Graphics do not work with linux version of rosetta beta.

Message boards : Number crunching : Graphics do not work with linux version of rosetta beta.

To post messages, you must log in.

AuthorMessage
kotenok2000
Avatar

Send message
Joined: 22 Feb 11
Posts: 259
Credit: 484,884
RAC: 193
Message 109109 - Posted: 13 Apr 2024, 0:25:04 UTC

Graphics do not work with linux version of rosetta beta.

When i start graphical app it immediately closes and outputs this in stderrgfx.txt:

cat /var/lib/boinc/slots/6/stderrgfx.txt

ERROR: Unable to open file: /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/../database/chemical/residue_type_sets/fa_standard/residue_types.txt

ERROR:: Exit from: src/core/chemical/GlobalResidueTypeSet.cc line: 145
23:25:39 (68987): called boinc_finish(0)


It should look for database at /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database , not /var/lib/boinc/projects/database
ID: 109109 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
kotenok2000
Avatar

Send message
Joined: 22 Feb 11
Posts: 259
Credit: 484,884
RAC: 193
Message 109110 - Posted: 13 Apr 2024, 16:07:57 UTC

It works if i run graphical app manually with manually specified database path
user@ubuntutheoryvm:/var/lib/boinc/slots/6$ ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/
Starting graphics..
core.init: Checking for fconfig files in pwd and ./rosetta/flags 
core.init: Rosetta version: 2023.36.post.dev+5.master.76e2f63f750 76e2f63f750b32d50338385a5e1d99ecb36da226 git@github.com:RosettaCommons/main.git 2023-09-11T11:01:30
core.init: command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_graphics_6.05_x86_64-pc-linux-gnu -database /var/lib/boinc/projects/boinc.bakerlab.org_rosetta/database_0f7f01a1b07/database/
basic.random.init_random_generator: 'RNG device' seed mode, using '/dev/urandom', seed=935815675 seed_offset=0 real_seed=935815675
basic.random.init_random_generator: RandomGenerator:init: Normal mode, seed=935815675 RG_type=mt19937
Opened semaphore
Attached shared memory segment 
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set.  Created 985 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 0.971783 seconds.
ID: 109110 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Message boards : Number crunching : Graphics do not work with linux version of rosetta beta.



©2024 University of Washington
https://www.bakerlab.org