Maybe this should be ignored ... If I figure out exactly what happened I will post the issue *CAUTION* Another thing... while your client is down.... If you are adept with a text editor, you can edit the client_state.xml and change the 5.90 version references to 5.91. Just search for '590' It will find lines like: <version_num>590</version_num> for these change the 590 to 591. Then search for 5.90 It will find lines like: <file_name>rosetta_beta_5.90_i686-pc-linux-gnu</file_name> change the .90 to .91 One *CAVEAT* ::: the 5.90 search will also find lines like: <url>https://boinc.bakerlab.org/rosetta/download/rosetta_beta_5.90_i686-pc-linux-gnu</url> *Just leave these alone* Restart the client and 5.91 will be substituted for the 5.90... I don't know what would happen should you don this in the middle of a run, but, since, the alternative could be aborting the process..... I am not sure I would do it. What I would do if I were at Rosetta is re-run all of the Linux 5.90 processes just to be sure that the results are valid. I know about CRC's and checksums, but, I would rather not find out like Intel found out about the bug in the IEEE math processors of yore.... IIIIEEEEEEE!!!! Of course your mileage may vary... Looking for a team ??? Join BoincSynergy!! |
David Emigh Send message Joined: 13 Mar 06 Posts: 158 Credit: 417,178 RAC: 0 |
Here are three examples of tasks that were killed by the watchdog. 128851634 128634832 128360681 All three were of the "1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_..." species. The tasks ran between 1/3 and 1/9 of my usual runtime preference, but apparently completed at least some models/decoys during the time they did run, as they were granted some credit. This seems to me a case of the watchdog doing its job perfectly, as the jobs were aborted without spoiling useful results already generated. I include them in the problems thread because they didn't have a "normal" run, and because these tasks seem to be under special scrutiny right now. Rosie, Rosie, she's our gal, If she can't do it, no one shall! |
BitSpit Send message Joined: 5 Nov 05 Posts: 33 Credit: 4,147,344 RAC: 0 |
Major, major flaws in any 1zpy job with TWIST_RINGS and only those jobs.Any other 1zpy job runs properly. And before anyone blames my computers, I went through Thomas Leibold's computers and his results are showing the same problems. 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_4256_0 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_15109_0 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_3990_0 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_25051_0 1zpy__BOINC_TWIST_RINGS_MORE_SLIDESYMM_FOLD_AND_DOCK-1zpy_-native__2476_4607_0 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_4333_0 1zpy__BOINC_TWIST_RINGS_MORE_SLIDESYMM_FOLD_AND_DOCK-1zpy_-native__2476_4804_0 And in particular, 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 After it crashed, it was still listed as a running task, still accumulating CPU time but not actually running. It was even listed in the job list as a computation error. Message log: 9:02:00 AM Starting 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 9:02:00 AM Starting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 using rosetta_beta version 591 9:02:02 AM [file_xfer] Started upload of file 1q9a__BOINC_NO_SRL_TORSION_RNA_ABMIN-1q9a_-_2473_4714_0_0 9:02:38 AM [file_xfer] Finished upload of file 1q9a__BOINC_NO_SRL_TORSION_RNA_ABMIN-1q9a_-_2473_4714_0_0 9:02:38 AM [file_xfer] Throughput 29612 bytes/sec 9:09:19 AM Sending scheduler request: To report completed tasks 9:09:19 AM Reporting 1 tasks 9:09:24 AM Scheduler RPC succeeded [server version 601] 9:09:24 AM Deferring communication for 4 min 2 sec 9:09:24 AM Reason: requested by project 9:47:51 AM Starting BOINC client version 5.8.11 for i686-pc-linux-gnu 9:47:51 AM log flags: task, file_xfer, sched_ops 9:47:51 AM Libraries: libcurl/7.16.0 OpenSSL/0.9.8d zlib/1.2.3 9:47:51 AM Data directory: /home/armada/nodes/armada5/bin/boinc 9:47:51 AM Processor: 2 GenuineIntel Intel(R) Core(TM)2 CPU 4400 @ 2.00GHz 9:47:51 AM Memory: 1011.04 MB physical, 0 bytes virtual 9:47:51 AM Disk: 70.87 GB total, 64.30 GB free 9:47:51 AM URL: https://boinc.bakerlab.org/rosetta/; Computer ID: 404492; location: (none); project prefs: default 9:47:51 AM General prefs: from rosetta@home (last modified 2007-07-21 12:29:21) 9:47:51 AM Host location: none 9:47:51 AM General prefs: using your defaults 9:47:51 AM Restarting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_3756_0 using rosetta_beta version 591 9:47:51 AM Restarting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 using rosetta_beta version 591 11:07:57 AM Aborting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0: exceeded disk limit: 129.67MB > 95.37MB 11:07:57 AM Deferring communication for 1 min 0 sec 11:07:57 AM Reason: Unrecoverable error for result 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 (Maximum disk usage exceeded) 11:08:02 AM Computation for task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 finished 11:08:02 AM Output file 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0_0 for task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 absent 11:08:03 AM [error] Process 1936 not found 11:08:26 AM Starting 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 11:08:26 AM Starting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 using rosetta_beta version 591 11:43:11 AM Starting BOINC client version 5.8.11 for i686-pc-linux-gnu 11:43:11 AM log flags: task, file_xfer, sched_ops 11:43:11 AM Libraries: libcurl/7.16.0 OpenSSL/0.9.8d zlib/1.2.3 11:43:11 AM Data directory: /home/armada/nodes/armada5/bin/boinc 11:43:11 AM [error] State file error: result 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_4758_0 is in wrong state 11:43:11 AM Processor: 2 GenuineIntel Intel(R) Core(TM)2 CPU 4400 @ 2.00GHz 11:43:11 AM Memory: 1011.04 MB physical, 0 bytes virtual 11:43:11 AM Disk: 70.87 GB total, 64.30 GB free 11:43:11 AM URL: https://boinc.bakerlab.org/rosetta/; Computer ID: 404492; location: (none); project prefs: default 11:43:11 AM General prefs: from rosetta@home (last modified 2007-07-21 12:29:21) 11:43:11 AM Host location: none 11:43:11 AM General prefs: using your defaults 11:43:11 AM Restarting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_3756_0 using rosetta_beta version 591 11:43:12 AM Starting 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_16554_0 11:43:12 AM Starting task 1zpy__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1zpy_-native__2477_16554_0 using rosetta_beta version 591 |
netwraith Send message Joined: 3 Sep 06 Posts: 80 Credit: 13,483,227 RAC: 0 |
Don't worry about the *CAUTION* I fat fingered an edit... Mea Culpa... -- Looking for a team ??? Join BoincSynergy!! |
stewjack Send message Joined: 23 Apr 06 Posts: 39 Credit: 95,871 RAC: 0 |
Joachim in message #4999 mentioned a problem similar to mine. I have a single core CPU, and I have just started getting those limited memory errors when attempting to request new work from Rosetta. --------- 12/24/2007 12:07:28 PM|rosetta@home|Message from server: No work sent 12/24/2007 12:07:28 PM|rosetta@home|Message from server: Your preferences limit memory usage to 691 MB, and 763 MB is needed -------- For whatever it is worth my total system memory is 768 MB Jack |
Astro Send message Joined: 2 Oct 05 Posts: 987 Credit: 500,253 RAC: 0 |
I have a single core CPU, and I have just started getting those limited memory errors when attempting to request new work from Rosetta. Jack, You have 768 MB of "installed" memory. This system requirement refers to "useable" memory (memory not reserved/taken by other things like the operating system). My best guess is that the new wus Izpy Boinc Twist Rings Twist Angles Symm Fold and Dock Relax 1zpy 2477 ? are requiring more memory than you/I/MOST(by most, I mean I think the vast majority of hosts connected to rosetta have 512K or less, although that percentage will lessen over time) of the "normal" crunchers out there, and they don't have any other work queued up for us to participate on. So in effect they're saying "we don't need you at the moment, please come back when we do". One way to stay productive would be to have a cache as large as humanly (computerly???) possible to carry us through these times. You/everyone affected could keep a close eye on the fora and the first time this is mentioned then race to increase your "cpu run time pref" so you could also maintain work for the period in which they have none to offer. Atleast that's my guess. |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
ive got 512 and got a few twist rings in queue. but now it is saying this: rosetta@home|Message from server: No work sent rosetta@home|Message from server: Your computer has 511 MB of memory, and 763 MB is needed luckily i have 7.5 days of work in queue so i can wait a bit. |
stewjack Send message Joined: 23 Apr 06 Posts: 39 Credit: 95,871 RAC: 0 |
Now that you mention it, I think that I remember this problem being discussed on this board. I'm OK for 2 or 3 days at my normal Rosetta 50% duty cycle. Thanks for the reply - Jack |
BitSpit Send message Joined: 5 Nov 05 Posts: 33 Credit: 4,147,344 RAC: 0 |
The 1zpy__BOINC_TWIST_RINGS jobs don't even need 763MB. They only use around 122MB. I hate to say it but I'm done with Rosetta. I've run out of patience. The whole 5.90 thing got me close but the currently flawed jobs have pushed me too far. All the 1zpy__BOINC_TWIST_RINGS are fatally flawed for Linux and these are the ONLY jobs being sent out. I should know. I burned through 70 of them with the abort command. I just can't take the declining quality of the project anymore. |
AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0 |
These two were ended by the Watchdog because they went 900 seconds with no progress: https://boinc.bakerlab.org/rosetta/result.php?resultid=128627315 https://boinc.bakerlab.org/rosetta/result.php?resultid=128614343 Note that both had segmentation violations after the Watchdog tried to shut them down. I also have 512MB machines going idle because they can't get work. |
Vid Vidmar* Send message Joined: 17 Sep 05 Posts: 1 Credit: 75,130 RAC: 0 |
And here is mine on Windows platform. These WUs really seem to be broken, however concerning version 5.90, it is doing its job on other WUs just fine. Greetings, |
Astro Send message Joined: 2 Oct 05 Posts: 987 Credit: 500,253 RAC: 0 |
There's many kinds of that similar wu. These new ones are "twist rings, twist angle, symm fold and dock relax .... 2477 THe emboldened parts are the NEW parts. THe older ones were 2470 as well, and those ran well on my lower mem systems. 1zpy__BOINC_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_?_0 1zpy__BOINC_TWIST_RINGS_MORE_SLIDESYMM_FOLD_AND_DOCK-1zpy_-native__2476_?_0 1zpy__BOINC_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-1zpy_-native__2474_?_0 1zpy__BOINC_TWIST_ANGLE_MORE_SLIDESYMM_FOLD_AND_DOCK-1zpy_-native__2476_?_0 1zpy__BOINC_LESSCYCLES_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK-1zpy_-native__2471_?_0 1zpy__BOINC_LESSCYCLES_TWIST_RINGS_SYMM_FOLD_AND_DOCK-1zpy_-native__2471_?_0 1g2z__BOINC_TWIST_RINGS_TWIST_ANGLE_SYMM_FOLD_AND_DOCK_RELAX-1g2z_-crystal_foldanddock__2469_?_0 Note: the last one is different from the new one because of the "crystal_foldand dock ????" and 1g2z |
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Number crunching :
Problems with version 5.90/5.91
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