Miscellaneous Work Unit Errors Version 5.01

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Jose

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Message 14322 - Posted: 22 Apr 2006, 0:21:15 UTC

Another One down the tubes. I am going to let all the Wu's left ( I am not accepting new work) to run their course and then will probably remove myself from the project unless I get a satisfactory answer , THAT I CAN UNDERSTAND ( I am not shouting ) Let's say I am not too keen on inefficiency and my cup is running over.



https://boinc.bakerlab.org/rosetta/result.php?resultid=17838237


Result ID 17838237
Name PROD_ABINITIO_1tul__447_47755_0
Workunit 14678351
Created 21 Apr 2006 13:36:17 UTC
Sent 21 Apr 2006 19:59:11 UTC
Received 22 Apr 2006 0:10:46 UTC
Server state Over
Outcome Client error
Client state Computing
Exit status -1073741795 (0xc000001d)
Computer ID 198415
Report deadline 5 May 2006 19:59:11 UTC
CPU time 6490.34375
stderr out <core_client_version>5.2.13</core_client_version>
<message> - exit code -1073741795 (0xc000001d)
</message>
<stderr_txt>
# random seed: 3092306
# cpu_run_time_pref: 21600
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126


BOINC Windows Runtime Debugger Version 5.5.0




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Message 14324 - Posted: 22 Apr 2006, 0:33:39 UTC - in response to Message 14304.  

Dimitris, I think you're right about this being an infinite loop. We're really glad you posted. Bin just tracked down a potential cause of this problem. Please abort this workunit. I'm canceling these workunits (they are a tiny fraction of the current queued jobs, so hopefully won't they won't tie up too many more machines).

I see, but I think it's in a endless loop, because

1/ It has "switched" from Full-atom-relax Model 1 / Step 34k+, back to Ab-initio and Model 1 / Step 1 in front of my eyes (I enabled the graphics to monitor it for a while). In the past it was always Ab-initio -> Full-atom-relax -> done this model, process next Model, right?

Oddly, the WU graphics show several (~14) red-dots (energy min), which afaik should mean that at least 14 Models were processed. But Model # remains at 1.

2/ It's been running for 15.5hr already (my time setting is 8hr/WU) on a P4 CPU which has never exceeded 4hr/model in the past.

Dimitris, thanks for posting. I really wanted to know about these jobs -- they ran beautifully on ralph, but (to be careful) we've only sent out a few here with Rosetta v5.01 to test. It sounds like its running fine -- the 5.1261% complete indicates that Rosetta got past at least one model. Can you let it run? The slow progress may be due to the funny way we calculate % complete; the job may jump to 100% complete after this next model is finished. By the way, in your Rosetta preferences,have you specified a fixed CPU run time (say 8 hours)?



I seem to have a WU which in an "endless loop" which has been running for 15hr 27min sofar

HLBR_1.0_1mky_420_5362, with Rosetta v5.01

right now it's at 5.1261%, Model 1, Step 34312

Everything seems to be in order, i.e. steps incrementing normally, protein chain moving in the graphics etc

But, at some point, it just "resets" and starts over, Model 1 / step 1. Running for 15.5hr already.

This is the 2nd time I encounter an "error" on this PC (WinXP) in 3months, so it's probably a WU issue.

Should I just abort it?




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Profile Dimitris Hatzopoulos

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Message 14325 - Posted: 22 Apr 2006, 0:34:00 UTC - in response to Message 14322.  

Another One down the tubes. I am going to let all the Wu's left ( I am not accepting new work) to run their course and then will probably remove myself from the project unless I get a satisfactory answer , THAT I CAN UNDERSTAND ( I am not shouting ) Let's say I am not too keen on inefficiency and my cup is running over.


This is not "official advice", but if you would just follow my suggestions to install BOINC v5.4.5 (latest devel version) and attach to RALPH, the Rosetta folks will receive (automatically, by the new BOINC sw) MUCH more elaborate bug reports, that would hopefully allow them to track it down.

It'll take less time to take those two simple steps (upgrade BOINC and join RALPH), instead of posting the error results here.

Maybe your PC isn't contributing to the science, but if it can lead to a "cure" of some software incompatibility, it's almost as good.
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Message 14328 - Posted: 22 Apr 2006, 0:40:11 UTC - in response to Message 14313.  

Please abort these jobs. The workunits with the following names appear to be causing problems on some machines:

HBLR_1.0_XXX_ROT_TRIALS_TRIE_449...

Its a bit strange, since we didn't see this problem in our Ralph tests. But just to be safe, go ahead and abort!


I've got the following three work units running at a snails pace but running all the same. Perhaps they are resetting themselves as above, don't know as this is the first time I've looked at them. An Athlon64 3200+ and Sempron 3300+ running FC4 2.6.15-1.1831_FC4 and Sempron 2500+ running Mandrake linux 2.6.9-1.667. They are respectively running 19 hours 32 minutes at 38.52 percent done, 16 hours 50 minutes at 7.83 percent and 17 hours 31 minutes at 3.96 percent. All on 5.01
boinc.bakerlab.org/rosetta/result.php?resultid=17756250
boinc.bakerlab.org/rosetta/result.php?resultid=17794722
boinc.bakerlab.org/rosetta/result.php?resultid=17766055


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Message 14329 - Posted: 22 Apr 2006, 0:45:31 UTC - in response to Message 14322.  

Jose, this is interesting. At present, we can't understand what's going on either! We've seen your error a few times on different machines, but yours is the first case where we see it for nearly every job. I think Dimitris' advice is good. You'd help us a LOT if you attached your project to Ralph ... we'd get a bunch of nice error reports (since your client is frequently causing the same error) and hopefully that will give us enough info to solve this problem.

Another One down the tubes. I am going to let all the Wu's left ( I am not accepting new work) to run their course and then will probably remove myself from the project unless I get a satisfactory answer , THAT I CAN UNDERSTAND ( I am not shouting ) Let's say I am not too keen on inefficiency and my cup is running over.



https://boinc.bakerlab.org/rosetta/result.php?resultid=17838237


Result ID 17838237
Name PROD_ABINITIO_1tul__447_47755_0
Workunit 14678351
Created 21 Apr 2006 13:36:17 UTC
Sent 21 Apr 2006 19:59:11 UTC
Received 22 Apr 2006 0:10:46 UTC
Server state Over
Outcome Client error
Client state Computing
Exit status -1073741795 (0xc000001d)
Computer ID 198415
Report deadline 5 May 2006 19:59:11 UTC
CPU time 6490.34375
stderr out <core_client_version>5.2.13</core_client_version>
<message> - exit code -1073741795 (0xc000001d)
</message>
<stderr_txt>
# random seed: 3092306
# cpu_run_time_pref: 21600
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126


BOINC Windows Runtime Debugger Version 5.5.0





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Message 14331 - Posted: 22 Apr 2006, 1:48:58 UTC - in response to Message 14329.  

Oh look, it's the weekend again. Imagine that a new version released on Friday and problems right away. How many times do you need to be hit over the head before you guys learn :-) :-) Talk about gluttons for punishment!!
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Message 14332 - Posted: 22 Apr 2006, 2:04:42 UTC - in response to Message 14331.  

Yea, that's a good point about the weekend. Give us a little credit, though -- we released the app on a Thursday, which is better than some of our previous disastrous Friday night rosetta@home releases! If you're interested, I'm about to release the next build (5.02)-- with the watchdog thread -- on ralph. If our timing is right, we could release the next app *early* next week, rather than later!
Oh look, it's the weekend again. Imagine that a new version released on Friday and problems right away. How many times do you need to be hit over the head before you guys learn :-) :-) Talk about gluttons for punishment!!


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Message 14333 - Posted: 22 Apr 2006, 2:07:01 UTC - in response to Message 14331.  

Oh look, it's the weekend again. Imagine that a new version released on Friday and problems right away. How many times do you need to be hit over the head before you guys learn :-) :-) Talk about gluttons for punishment!!

I see your smilies. But to be fair... they tested it on Ralph, and released it Thursday night... problem is, if you have a backlog or other projects to run, you may not get any new WUs for a few days from when they release it. So, Mondays would be the best time to release new code. Gives the maximum number of weekdays for experience and results to come in.

Jose, I'm not clear how they plan to get you any WUs from Ralph. They seem to get downloaded just as fast as they are put out there.

Rhiju, why not just have him download the
rosetta_5.01_windows_intelx86.pdb file?? Doesn't that give you the diagnostics you need? And it wouldn't disturb the rest of the environment.
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Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might!
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Message 14334 - Posted: 22 Apr 2006, 2:21:07 UTC - in response to Message 14333.  

Jose, the advice from Feet1st seems reasonable. If you decide not to join Ralph, please do get the pdb file that is linked below.

As for Ralph, based on Feet1st's comments, I'll make sure to send out more work tonight!

Oh look, it's the weekend again. Imagine that a new version released on Friday and problems right away. How many times do you need to be hit over the head before you guys learn :-) :-) Talk about gluttons for punishment!!

I see your smilies. But to be fair... they tested it on Ralph, and released it Thursday night... problem is, if you have a backlog or other projects to run, you may not get any new WUs for a few days from when they release it. So, Mondays would be the best time to release new code. Gives the maximum number of weekdays for experience and results to come in.

Jose, I'm not clear how they plan to get you any WUs from Ralph. They seem to get downloaded just as fast as they are put out there.

Rhiju, why not just have him download the
rosetta_5.01_windows_intelx86.pdb file?? Doesn't that give you the diagnostics you need? And it wouldn't disturb the rest of the environment.


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Message 14336 - Posted: 22 Apr 2006, 2:43:28 UTC - in response to Message 14317.  
Last modified: 22 Apr 2006, 2:46:42 UTC

Jose Wrote -

...Although I belong to a team known for overclocking , I have not done a thing to my computer that can be considered overclocking. I basically know how to turn the computer on and off. You should see my face when I try to understand the messages regarding overclocking, benchmarks and floating decimal points , etc that are posted in my Team's Message Board...




Jose,

Where did your BOINC software come from? Did you get it from your team or directly from the BOINC download page?

If you got it from your team page, it is possible that it is modified in such a way that it is causing you errors. You really should consider installing BOINC Version 5.4.x. You can find the installer here. After you do that you will still be attached to the Rosetta project. You could then either de-attach from Rosetta and connect to the Ralph project, where they can solve this problem, or run both..

It may be that installing a fresh version of BOINC could solve the problem outright, but if not the project could diagnose it better.

You can run both projects on the same system, most people do.

In any case the errors you are having ARE contributing significantly to the project. I am certain They will grant you credits for the failed work units. So while this may be frustrating for you, right now you are producing some very important results. The project needs your data.

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Jose

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Message 14365 - Posted: 22 Apr 2006, 10:48:00 UTC - in response to Message 14334.  

Warning: This one is a tad long. Rhiju at the end there is a very important question for you . Also look in the middle for another red message: I got at least one good piece of news :).

[quote]Jose, the advice from Feet1st seems reasonable. If you decide not to join Ralph, please do get the pdb file that is linked below.

Rhiju:
When I aborted the first batch of nasty 5.01 work units , I told you that I was s going to get a second batch and set it up not to receive more Wu's until ALL the Wu's in that batch were processed and that I was going to report back to you on the final status of each WU.

My reasoning was (and is still) that by checking the error reports you were going to find a common thread ( for example type of WU, size of WU, etc) . [ Note: As of now, the only commonality that has been found is the type of error: all the erroneous Wu's of that batch regardless of type and size have reported the same error. ]Finding the common thread for the error, then you and the other scientists could find ways to solve them and provide answers and suggestions to us .

Call me obtuse , hard headed or plain ornery ( Please be gentle I am a tad sensitive LOL LOL LOL ) but until ALL the units in this batch are processed, I WONT change anything that may alter the computing environment/conditions under which the whole batch is processed.

In order for a complete/reliable analysis of how the full batch was processed all the units in the batch have to be run under the same conditions: adding/subtracting environmental variables can make the findings of a comparative analysis of the units of batch that is being analysed specious. Chances are very high that if there is an error reported in any of the additional Wu's it is going to be the same that has been reported BUT what if NOT? So let's see if there is any other nasty little surprise lurking in those other units.

But more important: I think it is important to see if in that batch of nasty Wu's are units that can be completed successfully as that would allow you and the others to compare the Wu's that ran successfully with the ones that failed and check for differences that may lead to an understanding of why some failed and some were successes without adding into the analysis the issue that I changed "horses in the middle of the stream" ( that I changed the way my computer was operating during the computational processes.

Guess what?!!! the last unit from the batch that has been processed was completed (insert happy emotie here) wo error ( dancing , dancing). So I am very happy to report this unit to you:

https://boinc.bakerlab.org/rosetta/result.php?resultid=17838238

Would you and the team check it and see what separates/differentiated it from all those nasty companions that came with it in the batch? That could give a clue as to what has been happening with the first and second batch of Wu's I got.


What the heck!!!! I have become for a while a guinea pig ( at 390 pounds a big guinea pig) . So let me finish the batch wo making any changes to the computational environment. I may even get more successes (I can dream, cannot I? ) Then after the whole batch is done. I will revisit the suggestions made as to they way I am running Rosetta in my computer.

Be warned : As the self proclaimed "Official Rosetta Guinea Pig" I reserve for myself the rights to some ARGHS every now and then.

Rhiju, since this thread is one for reporting errors. Is there another way I can report to you ( as I previously promised I was going to do ) any other successful Wu's in the batch?


This and no other is the root from which a Tyrant springs; when he first appears he is a protector.”
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Message 14366 - Posted: 22 Apr 2006, 11:59:04 UTC - in response to Message 14336.  

If memory doesn't fail me I got from the BOINC Download page? I am almost sure. Don't take my word for it... I tend to forget things fast. Right now, I am trying to remember where I placed my eyeglasses ( I think I use eyeglasses...LOL LOL )

Please do read Message 14365. The one where I explain to Rhiju why I am going to let the batch that is currently running, run wo changes into my computer environment. It will help you to understand why I am doing it.

Cordially

Jose [Who at least today had a good ,complete WU to report and who is facing the near orgasmic possibility that a Second Unit in a row will be completed wo error (insert happy dancing emotie here)]

This and no other is the root from which a Tyrant springs; when he first appears he is a protector.”
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Message 14367 - Posted: 22 Apr 2006, 12:22:42 UTC - in response to Message 14333.  


I see your smilies. But to be fair... they tested it on Ralph, and released it Thursday night... problem is, if you have a backlog or other projects to run, you may not get any new WUs for a few days from when they release it. So, Mondays would be the best time to release new code. Gives the maximum number of weekdays for experience and results to come in.


Yeah, it was a lame attempt at humour but it did feel a little like we were getting stuck in a loop as well, ours being weekends ;-) I did abort the three long runners that I had reported earlier and things have been running fine since.
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Message 14369 - Posted: 22 Apr 2006, 12:42:46 UTC - in response to Message 14366.  
Last modified: 22 Apr 2006, 12:46:31 UTC


Jose [Who at least today had a good ,complete WU to report and who is facing the near orgasmic possibility that a Second Unit in a row will be completed wo error (insert happy dancing emotie here)]


Be still my heart!!!! Guess What?!!!: the second consecutive unit came in through wo errors
https://boinc.bakerlab.org/rosetta/result.php?resultid=17838239


Could it be that after a rough patch of nasties...all the nasties were weeded out and the batch I got is starting to process the good seed?

BTW I have noticed something that may or not be significant: All the nasty Wu's when they were downloaded ( as a matter of fact ALL the unit in the batch )had times "To Completion" more than 10 hours long which was higher than the estimated I had placed in my preferences ( I had placed 10 ). The first WU that I reported from this batch as completed wo errors and this one I am reporting now had times "To Completion" of less than 10. I just looked at my work batch thingie (pardon the technical jargon) in my BOINC Manager and now all the remaining Wu's are reporting "To completion" times less than when they were originally sent to me: All of them less than 10 ( to be exact all are now reporting 09:20:02)

I don't know how that happened, but it happened and after it happened..the Wu's are working fine. Watch me jinx the rest. LOL LOL LOL

Let's see what happens during the rest of the day.

Sign me a Happy for now Jose.

This and no other is the root from which a Tyrant springs; when he first appears he is a protector.”
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Message 14374 - Posted: 22 Apr 2006, 13:45:54 UTC
Last modified: 22 Apr 2006, 13:46:35 UTC

What should I do with this one?
1.6% 17:30:00 hours of crunching, but still very active with the graphics.
If it's no error or stuck WU I don't matter that it takes his time :)

http://members.lycos.nl/oldbutnotsowise/fora/rosetta_wu.png

(sorry for the crossposting.)
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Message 14375 - Posted: 22 Apr 2006, 13:50:46 UTC - in response to Message 14374.  
Last modified: 22 Apr 2006, 13:51:57 UTC

What should I do with this one?
1.6% 17:30:00 hours of crunching, but still very active with the graphics.
If it's no error or stuck WU I don't matter that it takes his time :)

http://members.lycos.nl/oldbutnotsowise/fora/rosetta_wu.png

(sorry for the crossposting.)


What type of WU is it? If they are FACONTACTS_RECENTER jobs and/or HBLR1.0 jobs you can well abort them Rhiju asked for them to be aborted in another post.



This and no other is the root from which a Tyrant springs; when he first appears he is a protector.”
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Message 14376 - Posted: 22 Apr 2006, 14:27:55 UTC

It's indeed a FACONTACTS_RECENTER job.

I've read that post, but on the other hand, if it's not completely useless to let it run (for days ?), it's oke for me.
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Message 14377 - Posted: 22 Apr 2006, 14:38:02 UTC - in response to Message 14369.  
Last modified: 22 Apr 2006, 14:40:29 UTC

...Let's see what happens during the rest of the day.

Sign me a Happy for now Jose.


Jose,

Most of us who posted questions/suggestions were trying to help you before your frustrations lead you to give up. Your approach to diagnosing the problem is right on target and VERY helpful. Most people are not willing to become a "Guinea pig" (large or small) and they quit before they can get help. So long as you are willing just keep going and follow the guidance you get from Rhiju.

I should also mention there are a large number of people interested in the outcome of this so please do keep this thread informed. If it gets too long I will make a new one.

Thank you for your tolerance and help.

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Message 14398 - Posted: 22 Apr 2006, 17:49:39 UTC - in response to Message 14328.  

Please abort these jobs. The workunits with the following names appear to be causing problems on some machines:

HBLR_1.0_XXX_ROT_TRIALS_TRIE_449...


I got one of these, and it was clearly stuck in the same loop that others have reported. I aborted it and it was promptly sent out to the next victim. Whatever you did to keep it from being resent didn't work.

HBLR_1.0_1hz6_ROT_TRIALS_TRIE_449_8
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Message 14413 - Posted: 22 Apr 2006, 21:20:08 UTC - in response to Message 14377.  
Last modified: 22 Apr 2006, 21:31:08 UTC




I should also mention there are a large number of people interested in the outcome of this so please do keep this thread informed. If it gets too long I will make a new one.

Thank you for your tolerance and help.


Well it seems that the "Wu's from hell" have been exorcised from the Batch.

I am happy to Report that a third unit today was completed without error. That is the third in a row. (Insert very Happy Dancing Emotie)

https://boinc.bakerlab.org/rosetta/result.php?resultid=17838240

when I reported the second WU that was completed without error, I mentioned the fact that all the remaining Wu's in the batch were reporting a "Termination Time" of 09:20:02 instead of the original "Termination time of more than 10 with which they were downloaded. When I checked the remaining 7 Wu's still left in the batch now, the "Termination Time" they are now reporting is even lower than the 09:20:02 I reported in the last thread : The units are now reporting a "Termination Time" of 09:00:04

So I ask was the reduction in Termination Time I have been noticing with the successful processing of each of remaining Wu's in the batch expected ? Is it normal??


Status as of 5:23 PM AST April 22:

7 Wu's left in the Batch of those one is being executed right now (CPU time about 1;20 for about 27% completion an an estimated termination time of 6:13) and 6 units ready to run. Let's see what happens with them.

Note: The graphics are showing a lot of movement and a lot of the "little dots" showing up all over the graph area. ( again, excuse my use of extremely technical jargon). The images do give the impression of faster processing. And before I am told that the screen saver slows down the computation time , please be advised that given the sorry state of TV in America, the Rosetta @ Home Screen Saver is the oly show in town in my household. ( LOL LOL LOL )




This and no other is the root from which a Tyrant springs; when he first appears he is a protector.”
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