Lots of decoys!

Author	Message
MattDavis Send message Joined: 22 Sep 05 Posts: 206 Credit: 1,377,748 RAC: 0	Message 41228 - Posted: 21 May 2007, 1:06:28 UTC I have a four hour runtime and usually get anywhere between 1 and 30 decoys, depending on the computer. This work unit was uploaded with 353! Is that normal? https://boinc.bakerlab.org/rosetta/result.php?resultid=81158543 ID: 41228 · Rating: 0 · rate: / Reply Quote

Admin Send message Joined: 13 Apr 07 Posts: 42 Credit: 260,782 RAC: 0	Message 41229 - Posted: 21 May 2007, 2:05:28 UTC Just ran one of those yesterday with about the same amount, it was somehwere around 350. ID: 41229 · Rating: 0 · rate: / Reply Quote

Ingemar Send message Joined: 28 Feb 06 Posts: 20 Credit: 1,680 RAC: 0	Message 41233 - Posted: 21 May 2007, 6:41:17 UTC Yes! These are my runs and they are as you point out very fast. Suspiciously fast one might think, but everything is as should be. Thanks for keeping an eye on this! ID: 41233 · Rating: 0 · rate: / Reply Quote

JChojnacki Send message Joined: 17 Sep 05 Posts: 71 Credit: 10,033,868 RAC: 5,739	Message 41328 - Posted: 23 May 2007, 1:58:32 UTC Wow, now this is a lot of decoys: From one of my WU's ====================================================== DONE :: 1 starting structures 86400.4 cpu seconds This process generated 1629 decoys from 1629 attempts Though, I do run my for 24 hours each. ;-) Cool. ID: 41328 · Rating: 0 · rate: / Reply Quote

Conan Send message Joined: 11 Oct 05 Posts: 150 Credit: 3,858,040 RAC: 1,931	Message 41336 - Posted: 23 May 2007, 9:18:19 UTC Yes I have seen that an occassional one give heaps of decoys while the others only small numbers Celeron1 (WU 73066862)= 253 Celeron2 (WU 72935383)= 260 Celeron3 (WU 73068644)= 302 Opteron 275 (WU 73172179)= 436 Opteron 275 (WU 73128010)= 500 All on 6 hour run times. During the same period have also seen as low as 4 decoys. ID: 41336 · Rating: 0 · rate: / Reply Quote

Greg_BE Send message Joined: 30 May 06 Posts: 5664 Credit: 5,711,666 RAC: 626	Message 41397 - Posted: 24 May 2007, 18:25:52 UTC Last modified: 24 May 2007, 18:27:54 UTC this wu produced 473 decoys in 6 hrs. so if you multiply that by 4 would give you 1892 decoys on a AMD 2800+ cpu. run time was 21583.6 seconds ID: 41397 · Rating: 0 · rate: / Reply Quote

Sir Antony Magnus Send message Joined: 28 Nov 05 Posts: 31 Credit: 526,750 RAC: 0	Message 41409 - Posted: 25 May 2007, 1:32:59 UTC OK, this may be a stupid question, but my curiousity has no bounds. What pray tell is the purpose for the decoy? Have yet to see any sign of them on my boxes? Antony ID: 41409 · Rating: 0 · rate: / Reply Quote

Greg_BE Send message Joined: 30 May 06 Posts: 5664 Credit: 5,711,666 RAC: 626	Message 41416 - Posted: 25 May 2007, 8:11:34 UTC - in response to Message 41409. Last modified: 25 May 2007, 8:11:51 UTC see here for what the terms mean. Decoy is in the list as well. OK, this may be a stupid question, but my curiousity has no bounds. What pray tell is the purpose for the decoy? Have yet to see any sign of them on my boxes? Antony ID: 41416 · Rating: -1 · rate: / Reply Quote

Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0	Message 41424 - Posted: 25 May 2007, 12:35:10 UTC Seems a "decoy" is a hold over term from when they felt they were searching for the one and only exactly perfect matching structure. In other words, you are crunching along and things look ok, and so you think you are on to the right model, but later find it didn't match the native structure and you were following a "decoy". There is the native structure, and anything else is a decoy. Decoys are the models of how this protein or RNA, of docking pair COULD appear in nature. The more models you study, the more likely that one of them is correct, or very close. Rosetta Moderator: Mod.Sense ID: 41424 · Rating: -1 · rate: / Reply Quote