My protein fell apart :(

Message boards : Number crunching : My protein fell apart :(

To post messages, you must log in.

AuthorMessage
MattDavis
Avatar

Send message
Joined: 22 Sep 05
Posts: 206
Credit: 1,377,748
RAC: 0
Message 45197 - Posted: 20 Aug 2007, 8:51:51 UTC

Is this normal?


ID: 45197 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile anders n

Send message
Joined: 19 Sep 05
Posts: 403
Credit: 537,991
RAC: 0
Message 45200 - Posted: 20 Aug 2007, 11:23:24 UTC

LOL

No but it has been reported sometimes on Ralph.

Anders n
ID: 45200 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Christoph Jansen
Avatar

Send message
Joined: 6 Jun 06
Posts: 248
Credit: 267,153
RAC: 0
Message 45201 - Posted: 20 Aug 2007, 11:30:58 UTC

That special protein must be biodegradable, but that takes bacteria - so it seems like your machine is infected by something utterly new...

OK, w/o kidding: I noticed that myself some time ago, although not to such an extent. Looks some kind of Lego kit, but nothing to worry about.
ID: 45201 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 45205 - Posted: 20 Aug 2007, 13:23:23 UTC

Yes, part of the fix for the graphics problems of old was to make things thread safe. One of the compromises that was made in order to achieve the graphic stability was to display what is sometimes portions of two different decoy frames at the same time. The alternative was to stop computing until the frame was completely displayed, which would have made the calculations less efficient.

So, basically you've got what looks like side chains from one contortion, and don't yet have a backbone determined for the next.

...either that, or it's another preview of the @home game! "...some assembly may be required" :)
Rosetta Moderator: Mod.Sense
ID: 45205 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
DJStarfox

Send message
Joined: 19 Jul 07
Posts: 145
Credit: 1,237,701
RAC: 242
Message 45208 - Posted: 20 Aug 2007, 14:30:26 UTC - in response to Message 45205.  

...either that, or it's another preview of the @home game! "...some assembly may be required" :)


You just gave me a cool idea for an educational simulation....Assemble your own protein -- to learn how proteins can or cannot connect!
ID: 45208 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
M.L.

Send message
Joined: 21 Nov 06
Posts: 182
Credit: 180,462
RAC: 0
Message 45210 - Posted: 20 Aug 2007, 14:42:45 UTC
Last modified: 20 Aug 2007, 14:43:06 UTC

Try the glue pot! Always try to be so helpful.
ID: 45210 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Mod.Sense
Volunteer moderator

Send message
Joined: 22 Aug 06
Posts: 4018
Credit: 0
RAC: 0
Message 45212 - Posted: 20 Aug 2007, 15:45:25 UTC

Matt, I see a similar task now on my box. It doesn't show the backbone, even over time in other frames. So I now see what you mean, that doesn't look right.
Rosetta Moderator: Mod.Sense
ID: 45212 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Message boards : Number crunching : My protein fell apart :(



©2024 University of Washington
https://www.bakerlab.org