Message boards : Number crunching : Problems with Rosetta version 5.68 and 5.70
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![]() ![]() Send message Joined: 11 Apr 06 Posts: 19 Credit: 74,745 RAC: 0 |
I hope this is on topic: I have received no new work from Rosetta in more than two weeks. I have made Update Requests and Reset the project several times to no avail. What do I need to do? (I use a 3.2GH pentium 4 dual core with 1GB memory under XP 2nd Ed, HOme, and am also running SETI, Einstein, and Climate Prediction projects.) Thanks Stacey |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Stacey, have a look at the discussion in this thread, and if problems getting work persist, please post there. Rosetta Moderator: Mod.Sense |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
I'm the second to have a problem with this one! https://boinc.bakerlab.org/rosetta/workunit.php?wuid=81076322 Haven't had this before. core_client_version>5.8.16</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 36000 # random seed: 1897198 # cpu_run_time_pref: 36000 ********************************************************************** Rosetta score is stuck or going too long. Watchdog is ending the run! Stuck at score 0 for 900 seconds ********************************************************************** GZIP SILENT FILE: .cc2ci2.out ![]() |
![]() Send message Joined: 8 Oct 05 Posts: 3 Credit: 171,969 RAC: 0 |
I just had this workunit error out: https://boinc.bakerlab.org/rosetta/result.php?resultid=89646602. Something about an incorrect function? I'm running the 5.10.7 version of the Boinc client on Windows XP SP2, on a 3.2 Ghz dual Xeon with hyperthreading. |
![]() Send message Joined: 8 Oct 05 Posts: 3 Credit: 171,969 RAC: 0 |
I just had this workunit error out: https://boinc.bakerlab.org/rosetta/result.php?resultid=89646602. Something about an incorrect function? Rosetta version is 5.68. I'm running the 5.10.7 version of the Boinc client on Windows XP SP2, on a 3.2 Ghz dual Xeon with hyperthreading. |
![]() ![]() Send message Joined: 29 Nov 05 Posts: 12 Credit: 190,059 RAC: 0 |
Hi All cool peeps & geeks ! Recently I got this result on rosetta and I was curious what it means and if I should adjust any settings I may have for rosetta or BOINC. Result ID 89702036 Name CNTRL_01ABRELAX_SAVE_ALL_OUT_-1c8cA-_filters_1792_403_0 Workunit 81064633 Created 30 Jun 2007 2:34:00 UTC Sent 30 Jun 2007 2:36:36 UTC Received 30 Jun 2007 13:55:34 UTC Server state Over Outcome Client error Client state Done Exit status 3 (0x3) Computer ID 78725 Report deadline 10 Jul 2007 2:36:36 UTC CPU time 30.671875 stderr out <core_client_version>5.8.16</core_client_version> <![CDATA[ <message> The system cannot find the path specified. (0x3) - exit code 3 (0x3) </message> <stderr_txt> # cpu_run_time_pref: 7200 </stderr_txt> ]]> Validate state Invalid Claimed credit 0.0610518749062124 Granted credit 0 application version 5.68 Thank you for any input you may put forth. *smile* Geothermal ![]() |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Jon seems to have this error frequently. Windows XP home SP1. Generally within 30 seconds of starting a task. Some tasks run fine, others get the: The system cannot find the path specified. (0x3) - exit code 3 (0x3) link to Jon's results page Rosetta Moderator: Mod.Sense |
svincent Send message Joined: 30 Dec 05 Posts: 219 Credit: 12,120,035 RAC: 16 |
I seem to be having a number of tasks that appear to be stuck at 0%. The latest is CNTRL_01ABRELAX_SAVE_ALL_OUT_-1bk2_-_filters_1792_2981_0 ( workunit 81530519 on Rosetta 5.68 ). I don't see any other reports about this problem : is it just my system ( IMac2 under OSX 10.4.10 ) or are other users letting the watchdog thread terminate it automatically? |
![]() Send message Joined: 5 May 07 Posts: 2 Credit: 58,047 RAC: 0 |
Good Day Folks, First time posting here, though i have been reading these forums for a while now. Recently all of my completed WU's are returning 'Client Error'. <core_client_version>5.8.16</core_client_version> <![CDATA[ <message> app_version download error: couldn't get input files: <file_xfer_error> <file_name>rosetta_5.68_windows_intelx86.exe</file_name> <error_code>-120</error_code> <error_message>signature verification error</error_message> </file_xfer_error> </message> ]]> I am using version 5.68 This has only recently happened. Any ideas as to why? |
![]() ![]() Send message Joined: 30 May 06 Posts: 5690 Credit: 5,859,226 RAC: 381 ![]() |
every single time RAH goes to download a file (from the 3rd to currently) it comes back with these types messages: 7/5/2007 4:10:49 PM|rosetta@home|Sending scheduler request: To fetch work 7/5/2007 4:10:49 PM|rosetta@home|Requesting 12 seconds of new work 7/5/2007 4:10:54 PM|rosetta@home|Scheduler RPC succeeded [server version 509] 7/5/2007 4:10:54 PM|rosetta@home|Deferring communication for 4 min 2 sec 7/5/2007 4:10:54 PM|rosetta@home|Reason: requested by project 7/5/2007 4:10:56 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321_.fasta.gz 7/5/2007 4:10:56 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321_.psipred_ss2.gz 7/5/2007 4:10:59 PM||Project communication failed: attempting access to reference site 7/5/2007 4:10:59 PM|rosetta@home|[file_xfer] Temporarily failed download of nterm_hom001_t321_.fasta.gz: system connect 7/5/2007 4:10:59 PM|rosetta@home|[file_xfer] Temporarily failed download of nterm_hom001_t321_.psipred_ss2.gz: system connect 7/5/2007 4:10:59 PM|rosetta@home|[file_xfer] Started download of file boinc_nterm_hom001_aat321_03_05.200_v1_3.gz 7/5/2007 4:10:59 PM|rosetta@home|[file_xfer] Started download of file boinc_nterm_hom001_aat321_09_05.200_v1_3.gz 7/5/2007 4:11:01 PM||Access to reference site succeeded - project servers may be temporarily down. 7/5/2007 4:11:02 PM||Project communication failed: attempting access to reference site 7/5/2007 4:11:02 PM|rosetta@home|[file_xfer] Temporarily failed download of boinc_nterm_hom001_aat321_03_05.200_v1_3.gz: system connect 7/5/2007 4:11:02 PM|rosetta@home|[file_xfer] Temporarily failed download of boinc_nterm_hom001_aat321_09_05.200_v1_3.gz: system connect 7/5/2007 4:11:02 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321.pdb.gz 7/5/2007 4:11:03 PM||Access to reference site succeeded - project servers may be temporarily down. 7/5/2007 4:11:03 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321_.fasta.gz 7/5/2007 4:11:05 PM||Project communication failed: attempting access to reference site 7/5/2007 4:11:05 PM|rosetta@home|[file_xfer] Finished download of file nterm_hom001_t321_.fasta.gz 7/5/2007 4:11:05 PM|rosetta@home|[file_xfer] Throughput 402 bytes/sec 7/5/2007 4:11:05 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321_.psipred_ss2.gz 7/5/2007 4:11:05 PM|rosetta@home|[file_xfer] Temporarily failed download of nterm_hom001_t321.pdb.gz: system connect 7/5/2007 4:11:06 PM||Access to reference site succeeded - project servers may be temporarily down. 7/5/2007 4:11:06 PM|rosetta@home|[file_xfer] Finished download of file nterm_hom001_t321_.psipred_ss2.gz 7/5/2007 4:11:06 PM|rosetta@home|[file_xfer] Throughput 3420 bytes/sec 7/5/2007 4:11:06 PM|rosetta@home|[file_xfer] Started download of file boinc_nterm_hom001_aat321_03_05.200_v1_3.gz 7/5/2007 4:11:06 PM|rosetta@home|[file_xfer] Started download of file boinc_nterm_hom001_aat321_09_05.200_v1_3.gz 7/5/2007 4:11:10 PM|rosetta@home|[file_xfer] Finished download of file boinc_nterm_hom001_aat321_09_05.200_v1_3.gz 7/5/2007 4:11:10 PM|rosetta@home|[file_xfer] Throughput 80298 bytes/sec 7/5/2007 4:11:10 PM|rosetta@home|[file_xfer] Started download of file nterm_hom001_t321.pdb.gz 7/5/2007 4:11:12 PM|rosetta@home|[file_xfer] Finished download of file nterm_hom001_t321.pdb.gz 7/5/2007 4:11:12 PM|rosetta@home|[file_xfer] Throughput 32495 bytes/sec 7/5/2007 4:11:16 PM|rosetta@home|[file_xfer] Finished download of file boinc_nterm_hom001_aat321_03_05.200_v1_3.gz 7/5/2007 4:11:16 PM|rosetta@home|[file_xfer] Throughput 101298 bytes/sec |
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
No, the workunits that greg_be posted about should be pretty standard workunits -- I don't think they're memory hungry and we've run that type before... so I'm afraid I don't have much advice here! Rhiju? Is there any variation in these tasks as to some requesting large memory and some not? |
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Hi Jon and Mod.Sense -- weird, this looks like a system-specific issue. Might be worth restarting BOINC (or even the computer). I wonder if Jon is running something else in parallel that's asking a lot from his hard drive? Jon seems to have this error frequently. Windows XP home SP1. Generally within 30 seconds of starting a task. Some tasks run fine, others get the: |
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
We've had a lot of trouble getting graphics working on linux boxes and that may not change... right now, our priorities are to get an optimized version for 64bit windows (and linux!) so that Rosetta can get the most out of your machines. We're getting a test machine in the next few weeks... ok... here's a post with no probs !! |
Evan Send message Joined: 23 Dec 05 Posts: 268 Credit: 402,585 RAC: 0 |
This one: 1vcc__BOINC_ABRELAX_HB1.5_SAVE_ALL_OUT_BARCODE-1vcc_-frags83__1824_793_0 has stalled twice at step 29043 resultid 90824783 |
Marky-UK Send message Joined: 1 Nov 05 Posts: 73 Credit: 1,689,495 RAC: 0 |
Just had this failure, the first one ever on this host I think: 91030536 core_client_version>5.10.7</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # random seed: 1086965 No heartbeat from core client for 31 sec - exiting SIGSEGV: segmentation violation Stack trace (13 frames): [0x8cf2edb] [0x8cedd0c] [0xffffe420] [0x8c5d2db] [0x8b63872] [0x8c44d10] [0x849ba9e] [0x80dae11] [0x85c8e17] [0x86f632b] [0x86f63d6] [0x8d56dd4] [0x8048111] Exiting... </stderr_txt> ]]> |
LBobrycki Send message Joined: 6 Jun 06 Posts: 1 Credit: 16,756 RAC: 0 |
I have been having trouble since the beginning with computer lockups. I downloaded the program over a year ago and want to participate but I can't keep cold-starting my computer when Boinc freezes. I lose all of my open files. I estimate that it has happened over 3 dozen times. What is going on? Lori Bobrycki lbobrycki@yahoo.com |
FoX Send message Joined: 11 Dec 05 Posts: 4 Credit: 2,304,747 RAC: 0 |
Hi everyone i am taking part of the project with my pc, p3 500 katamai ram 192 mb linux 2.6.21 . Using the rosetta beta 5.70 version i found a bug: CPU time does not show the exact timing, the counter adds one second every 6-7 real seconds. Work units last for a long time (12/13 hours) and the timing that is shown is wrong. This does not happen with version 5.68 in which wu last about 2 3 hours. |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
LBobrycki: You are still using the same version of BOINC that you probably downloaded a year ago. There have been many improvements made to the BOINC environment (which Rosetta is running within) since that time. The current BOINC version should be more stable for you. Here are some Q&A items to get you started with further info: How do I know what version of BOINC I am running? How can I check what the current BOINC version available is? How do I install a new version of BOINC without losing my existing work? It's all much easier then it sounds when you write it all out. FoX: Nothing in the Rosetta version has changed the target runtimes. But each type of task runs differently. Some take a long time to complete a single model. The estimated time to completion is updated every 5 seconds. The twitches in between are BOINC making calculation based on the CPU time increasing as compared to the % completed, which is also only updated every 5 seconds. Rosetta Moderator: Mod.Sense |
FoX Send message Joined: 11 Dec 05 Posts: 4 Credit: 2,304,747 RAC: 0 |
Thank you for your message Mod.Sense but i think i've not explained the situation. I am referring to "CPU time" bar, not "To completion" bar (i know that "To completion" is an estimated time). The WU on rosetta 5.70 beta show a "CPU time" of "X" but the true time is about "6*X". This doesn't happen in rosetta 5.68. Is this normal? Thank you, bye |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Your CPU time is an indication of the amount of CPU time that has been spent processing the task. If your CPU time only adds one second every 5 seconds then it means your PC was busy working on other applications and only had enough low priority CPU time left to give 1 second to BOINC. ...that or there is a BOINC setting for the % of CPU that you want BOINC to utilize. If you had it set to 20% and had no other applications running on your PC, that would cause the same 1 second of CPU time per 5 seconds of time passing. This setting is in your General Preferences. It is generally used to control heat output of the CPU. For that purpose, you will probably find that a setting of 70-80% will reduce heat levels considerably. [edit] FoX, it looks like your Linux box only has 187MB of memory? You may have hit one of the tasks that requires more memory then most, and your machine may be spending considerable time doing page faults. Also possible that the task is suspended by BOINC with a status of "waiting for memory". Rosetta Moderator: Mod.Sense |
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Number crunching :
Problems with Rosetta version 5.68 and 5.70
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