Message boards : Number crunching : Report Problems with Rosetta Version 5.25
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mnb Send message Joined: 15 Dec 05 Posts: 51 Credit: 69,458 RAC: 0 |
I have the strangest problem with 5.25. According to Zone Alarm it's trying to access internet on its own. It says Rosetta_5,25_windows_intelx86.exe is trying to access internet. And it doesn't matter if I allow it to do that or not. The work unit stops running at the same time. If I suspend that work unit the results page will show client error for that work unit. If I close Boinc and restart it again the work unit starts to compute again from a previous check point, but soon it will halt again. I've had a few blue screens as well and had to reboot. For the record: 5.25 is the first version I've had any problems with. list of my results |
TCU Computer Science Send message Joined: 7 Dec 05 Posts: 28 Credit: 12,861,977 RAC: 0 |
Here is another one: t329__MAPBACK_CLUSTER02_CASP7_ABRELAX_SAVE_ALL_OUT_CONTACT_ncap_hom001__826_17779 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=22976377 It was running for four days. The messages show it being paused and resumed at one hour intervals. But the accumulated time was stuck at 7 hr 48 mins. Stopped and restarted boinc, the accumulated time began increasing, and the work unit finished normally about 30 minutes later. This occurred on a Linux box different from the previous one. |
R.L. Casey Send message Joined: 7 Jun 06 Posts: 91 Credit: 2,728,885 RAC: 0 |
PILOT ERROR... LOST WUs I have apparently "lost" a number of WUs--all sent on July 4. These will not report from from host Computer ID "246746". These WUs are as follows: ResultID WUID Time Sent Deadline ======== ======== ====================== ======================= 26988429 22969795 4 Jul 2006 6:20:24 UTC 11 Jul 2006 6:20:24 UTC 26988412 22969778 4 Jul 2006 6:20:24 UTC 11 Jul 2006 6:20:24 UTC 26988411 22969777 4 Jul 2006 6:20:24 UTC 11 Jul 2006 6:20:24 UTC 26988118 22969486 4 Jul 2006 6:16:16 UTC 11 Jul 2006 6:16:16 UTC 26988077 22969445 4 Jul 2006 6:16:16 UTC 11 Jul 2006 6:16:16 UTC 26988076 22969444 4 Jul 2006 6:16:16 UTC 11 Jul 2006 6:16:16 UTC 26987457 22968903 4 Jul 2006 6:10:09 UTC 11 Jul 2006 6:10:09 UTC 26987456 22968902 4 Jul 2006 6:10:09 UTC 11 Jul 2006 6:10:09 UTC 26987443 22968889 4 Jul 2006 6:10:09 UTC 11 Jul 2006 6:10:09 UTC 26986960 22968483 4 Jul 2006 6:04:04 UTC 11 Jul 2006 6:04:04 UTC 26986945 22968468 4 Jul 2006 6:04:04 UTC 11 Jul 2006 6:04:04 UTC 26986915 22968438 4 Jul 2006 6:04:04 UTC 11 Jul 2006 6:04:04 UTC 26986338 22967866 4 Jul 2006 5:57:57 UTC 11 Jul 2006 5:57:57 UTC 26986333 22967861 4 Jul 2006 5:57:57 UTC 11 Jul 2006 5:57:57 UTC 26986230 22967763 4 Jul 2006 5:57:57 UTC 11 Jul 2006 5:57:57 UTC My regrets to all; I believe that this was a one-time occurrence! Happy crunching! :-) |
Richard Cooper Send message Joined: 9 Jul 06 Posts: 1 Credit: 36,525 RAC: 0 |
I just loaded BOINC on a Linux system (SuSE 10.1, 2.6.16.13-4-smp) and started Rosetta. My first two work units both seen to have failed, although I got credit. stderr from one result.... <core_client_version>5.4.9</core_client_version> <stderr_txt> Graphics are disabled due to configuration... # random seed: 1553230 SIGSEGV: segmentation violation Stack trace (15 frames): [0x8849d1b] [0x8861dcc] [0xffffe500] [0x8841478] [0x863320c] [0x861f8fb] [0x87efda3] [0x87382c1] [0x87e5783] [0x82c63a1] [0x805f09d] [0x846e09d] [0x8470594] [0x88c12b4] [0x8048111] Exiting... SIGSEGV: segmentation violation Stack trace (24 frames): [0x8849d1b] [0x8861dcc] [0xffffe500] [0x88e2066] [0x88e2543] [0x88b36d1] [0x88b50f9] [0x829f301] [0x88c88bf] [0x8849d66] [0x8861dcc] [0xffffe500] [0x8841478] [0x863320c] [0x861f8fb] [0x87efda3] [0x87382c1] [0x87e5783] [0x82c63a1] [0x805f09d] [0x846e09d] [0x8470594] [0x88c12b4] [0x8048111] Exiting... Graphics are disabled due to configuration... # random seed: 1553230 # cpu_run_time_pref: 10800 *** glibc detected *** corrupted double-linked list: 0x09540f00 *** SIGABRT: abort called Stack trace (14 frames): [0x8849d1b] [0x8861dcc] [0xffffe500] [0x88c8374] [0x88dd1ff] [0x88e2376] [0x88e2543] [0x88b36d1] [0x88b50f9] [0x8278866] [0x88c88bf] [0x885910f] [0x8863035] [0x88f47ea] Exiting... Graphics are disabled due to configuration... # cpu_run_time_pref: 10800 # DONE :: 1 starting structures built 11 (nstruct) times # This process generated 11 decoys from 11 attempts BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> Richard Cooper |
![]() ![]() Send message Joined: 5 Jun 06 Posts: 180 Credit: 1,586,889 RAC: 0 |
Just thought I would post these recent errors. 7/10/2006 7:25:16 PM|rosetta@home|Unrecoverable error for result t319__CASP7_JUMPRELAX_SAVE_ALL_OUT_BARCODE_CONTACT_hom013__739_9660_0 (Incorrect function. (0x1) - exit code 1 (0x1)) 7/10/2006 7:25:26 PM|rosetta@home|Unrecoverable error for result t347__CASP7_ABRELAX_SAVE_ALL_OUT_6to90hom017__842_2583_0 (Incorrect function. (0x1) - exit code 1 (0x1)) <core_client_version>5.4.9</core_client_version> <stderr_txt> WARNING! attempt to gzip file .aat329.out failed: file does not exist. # DONE :: 1 starting structures built 0 (nstruct) times # This process generated 0 decoys from 0 attempts # 1 starting pdbs were skipped BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message> <file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1150_858_4_2_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ![]() |
![]() ![]() Send message Joined: 5 Jun 06 Posts: 180 Credit: 1,586,889 RAC: 0 |
Also, noticed this in the messages section. 7/10/2006 7:26:54 PM|rosetta@home|Finished download of file truncate1_hom020_t349_forceand_kill_strands_fix.bar.gz Anything going on that we should be worried about if we have clients that are not looked at on a daily basis? ![]() |
![]() ![]() Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
John, I have no way to be certain either, but thought I'd point out that so far as work unit naming goes, I wouldn't read too much in to the word "fix" any more then the word "relax" or "jump". Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
_heinz Send message Joined: 30 Jun 06 Posts: 24 Credit: 38,697 RAC: 0 |
After some errors at the beginning the project runs now fine, no further errors occured on my machine happy crunching :-) ![]() |
![]() ![]() Send message Joined: 2 Nov 05 Posts: 257 Credit: 3,532,399 RAC: 2 |
The client still cannot endure a normal computer restart for Windows Updates (or other restarts) without forgetting where it was, turning an error, and starting a new job. 50,779.30 seconds lost on result ID 28003895 work ID 23917872. |
John Parsons Send message Joined: 3 Mar 06 Posts: 1 Credit: 10,831 RAC: 0 |
Screen Saver Freezes when key pressed or mouse moves. ONLY HAPPENS if rosetta is running (does not happen with seti) and if preferences are set to not run when computer is active. I suspect that the "not running" gets triggered before the screen saver has gone away, locking the screen saver. The mouse cursor still moves but no processing is being done and the screen saver does not go away. If "run always" is set problem does not happen. |
[AF>Linux]Arnaud![]() Send message Joined: 17 Sep 05 Posts: 38 Credit: 10,490 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=28271572 process exited with code 131 (0x83) Arnaud |
Ian Send message Joined: 14 Apr 06 Posts: 29 Credit: 292,579 RAC: 87 |
Flurry of snafus From 14 Jul, 17:30 and on https://boinc.bakerlab.org/rosetta/result.php?resultid=28364638 https://boinc.bakerlab.org/rosetta/result.php?resultid=28351566 https://boinc.bakerlab.org/rosetta/result.php?resultid=28343113 Then a string of success and one more snafu at 21:18: https://boinc.bakerlab.org/rosetta/result.php?resultid=28482985 All 131 (0x83), all on a Mac mini (G4) I did notice at one point yesterday that no graphic was showing up on the screensaver. Don't know if that's a factor. Ian Cundell, St Albans, UK |
![]() ![]() Send message Joined: 2 Nov 05 Posts: 87 Credit: 3,019,449 RAC: 0 |
Vester Wrote: The client still cannot endure a normal computer restart for Windows Updates (or other restarts) without forgetting where it was, turning an error, and starting a new job. With the recent round of Windows fixes/updates I've had several machines do the same thing on reboot, though I think it's more a matter of files getting corrupted than forgetting where it was... It's probably from BOINC shutting down on command and Rosetta stays running... |
Sam Miorelli Send message Joined: 16 Feb 06 Posts: 7 Credit: 1,303,044 RAC: 0 |
I just had another WU crash on my PowerMac G4 500Mhz machine: Sat Jul 15 19:10:51 2006|rosetta@home|Unrecoverable error for result t349__CASP7_MINHELIX_ABRELAX_SAVE_ALL_OUT_BARCODE_truncate1_hom001__965_55051_1 (process exited with code 131 (0x83) This is the same error code that Rosetta reported last time a WU crashed on my PowerMac. This new phenomena of compute errors on my Mac is only a 5.25 issue - the last version never errored out on the Mac. Here's the new work unit in question: 24413558 What does this error code mean? |
![]() ![]() Send message Joined: 24 Sep 05 Posts: 28 Credit: 4,126,213 RAC: 245 |
A t354 error (signal 11) on Linux. https://boinc.bakerlab.org/rosetta/result.php?resultid=28762369 Next Rosetta WU failed to start after error. Restarting BOINC fixed that problem. Running 100% Rosetta (CPDN suspended) on this machine (HT). |
Ananas Send message Joined: 1 Jan 06 Posts: 232 Credit: 752,471 RAC: 0 |
Illegal function - often that's a missing DLL but that cannot be the reason after 8 hours : <message>Unzul�ssige Funktion. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # random seed: 3340663 # cpu_run_time_pref: 36000 ERROR:: Exit at: .dock_structure.cc line:401 Probably a memory shortage, the box has only 512MB but 4 tasks running plus some paused. I will finish the Einsteins that still occupy some RAM and set them to "no new work", so the Rosettas only have to share the memory with one Sulphur model. |
TCU Computer Science Send message Joined: 7 Dec 05 Posts: 28 Credit: 12,861,977 RAC: 0 |
Here is another one: t321__CASP7_ABRELAX_SAVE_ALL_OUT_nterm_hom004__685_15852 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=23020078 It was running for six days. The messages show it being paused and resumed at one hour intervals. But the accumulated time was stuck at 8 hr 16 mins. When I stopped boinc, I noticed that the process for that work unit remained in the process list. I rebooted the machine and the work unit finished immediately. This occurred on a Linux box different from the previous ones. |
Ananas Send message Joined: 1 Jan 06 Posts: 232 Credit: 752,471 RAC: 0 |
OT: I see your result shows "Graphics are disabled due to configuration" I want that too, how did you do that? Is there a "lite" version for download somewhere? |
BennyRop Send message Joined: 17 Dec 05 Posts: 555 Credit: 140,800 RAC: 0 |
"Graphics are disabled due to configuration" I'd assume that is the comment in the log when you have your system setup with Boinc running as a service install. (Mine should give the same message.) |
Astro![]() Send message Joined: 2 Oct 05 Posts: 987 Credit: 500,253 RAC: 0 |
I use the boinc Alpha test version 5.5.6 and when installed as a service and initially started, I see the following in my "messages" tab which tells me graphics won't be used: 7/15/2006 11:09:48 PM||Starting BOINC client version 5.5.6 for windows_intelx86 7/15/2006 11:09:48 PM||Libraries: libcurl/7.15.4 OpenSSL/0.9.8a zlib/1.2.3 7/15/2006 11:09:48 PM||Executing as a daemon 7/15/2006 11:09:48 PM||Data directory: C:Program FilesBOINC 7/15/2006 11:09:48 PM||BOINC is running as a service and as a non-system user. 7/15/2006 11:09:48 PM||No application graphics will be available. |
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Report Problems with Rosetta Version 5.25
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