Rosetta 4.1+ and 4.2+

Author	Message
nastasache Send message Joined: 24 Feb 07 Posts: 16 Credit: 171,383 RAC: 0	Message 93524 - Posted: 5 Apr 2020, 17:31:33 UTC - in response to Message 93520. Joined. ID: 93524 · Rating: 0 · rate: / Reply Quote

Robinski Send message Joined: 23 Mar 20 Posts: 1 Credit: 201,734 RAC: 0	Message 93527 - Posted: 5 Apr 2020, 17:44:37 UTC - in response to Message 93512. Can people please join Ralph@home http://ralph.bakerlab.org/. I'm trying to test an updated build which may fix the OSX issue but there are not enough active participants. This application update includes some code related to COVID-19 that we'd like to push out to R@h. Thanks I was already inn, but it's Windows ID: 93527 · Rating: 0 · rate: / Reply Quote

[AF>Le_Pommier>MacBidouille.com]Prof Send message Joined: 26 Jun 07 Posts: 3 Credit: 5,871,723 RAC: 0	Message 93565 - Posted: 5 Apr 2020, 21:52:35 UTC Hi! I've join ralph now with a Mac Pro 4,1 & macOs 10.11.6 But no tasks at the moment... ID: 93565 · Rating: 0 · rate: / Reply Quote

yoerik Send message Joined: 24 Mar 20 Posts: 128 Credit: 169,525 RAC: 0	Message 93567 - Posted: 5 Apr 2020, 22:04:23 UTC - in response to Message 93565. Last modified: 5 Apr 2020, 22:04:39 UTC Hi! I've join ralph now with a Mac Pro 4,1 & macOs 10.11.6 But no tasks at the moment... They'll come. Just be patient. ID: 93567 · Rating: 0 · rate: / Reply Quote

Helix Von Smelix Send message Joined: 16 Oct 05 Posts: 12 Credit: 4,029,747 RAC: 5	Message 93569 - Posted: 5 Apr 2020, 22:11:33 UTC Just downloaded hundreds across my machines. ID: 93569 · Rating: 0 · rate: / Reply Quote

Meerb Send message Joined: 10 Dec 10 Posts: 3 Credit: 2,925,682 RAC: 0	Message 93571 - Posted: 5 Apr 2020, 22:48:37 UTC Last modified: 5 Apr 2020, 23:35:48 UTC Joined! However, I am not getting any jobs to test, even though it appears there some ready to go out? Would very much like opportunity to test a few jobs on these machines, to better know if the issue has been resolved. ID: 93571 · Rating: 0 · rate: / Reply Quote

entity Send message Joined: 8 May 18 Posts: 19 Credit: 5,902,392 RAC: 5,825	Message 93574 - Posted: 5 Apr 2020, 23:19:35 UTC - in response to Message 93571. Downloaded 1135 WUs and working through the last 500 right now. All Linux machines with different distributions... ID: 93574 · Rating: 0 · rate: / Reply Quote

Grant (SSSF) Send message Joined: 28 Mar 20 Posts: 1677 Credit: 17,773,598 RAC: 22,870	Message 93578 - Posted: 5 Apr 2020, 23:49:01 UTC - in response to Message 93571. Last modified: 5 Apr 2020, 23:50:04 UTC Joined! However, I am not getting any jobs to test, even though it appears there some ready to go out? Unfortunately the update frequency for the Server Status numbers appears to be at least an hour (or more) between updates. So when it says 0 there might be some there, and when it's says 5,000, there may be none left. Grant Darwin NT ID: 93578 · Rating: 0 · rate: / Reply Quote

Tom Coradeschi Send message Joined: 11 Mar 20 Posts: 16 Credit: 123,703 RAC: 0	Message 93580 - Posted: 5 Apr 2020, 23:56:44 UTC - in response to Message 93512. Joined, waiting on WUs. Will keep an eye on it. ID: 93580 · Rating: 0 · rate: / Reply Quote

Tom M Send message Joined: 20 Jun 17 Posts: 87 Credit: 15,044,340 RAC: 48,637	Message 93586 - Posted: 6 Apr 2020, 0:56:50 UTC Last modified: 6 Apr 2020, 0:57:37 UTC I am running 4.12 right now. The amount of ram per task is down significantly from where it was (last?) week. It was north of 1.3+GB most of the time. Now it is south of 1GB most of the time. Tom Help, my tagline is missing..... Help, my tagline is......... Help, m........ Hel..... ID: 93586 · Rating: 0 · rate: / Reply Quote

Tom Coradeschi Send message Joined: 11 Mar 20 Posts: 16 Credit: 123,703 RAC: 0	Message 93601 - Posted: 6 Apr 2020, 4:50:42 UTC - in response to Message 93580. 4.15 just downloaded and seems to be running just fine on the older Mac CPUs. ID: 93601 · Rating: 0 · rate: / Reply Quote

Poldy Send message Joined: 5 Mar 20 Posts: 2 Credit: 523,148 RAC: 0	Message 93603 - Posted: 6 Apr 2020, 6:20:00 UTC Joined with a MacPro 5,1 2x 6-Core Xeon on High Sierra 10.13.6 ID: 93603 · Rating: 0 · rate: / Reply Quote

koetjesreep Send message Joined: 24 Mar 20 Posts: 5 Credit: 495,994 RAC: 0	Message 93611 - Posted: 6 Apr 2020, 7:31:40 UTC Last modified: 6 Apr 2020, 7:35:12 UTC Joined on my failing 2103 macbook air, waiting for work. GenuineIntel Intel(R) Core(TM) i5-4250U CPU @ 1.30GHz [x86 Family 6 Model 69 Stepping 1] (4 processors) High Sierra (10.13.6) ID: 93611 · Rating: 0 · rate: / Reply Quote

Qazwaplol Send message Joined: 24 Mar 20 Posts: 2 Credit: 1,431,165 RAC: 0	Message 93626 - Posted: 6 Apr 2020, 10:37:52 UTC - in response to Message 93364. No 4.12 WU works on my Linux Ubuntu System all got the same problem: Stderr Ausgabe <core_client_version>7.9.3</core_client_version> <![CDATA[ <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.12_i686-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--covid_spike_design_boinc_v1.xml @flags_jhr_cv -in:file:silent 6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.silent -in:file:silent_struct_type binary -silent_gz -mute all -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip 6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.zip @6cp3nh2c_Junior_HalfRoid_vs_COVID-19_design1_dev.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 Starting watchdog... Watchdog active. BOINC:: CPU time: 43776.6s, 14400s + 28800s[2020- 4- 4 11:33:34:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) ----- 0 ----- Stream information inconsistent. Writing W_0000001 ====================================================== DONE :: 1 starting structures 43776.6 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== 11:33:34 (18264): called boinc_finish(0) </stderr_txt> ]]> I stopped all 4.12 WU's on the Linux system, waiting for a bugfix. Switches this machine to TN-Grid, They have also Workunits special for the Corona problem. Getting the same here on Linux machines, all tasks stop after 12 hours reporting having done 1 structure. Where Windows machines do work in half the time and seen anywhere from 100 to 600 structures. https://boinc.bakerlab.org/rosetta/result.php?resultid=1140424240 https://boinc.bakerlab.org/rosetta/result.php?resultid=1140422743 ID: 93626 · Rating: 0 · rate: / Reply Quote

Tom Coradeschi Send message Joined: 11 Mar 20 Posts: 16 Credit: 123,703 RAC: 0	Message 93627 - Posted: 6 Apr 2020, 11:15:50 UTC Reset Project - BOINC will download the R@h 4.15 client. Works on older CPUs and appears to be more efficient on the newer ones. ID: 93627 · Rating: 0 · rate: / Reply Quote

Qazwaplol Send message Joined: 24 Mar 20 Posts: 2 Credit: 1,431,165 RAC: 0	Message 93629 - Posted: 6 Apr 2020, 12:31:10 UTC Thanks Issue appears to be with Rosetta v4.12 i686-pc-linux-gnu No issues with Rosetta v4.12 x86_64-pc-linux-gnu After project reset getting the proper 64bit app tasks, where before would almost exclusively get tasks for the potential faulty 32bit app. ID: 93629 · Rating: 0 · rate: / Reply Quote

Blackbird Send message Joined: 16 Jan 07 Posts: 5 Credit: 733,433 RAC: 715	Message 93633 - Posted: 6 Apr 2020, 13:18:14 UTC I am now getting work through rosetta@home and it does not seem to be causing errors. ID: 93633 · Rating: 0 · rate: / Reply Quote

JohnH Send message Joined: 25 Mar 13 Posts: 43 Credit: 2,319,355 RAC: 0	Message 93635 - Posted: 6 Apr 2020, 13:27:46 UTC Boinc Manager for windows, project tab ->your tasks used to show history for "a week or so". Now only shows me current tasks no history. Is it just me or has something changed? Version 7.14.2 (x64) Widgets 3.0.1 ID: 93635 · Rating: 0 · rate: / Reply Quote

Keith Myers Send message Joined: 29 Mar 20 Posts: 97 Credit: 332,619 RAC: 425	Message 93652 - Posted: 6 Apr 2020, 17:15:43 UTC - in response to Message 93635. Your client and manager glitched and you lost your statistics.xml file. Starting a new one. You can change how long you want to keep your history by changing the <save_stats_days>180</save_stats_days> parameter in the cc_config.xml file. ID: 93652 · Rating: 0 · rate: / Reply Quote

csbyseti Send message Joined: 24 Dec 05 Posts: 11 Credit: 5,004,853 RAC: 13,455	Message 93655 - Posted: 6 Apr 2020, 18:16:54 UTC - in response to Message 93629. Thanks Issue appears to be with Rosetta v4.12 i686-pc-linux-gnu No issues with Rosetta v4.12 x86_64-pc-linux-gnu After project reset getting the proper 64bit app tasks, where before would almost exclusively get tasks for the potential faulty 32bit app. Thanks for this information. Will test it. Looked at the other machines, all 64-bit machines got the 32 Bit app. Why is Rosetta delivering 32-Bit apps to 64-bit machines? ID: 93655 · Rating: 0 · rate: / Reply Quote