Boinc/Rosetta crashing in debian stretch

Questions and Answers : Unix/Linux : Boinc/Rosetta crashing in debian stretch

To post messages, you must log in.

AuthorMessage
sinusoidal

Send message
Joined: 17 Mar 20
Posts: 1
Credit: 773,532
RAC: 5,902
Message 92129 - Posted: 22 Mar 2020, 16:23:40 UTC

Anyone else seen this before? After several hours of working fine, suddenly all of my rosetta instances go <defunct> and no new work occurs (on debian stretch). Same thing is happening on two different machines with the same debian installs.

$ ps aux | grep boinc
root 6825 0.0 0.0 52968 3280 pts/25 S Mar21 0:00 su boinc
boinc 6826 0.0 0.0 21168 4960 pts/25 S+ Mar21 0:00 bash
boinc 6830 0.0 0.1 433732 16628 pts/25 Sl Mar21 0:08 /usr/bin/boinc
boinc 7243 33.8 0.0 0 0 pts/25 ZN Mar21 478:00 [rosetta_4.08_x8] <defunct>
boinc 7246 33.2 0.0 0 0 pts/25 ZN Mar21 469:25 [rosetta_4.08_x8] <defunct>
boinc 7248 30.0 0.0 0 0 pts/25 ZN Mar21 424:39 [rosetta_4.08_x8] <defunct>
root 14266 0.0 0.0 12780 1012 pts/23 S+ 16:20 0:00 grep boinc

Nothing untoward in the logs, it's as if everything just stops. I even ran it interactively and nothing comes up;

21-Mar-2020 16:47:08 [---] OS: Linux: 4.9.0-11-amd64
21-Mar-2020 16:47:08 [---] Memory: 15.58 GB physical, 7.45 GB virtual
21-Mar-2020 16:47:08 [---] Disk: 19.87 GB total, 16.29 GB free
21-Mar-2020 16:47:08 [---] Local time is UTC +0 hours
21-Mar-2020 16:47:08 [---] VirtualBox version: 5.2.38r136252
21-Mar-2020 16:47:08 [---] Config: GUI RPCs allowed from:
21-Mar-2020 16:47:08 [---] 10.10.22.10
21-Mar-2020 16:47:08 [Rosetta@home] URL https://boinc.bakerlab.org/rosetta/; Computer ID 3825818; resource share 100
21-Mar-2020 16:47:08 [---] No general preferences found - using defaults
21-Mar-2020 16:47:08 [---] Reading preferences override file
21-Mar-2020 16:47:08 [---] Preferences:
21-Mar-2020 16:47:08 [---] max memory usage when active: 7977.12MB
21-Mar-2020 16:47:08 [---] max memory usage when idle: 14358.81MB
21-Mar-2020 16:47:08 [---] max disk usage: 17.88GB
21-Mar-2020 16:47:08 [---] don't use GPU while active
21-Mar-2020 16:47:08 [---] (to change preferences, visit a project web site or select Preferences in the Manager)
21-Mar-2020 16:47:08 [---] gui_rpc_auth.cfg is empty - no GUI RPC password protection
21-Mar-2020 16:47:08 Initialization completed
21-Mar-2020 16:47:08 [Rosetta@home] Started upload of 10v3nmgb_c1965_10mer_gb_000547_SAVE_ALL_OUT_897218_301_0_r761872484_0
21-Mar-2020 16:47:08 [Rosetta@home] Started upload of 5zz2mv6l_3h3_design2_COVID-19_SAVE_ALL_OUT_902695_1_0_r558456727_0
21-Mar-2020 16:47:16 [Rosetta@home] Fetching scheduler list


Anything I can look at to determine what is going wrong if nothing showing up in the logs?
ID: 92129 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Questions and Answers : Unix/Linux : Boinc/Rosetta crashing in debian stretch



©2020 University of Washington
https://www.bakerlab.org