Report Problems with Rosetta Version 5.25

Author	Message
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0	Message 19529 - Posted: 30 Jun 2006, 4:36:34 UTC Thanks for posting problems with the new app here... ID: 19529 · Rating: 0 · rate: / Reply Quote

tralala Send message Joined: 8 Apr 06 Posts: 376 Credit: 581,806 RAC: 0	Message 19591 - Posted: 30 Jun 2006, 19:34:21 UTC I just got this WU. Its named Fra_t103_Casp7... I assume that is a typo and probably means t303 since no t103 exists in CASP7. ID: 19591 · Rating: 0 · rate: / Reply Quote

Keith Akins Send message Joined: 22 Oct 05 Posts: 176 Credit: 71,779 RAC: 0	Message 19600 - Posted: 1 Jul 2006, 2:42:22 UTC When the last 5.24 WU finished and the first 5.25 WU began a wierd graphics glitch appeared just for a second, then cleared up. Probably just the transition. Eyes pealed. ID: 19600 · Rating: 0 · rate: / Reply Quote

tralala Send message Joined: 8 Apr 06 Posts: 376 Credit: 581,806 RAC: 0	Message 19626 - Posted: 1 Jul 2006, 12:15:23 UTC - in response to Message 19591. I just got this WU. Its named Fra_t103_Casp7... I assume that is a typo and probably means t303 since no t103 exists in CASP7. Now I got a WU named "FRA_t130_CASP7...". This seems to be a typo as well. Rhiju can you comment on that? ID: 19626 · Rating: 0 · rate: / Reply Quote

J D K Send message Joined: 23 Sep 05 Posts: 168 Credit: 101,266 RAC: 0	Message 19661 - Posted: 2 Jul 2006, 1:53:49 UTC Just had eight tasks do this, Result ID 26682014 Name FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_41_852_26_1 Workunit 22693343 Created 2 Jul 2006 1:12:20 UTC Sent 2 Jul 2006 1:14:26 UTC Received 2 Jul 2006 1:35:10 UTC Server state Over Outcome Client error Client state Computing Exit status 0 (0x0) Computer ID 178904 Report deadline 9 Jul 2006 1:14:26 UTC CPU time 22.765625 stderr out <core_client_version>5.4.9</core_client_version> <stderr_txt> WARNING! attempt to gzip file .aat329.out failed: file does not exist. # DONE :: 1 starting structures built 0 (nstruct) times # This process generated 0 decoys from 0 attempts # 1 starting pdbs were skipped BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message> <file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_41_852_26_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> Validate state Invalid Claimed credit 0.0410291910172216 Granted credit 0 application version 5.25 running 840ee ht enabled, 3 gig ram BOINC Wiki ID: 19661 · Rating: 0 · rate: / Reply Quote

anders n Send message Joined: 19 Sep 05 Posts: 403 Credit: 537,991 RAC: 0	Message 19666 - Posted: 2 Jul 2006, 3:39:52 UTC I just had 3 of these attempt to gzip file .aat329.out failed: file does not exist https://boinc.bakerlab.org/rosetta/result.php?resultid=26668963 https://boinc.bakerlab.org/rosetta/result.php?resultid=26668283 https://boinc.bakerlab.org/rosetta/result.php?resultid=26651438 Anders n ID: 19666 · Rating: 0 · rate: / Reply Quote

Mark Henderson Send message Joined: 24 May 06 Posts: 9 Credit: 643,001 RAC: 0	Message 19672 - Posted: 2 Jul 2006, 5:14:49 UTC Same Here...... ID: 19672 · Rating: 0 · rate: / Reply Quote

Ananas Send message Joined: 1 Jan 06 Posts: 232 Credit: 752,471 RAC: 0	Message 19674 - Posted: 2 Jul 2006, 6:01:05 UTC Last modified: 2 Jul 2006, 6:19:07 UTC 2 errors with FRA_t329... here too. But I just see ... I have one FRA_t329 that is running and survived the first few seconds (at 6 hours now, going for 10 hours) : wuid=22684007 so it is probably not the whole series. Damaged : FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_502_852_6 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1230_852_1 running : FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_560_852_6 The gzip error and the -161 are not the cause of this btw., it's just a followup error, the result file that has not been created, caused by some different error that happened before. ID: 19674 · Rating: 0 · rate: / Reply Quote

Shoikan Send message Joined: 4 Apr 06 Posts: 14 Credit: 180,211 RAC: 0	Message 19678 - Posted: 2 Jul 2006, 9:07:30 UTC I've had 5 FRA_t329 WU's resulting in compute errors just in a few seconds of computing all in a row and with different computers. Here they are: 26659064 26667400 26668807 26669392 26670318 Regards ID: 19678 · Rating: 0 · rate: / Reply Quote

_heinz Send message Joined: 30 Jun 06 Posts: 24 Credit: 38,697 RAC: 0	Message 19680 - Posted: 2 Jul 2006, 9:58:01 UTC Last modified: 2 Jul 2006, 10:03:26 UTC I got the following error: 02.07.2006 11:53:51\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1171_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1171_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 26652396 <---- ID: 19680 · Rating: 0 · rate: / Reply Quote

_heinz Send message Joined: 30 Jun 06 Posts: 24 Credit: 38,697 RAC: 0	Message 19685 - Posted: 2 Jul 2006, 12:44:18 UTC Last modified: 2 Jul 2006, 12:45:49 UTC next errors happen 02.07.2006 14:30:17\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_115_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_115_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02.07.2006 14:30:51\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1150_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1150_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02.07.2006 14:31:26\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1099_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1099_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) look here ----> 26652379 26652378 26652337 ID: 19685 · Rating: 0 · rate: / Reply Quote

[DPC]Division_Brabant~OldButNotSoWise Send message Joined: 23 Jan 06 Posts: 42 Credit: 371,797 RAC: 0	Message 19686 - Posted: 2 Jul 2006, 12:52:17 UTC Last modified: 2 Jul 2006, 12:57:57 UTC 02/07/2006 12:23:25\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1161_852_10_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1161_852_10_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 12:53:50\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_100_852_8_1 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_100_852_8_1_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:41:21\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_112_852_8_1 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_112_852_8_1_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:41:56\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_108_852_6_1 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_108_852_6_1_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:42:32\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1088_852_8_1 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1088_852_8_1_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) etc etc etc Second PC: 02/07/2006 10:45:33\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1378_852_24_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1378_852_24_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 10:46:08\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1278_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1278_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 10:46:41\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1292_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1292_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 11:30:30\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1308_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1308_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 12:16:34\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_133_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_133_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:04:57\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_42_852_11_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_42_852_11_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:05:32\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_326_852_14_1 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_326_852_14_1_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02/07/2006 13:06:04\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_390_852_18_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_390_852_18_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) etc etc etc After checking my workqeue and noticed he was filled with the same WU's, I've reset the project. ID: 19686 · Rating: 0 · rate: / Reply Quote

AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0	Message 19690 - Posted: 2 Jul 2006, 14:04:45 UTC Had the 5 second bomb-out with gzip error and -161 exit with: FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1987_852_6_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_208_852_6_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_49_852_7_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_248_852_19_0 ID: 19690 · Rating: 0 · rate: / Reply Quote

Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0	Message 19693 - Posted: 2 Jul 2006, 15:31:21 UTC - in response to Message 19690. Thanks, we're looking into these problems! Had the 5 second bomb-out with gzip error and -161 exit with: FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1987_852_6_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_208_852_6_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_49_852_7_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_248_852_19_0 ID: 19693 · Rating: 0 · rate: / Reply Quote

_heinz Send message Joined: 30 Jun 06 Posts: 24 Credit: 38,697 RAC: 0	Message 19702 - Posted: 2 Jul 2006, 17:01:48 UTC next error: 02.07.2006 18:16:06\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1152_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1152_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 02.07.2006 18:53:08\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1087_852_28_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1087_852_28_0_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>) 26652329 26652338 26652380 26652397 ID: 19702 · Rating: 0 · rate: / Reply Quote

Reverend Scott E. Lee Send message Joined: 14 Jun 06 Posts: 1 Credit: 2,570 RAC: 0	Message 19707 - Posted: 2 Jul 2006, 19:02:05 UTC FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1468_858_8_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1488_858_8_0 FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1523_858_8_0 I suspended rosetta after these three died on the table. They all had this: Unrecoverable error for result above (<file_xfer_error> <file_name>above</file_name> <error_code>-161</error_code> </file_xfer_error>) I have seven more WUs that will probably die the same, horrid death. -The Rev. ID: 19707 · Rating: 0 · rate: / Reply Quote

Studer SL Send message Joined: 6 Jun 06 Posts: 28 Credit: 11,166 RAC: 0	Message 19709 - Posted: 2 Jul 2006, 20:09:54 UTC This task crashed about 1 minute 30 seconds in - - 7/2/2006 3:54:56 PM\|rosetta@home\|Starting task FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1479_858_4_0 using rosetta version 525 7/2/2006 3:55:28 PM\|rosetta@home\|Computation for task FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1479_858_4_0 finished 7/2/2006 3:55:29 PM\|rosetta@home\|Unrecoverable error for result FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1479_858_4_0 (<file_xfer_error> <file_name>FRA_t329_CASP7_hom001_6_t329_6_2ah5A_IGNORE_THE_REST_1479_858_4_0_0</file_name> <error_code>-161</error_code></file_xfer_error>) This task started after the above task crashed. So far, it is still running. 7/2/2006 3:55:28 PM\|rosetta@home\|Starting task FRA_t338_CASP7_hom001_6_IGNORE_THE_REST_t338_6_1vin___1605.pdb_862_7_0 using rosetta version 525 ID: 19709 · Rating: 0 · rate: / Reply Quote

cmds Send message Joined: 29 Jun 06 Posts: 13 Credit: 41,811 RAC: 0	Message 19714 - Posted: 2 Jul 2006, 21:22:13 UTC - in response to Message 19709. Last modified: 2 Jul 2006, 21:28:22 UTC This task crashed about 1 minute 30 seconds in - - My Pentium 4 with WInXP crashed after 25 seconds, activated HT, so 2 WUs were killed. Example: https://boinc.bakerlab.org/rosetta/result.php?resultid=26791193 This Wu also a 329 works fine for now 90 Min on a Linux-Host https://boinc.bakerlab.org/rosetta/workunit.php?wuid=22790026 https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=266145 Chris ID: 19714 · Rating: 0 · rate: / Reply Quote

Dimitris Hatzopoulos Send message Joined: 5 Jan 06 Posts: 336 Credit: 80,939 RAC: 0	Message 19716 - Posted: 2 Jul 2006, 21:28:22 UTC Last modified: 2 Jul 2006, 21:29:14 UTC I also had FRA_t329* WU crash on WinXP. Perhaps the project should delete them from the queue? Best UFO Resources Wikipedia R@h How-To: Join Distributed Computing projects that benefit humanity ID: 19716 · Rating: 0 · rate: / Reply Quote

Bin Qian Send message Joined: 13 Jul 05 Posts: 33 Credit: 36,897 RAC: 0	Message 19719 - Posted: 2 Jul 2006, 23:05:40 UTC - in response to Message 19716. Thanks for reporting this error! The jobs have been deleted from the queue, but if you still got those queued up on your system, please feel free to delete them. Sorry! About a third of the 1000 starting structures were not recognized by the rosetta application for this WU. When that happened, Rosetta will finish within a couple of minutes of starting. Since no .out.gz result file was produced, boinc reports a "file not found" error. Apparently those bad starting structures were not included in our ralph test of this WU where only a samll subset of the starting structures were used. We will remove the bad starting structures and resend the jobs. Thanks again for reporting this! I also had FRA_t329* WU crash on WinXP. Perhaps the project should delete them from the queue? ID: 19719 · Rating: 0 · rate: / Reply Quote