Can't run rosetta mini, reports “minirosetta_database.zip does not exist”

Questions and Answers : Unix/Linux : Can't run rosetta mini, reports “minirosetta_database.zip does not exist”

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barius

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Message 90504 - Posted: 11 Mar 2019, 6:30:51 UTC

I have access to a remote Centos 7 server which have Dual Intel 4114 CPU.
When I ran rosetta I noticed all rosetta mini tasks failed in ~3 seconds.
Looking into the logs I found a file named minirosetta_database.zip cannot be found by the program.
This file is just under the task directory, e.g. slots/10, but with 107bytes in size.
The error log is attached below:

···
<core_client_version>7.2.42</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
[2019- 3-10 13:31:39:] :: BOINC:: Initializing ... ok.
[2019- 3-10 13:31:39:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
command: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_3.78_x86_64-pc-linux-gnu -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers -in:file:native 00001.pdb -silent_gz 1 -frag9 00001.200.9mers -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 5 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -beta 1 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip 3gb1_azido2_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2961870
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 195
[0xdc5adaa]
[0x8056003]
[0xdf0cfd8]
[0x8048131]
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>
···
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Questions and Answers : Unix/Linux : Can't run rosetta mini, reports “minirosetta_database.zip does not exist”



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