Rosetta 4.1+ and 4.2+

Message boards : Number crunching : Rosetta 4.1+ and 4.2+

To post messages, you must log in.

Previous · 1 · 2 · 3 · 4 · 5 · 6 · 7 · 8 . . . 31 · Next

AuthorMessage
Profile nastasache

Send message
Joined: 24 Feb 07
Posts: 16
Credit: 171,383
RAC: 0
Message 93524 - Posted: 5 Apr 2020, 17:31:33 UTC - in response to Message 93520.  

Joined.
ID: 93524 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Robinski

Send message
Joined: 23 Mar 20
Posts: 1
Credit: 201,734
RAC: 0
Message 93527 - Posted: 5 Apr 2020, 17:44:37 UTC - in response to Message 93512.  

Can people please join Ralph@home http://ralph.bakerlab.org/. I'm trying to test an updated build which may fix the OSX issue but there are not enough active participants. This application update includes some code related to COVID-19 that we'd like to push out to R@h.

Thanks


I was already inn, but it's Windows
ID: 93527 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [AF>Le_Pommier>MacBidouille.com]Prof
Avatar

Send message
Joined: 26 Jun 07
Posts: 3
Credit: 5,871,723
RAC: 1
Message 93565 - Posted: 5 Apr 2020, 21:52:35 UTC

Hi!
I've join ralph now with a Mac Pro 4,1 & macOs 10.11.6
But no tasks at the moment...
ID: 93565 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile yoerik
Avatar

Send message
Joined: 24 Mar 20
Posts: 128
Credit: 154,607
RAC: 292
Message 93567 - Posted: 5 Apr 2020, 22:04:23 UTC - in response to Message 93565.  
Last modified: 5 Apr 2020, 22:04:39 UTC

Hi!
I've join ralph now with a Mac Pro 4,1 & macOs 10.11.6
But no tasks at the moment...


They'll come. Just be patient.
ID: 93567 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Helix Von Smelix

Send message
Joined: 16 Oct 05
Posts: 12
Credit: 3,625,495
RAC: 19
Message 93569 - Posted: 5 Apr 2020, 22:11:33 UTC

Just downloaded hundreds across my machines.
ID: 93569 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Meerb

Send message
Joined: 10 Dec 10
Posts: 3
Credit: 1,814,661
RAC: 3,414
Message 93571 - Posted: 5 Apr 2020, 22:48:37 UTC
Last modified: 5 Apr 2020, 23:35:48 UTC

Joined! However, I am not getting any jobs to test, even though it appears there some ready to go out? Would very much like opportunity to test a few jobs on these machines, to better know if the issue has been resolved.
ID: 93571 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
entity

Send message
Joined: 8 May 18
Posts: 14
Credit: 3,878,532
RAC: 0
Message 93574 - Posted: 5 Apr 2020, 23:19:35 UTC - in response to Message 93571.  

Downloaded 1135 WUs and working through the last 500 right now. All Linux machines with different distributions...
ID: 93574 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Grant (SSSF)

Send message
Joined: 28 Mar 20
Posts: 811
Credit: 7,208,284
RAC: 22,608
Message 93578 - Posted: 5 Apr 2020, 23:49:01 UTC - in response to Message 93571.  
Last modified: 5 Apr 2020, 23:50:04 UTC

Joined! However, I am not getting any jobs to test, even though it appears there some ready to go out?
Unfortunately the update frequency for the Server Status numbers appears to be at least an hour (or more) between updates.
So when it says 0 there might be some there, and when it's says 5,000, there may be none left.
Grant
Darwin NT
ID: 93578 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tom Coradeschi

Send message
Joined: 11 Mar 20
Posts: 10
Credit: 105,271
RAC: 0
Message 93580 - Posted: 5 Apr 2020, 23:56:44 UTC - in response to Message 93512.  

Joined, waiting on WUs. Will keep an eye on it.
ID: 93580 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Tom M

Send message
Joined: 20 Jun 17
Posts: 79
Credit: 2,243,090
RAC: 0
Message 93586 - Posted: 6 Apr 2020, 0:56:50 UTC
Last modified: 6 Apr 2020, 0:57:37 UTC

I am running 4.12 right now. The amount of ram per task is down significantly from where it was (last?) week.

It was north of 1.3+GB most of the time. Now it is south of 1GB most of the time.

Tom
Help, a tagline is missing..... Help, a tagline is......... Help, a........ Hel.....
ID: 93586 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tom Coradeschi

Send message
Joined: 11 Mar 20
Posts: 10
Credit: 105,271
RAC: 0
Message 93601 - Posted: 6 Apr 2020, 4:50:42 UTC - in response to Message 93580.  

4.15 just downloaded and seems to be running just fine on the older Mac CPUs.
ID: 93601 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Poldy

Send message
Joined: 5 Mar 20
Posts: 2
Credit: 523,148
RAC: 0
Message 93603 - Posted: 6 Apr 2020, 6:20:00 UTC

Joined with a MacPro 5,1 2x 6-Core Xeon on High Sierra 10.13.6
ID: 93603 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
koetjesreep

Send message
Joined: 24 Mar 20
Posts: 5
Credit: 495,994
RAC: 0
Message 93611 - Posted: 6 Apr 2020, 7:31:40 UTC
Last modified: 6 Apr 2020, 7:35:12 UTC

Joined on my failing 2103 macbook air, waiting for work.

GenuineIntel Intel(R) Core(TM) i5-4250U CPU @ 1.30GHz [x86 Family 6 Model 69 Stepping 1] (4 processors)
High Sierra (10.13.6)
ID: 93611 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Qazwaplol

Send message
Joined: 24 Mar 20
Posts: 2
Credit: 1,431,165
RAC: 0
Message 93626 - Posted: 6 Apr 2020, 10:37:52 UTC - in response to Message 93364.  

No 4.12 WU works on my Linux Ubuntu System all got the same problem:

Stderr Ausgabe

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.12_i686-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--covid_spike_design_boinc_v1.xml @flags_jhr_cv -in:file:silent 6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.silent -in:file:silent_struct_type binary -silent_gz -mute all -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip 6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.zip @6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937
Starting watchdog...
Watchdog active.
BOINC:: CPU time: 43776.6s, 14400s + 28800s[2020- 4- 4 11:33:34:] :: BOINC
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001
======================================================
DONE :: 1 starting structures 43776.6 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
11:33:34 (18264): called boinc_finish(0)

</stderr_txt>
]]>

I stopped all 4.12 WU's on the Linux system, waiting for a bugfix. Switches this machine to TN-Grid, They have also Workunits special for the Corona problem.



Getting the same here on Linux machines, all tasks stop after 12 hours reporting having done 1 structure.
Where Windows machines do work in half the time and seen anywhere from 100 to 600 structures.
https://boinc.bakerlab.org/rosetta/result.php?resultid=1140424240
https://boinc.bakerlab.org/rosetta/result.php?resultid=1140422743
ID: 93626 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tom Coradeschi

Send message
Joined: 11 Mar 20
Posts: 10
Credit: 105,271
RAC: 0
Message 93627 - Posted: 6 Apr 2020, 11:15:50 UTC

Reset Project - BOINC will download the R@h 4.15 client. Works on older CPUs and appears to be more efficient on the newer ones.
ID: 93627 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Qazwaplol

Send message
Joined: 24 Mar 20
Posts: 2
Credit: 1,431,165
RAC: 0
Message 93629 - Posted: 6 Apr 2020, 12:31:10 UTC

Thanks

Issue appears to be with Rosetta v4.12 i686-pc-linux-gnu
No issues with Rosetta v4.12 x86_64-pc-linux-gnu

After project reset getting the proper 64bit app tasks, where before would almost exclusively get tasks for the potential faulty 32bit app.
ID: 93629 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Blackbird

Send message
Joined: 16 Jan 07
Posts: 5
Credit: 448,035
RAC: 0
Message 93633 - Posted: 6 Apr 2020, 13:18:14 UTC

I am now getting work through rosetta@home and it does not seem to be causing errors.
ID: 93633 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
JohnH

Send message
Joined: 25 Mar 13
Posts: 43
Credit: 2,108,481
RAC: 814
Message 93635 - Posted: 6 Apr 2020, 13:27:46 UTC

Boinc Manager for windows, project tab ->your tasks used to show history for "a week or so". Now only shows me current tasks no history. Is it just me or has something changed? Version 7.14.2 (x64) Widgets 3.0.1
ID: 93635 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Keith Myers
Avatar

Send message
Joined: 29 Mar 20
Posts: 95
Credit: 256,614
RAC: 292
Message 93652 - Posted: 6 Apr 2020, 17:15:43 UTC - in response to Message 93635.  

Your client and manager glitched and you lost your statistics.xml file. Starting a new one. You can change how long you want to keep your history by changing the <save_stats_days>180</save_stats_days> parameter in the cc_config.xml file.
ID: 93652 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
csbyseti

Send message
Joined: 24 Dec 05
Posts: 10
Credit: 3,832,426
RAC: 8
Message 93655 - Posted: 6 Apr 2020, 18:16:54 UTC - in response to Message 93629.  

Thanks

Issue appears to be with Rosetta v4.12 i686-pc-linux-gnu
No issues with Rosetta v4.12 x86_64-pc-linux-gnu

After project reset getting the proper 64bit app tasks, where before would almost exclusively get tasks for the potential faulty 32bit app.


Thanks for this information. Will test it.

Looked at the other machines, all 64-bit machines got the 32 Bit app.

Why is Rosetta delivering 32-Bit apps to 64-bit machines?
ID: 93655 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Previous · 1 · 2 · 3 · 4 · 5 · 6 · 7 · 8 . . . 31 · Next

Message boards : Number crunching : Rosetta 4.1+ and 4.2+



©2021 University of Washington
https://www.bakerlab.org