Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content

Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content

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Francesco Zippo

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Message 94715 - Posted: 17 Apr 2020, 23:04:28 UTC - in response to Message 94711.  

Fistly, there are slots only when tasks are running.
Secondly, stderrgfx.txt files are created when you launch graphics application.


I tried opening boinc and all of the stuff you said, but still the slots folder is empty. I really cannot understand what's going on: what am I missing?
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sspseudoo

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Message 94796 - Posted: 18 Apr 2020, 20:14:47 UTC - in response to Message 94715.  

In my case the folder "slots" is in my home directory. Maybe the folder is defined during installation. In my case Rosetta 4.15 works with graphics and so the file /slots/0/stderrgfx.txt is empty.

I had to install a few packages (also 32 bit packages although 64 bit OS) in order to get the graphics work, but forgot which packages. Maybe try packages that are recommended here (of course use maybe different package names on different linux distributions):

https://wiki.archlinux.org/index.php/BOINC
(Considerations when choosing a project -> Running on Arch64 -> To show graphics (e.g. Several projects of WCG, Climateprediction, Quake-Catcher Network)

https://boinc.berkeley.edu/forum_thread.php?id=10704

Do you have error messages in the cmd terminal when you click "show graphics"?
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Lockywolf

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Message 96200 - Posted: 7 May 2020, 6:43:05 UTC

I have this problem too.

The slots/0:

command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu -abi
      1 nitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers.index -in:file:native 00001.pdb -sil
      1 ent_gz 1 -frag9 00001.200.9mers.index -out:file:silent default.out -ex1 1 -abinitio::rsd
      1 _wt_loop 0.5 -relax::default_repeats 5 -abinitio::use_filters false -abinitio::increase_
      1 cycles 10 -abinitio::rsd_wt_helix 0.5 -beta 1 -abinitio::rg_reweight 0.5 -in:file:boinc_
      1 wu_zip r3x_5921_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 1000
      1 0 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 5000 -checkpoint_interval 120 -databa
      1 se minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::r
      1 ng mt19937 -constant_seed -jran 3628994
      2 Using database: database_357d5d93529_n_methyl/minirosetta_database
      3 00:48:26 (15638): Can't acquire lockfile (-154) - waiting 35s
      4 00:49:01 (15638): Can't acquire lockfile (-154) - exiting
 << skipped similar>>

*** Error in `../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu
    123 ': free(): invalid pointer: 0x00000000067bd783 ***
<< skipped similar >>


slots/1,2,3 more or less similar
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Mod.Sense
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Message 96366 - Posted: 11 May 2020, 14:36:12 UTC - in response to Message 96200.  

This thread is about problems when showing the graphic for a task. The error you show does not look like the program that is used to show the graphic. So I believe you are having some different issue. Please describe it further in a new thread. Do you have any work running now? How many of those 35 second waits do you have? Any recent changes to your BOINC version or system in general?
Rosetta Moderator: Mod.Sense
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spod

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Message 96639 - Posted: 20 May 2020, 0:28:25 UTC - in response to Message 94004.  

Blank graphics on linux...

Would you add the boinc group to your userid and try the graphics. You might have to log out as well.

The command should be something like sudo usermod -aG boinc

Stuart
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Geralt

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Message 99209 - Posted: 1 Oct 2020, 8:25:11 UTC

Hi guys, same issue here. Ubuntu 20.04 LTS. Graphics is totally blank with just the outlines. I have already added my user to the boinc group. Any help is appreciated
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Questions and Answers : Unix/Linux : Minirosetta graphics work, regular Rosetta graphics window is empty of 3D content



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