Rosetta 4.0+

Message boards : Number crunching : Rosetta 4.0+

To post messages, you must log in.

AuthorMessage
Admin
Project administrator

Send message
Joined: 1 Jul 05
Posts: 4177
Credit: 0
RAC: 0
Message 87456 - Posted: 5 Oct 2017, 17:37:31 UTC

Please post issues/bugs regarding the Rosetta 4.0+ application here.
ID: 87456 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sid Celery

Send message
Joined: 11 Feb 08
Posts: 857
Credit: 11,875,698
RAC: 9,223
Message 87467 - Posted: 8 Oct 2017, 14:04:33 UTC

2 recent errors:

Application version Rosetta v4.03 windows_x86_64
BBGCBeNTF2_24_fold_SAVE_ALL_OUT_516172_1197_0
<core_client_version>7.8.2</core_client_version>
[...]
std::cerr: Exception was thrown:
chi angle must be between -180 and 180: nan


Application version Rosetta v4.04 windows_intelx86
rb_10_06_78089_120672__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_520283_579_0
<core_client_version>7.8.2</core_client_version>
[...]
DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

ERROR: Function not implemented.
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 92
03:36:19 (932): called boinc_finish(0)

ID: 87467 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sid Celery

Send message
Joined: 11 Feb 08
Posts: 857
Credit: 11,875,698
RAC: 9,223
Message 87523 - Posted: 15 Oct 2017, 5:01:39 UTC - in response to Message 87467.  

A few more errors I didn't get a chance to report earlier, only one of which is still showing in my task list

Application version Rosetta v4.04 windows_x86_64
[url=https://boinc.bakerlab.org/result.php?resultid=946640972nme11_v4_cpp_11_D2_v3_SAVE_ALL_OUT_522647_862_0[/url]
std::cerr: Exception was thrown:
Cannot normalize xyzVector of length() zero

ID: 87523 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile Dr. Merkwürdigliebe
Avatar

Send message
Joined: 5 Dec 10
Posts: 79
Credit: 2,657,273
RAC: 5
Message 87526 - Posted: 15 Oct 2017, 18:37:20 UTC

On my Linux x64 - PC BOINC downloads rosetta_4.03_i686-pc-linux-gnu ?





I already got a rosetta_4.03_x86_64-pc-linux-gnu ?



ID: 87526 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
furukitsune

Send message
Joined: 19 Mar 16
Posts: 6
Credit: 1,161,511
RAC: 3,094
Message 87548 - Posted: 20 Oct 2017, 21:19:01 UTC

getting error on v4.04 task that still validates:

https://boinc.bakerlab.org/result.php?resultid=948523506

error: cannot create ./minirosetta_database/scoring/qsar/shape_histogram_data.js
Permission denied

also on ver 3.78

https://boinc.bakerlab.org/result.php?resultid=948507283


https://boinc.bakerlab.org/result.php?resultid=948507315

fk
ID: 87548 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Usuario1_S

Send message
Joined: 24 Mar 14
Posts: 49
Credit: 1,837,723
RAC: 3,530
Message 87578 - Posted: 29 Oct 2017, 6:22:33 UTC

I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version?
ID: 87578 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 634
Credit: 1,829,174
RAC: 2,793
Message 87585 - Posted: 29 Oct 2017, 10:58:57 UTC - in response to Message 87578.  

I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version?


It's a very long beta. The first 4.x was released on Ralph on August...
ID: 87585 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Usuario1_S

Send message
Joined: 24 Mar 14
Posts: 49
Credit: 1,837,723
RAC: 3,530
Message 87614 - Posted: 3 Nov 2017, 18:00:35 UTC - in response to Message 87585.  

OK I'll wait then
ID: 87614 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Sid Celery

Send message
Joined: 11 Feb 08
Posts: 857
Credit: 11,875,698
RAC: 9,223
Message 87642 - Posted: 9 Nov 2017, 0:39:57 UTC - in response to Message 87578.  

I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version?

And I think v3.83 is Android
ID: 87642 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 634
Credit: 1,829,174
RAC: 2,793
Message 87740 - Posted: 24 Nov 2017, 17:14:23 UTC - in response to Message 87642.  

Some 4.06 here on Windows 10. Seems without problems.
ID: 87740 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
jjch

Send message
Joined: 10 Nov 13
Posts: 9
Credit: 213,476,496
RAC: 253,225
Message 87741 - Posted: 24 Nov 2017, 19:53:58 UTC - in response to Message 87740.  
Last modified: 24 Nov 2017, 19:57:27 UTC

Right after I said I wasn't getting any 4.06 tasks I have started seeing a few. It is only a very small amount. Maybe less than 5% of the total. They do seem to be working fine though.

What I'm trying to figure out is why the Rosetta RAC has been dropping so much since about a month ago. These are mostly 3.78 tasks but it is way down from what it used to be.

See this post https://boinc.bakerlab.org/rosetta/forum_thread.php?id=12320
ID: 87741 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 634
Credit: 1,829,174
RAC: 2,793
Message 87843 - Posted: 7 Dec 2017, 11:47:22 UTC

The 4.06 wus seem to be longer than 3.78
My default runtime is 2hs, but these wus run over 6hs...
ID: 87843 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Trotador

Send message
Joined: 30 May 09
Posts: 67
Credit: 49,618,541
RAC: 35,459
Message 87845 - Posted: 7 Dec 2017, 14:17:32 UTC

This post should be here. There are 2 more errors since first report


[quote]several Rosetta 4.06 units failing with this error:

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<message>
process got signal 11
</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.06_x86_64-pc-linux-gnu @9res_cis_hydrophobic_nmethyl_c.103.1_1_0001.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2224394
Starting watchdog...
Watchdog active.
BOINC:: CPU time: 43533.6s, 14400s + 28800s[2017-12- 6 12:16:35:] :: BOINC
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001
======================================================
DONE :: 1 starting structures 43566.1 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
12:06:19 (72653): called boinc_finish(0)

</stderr_txt>
]]>
ID: 87845 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Trotador

Send message
Joined: 30 May 09
Posts: 67
Credit: 49,618,541
RAC: 35,459
Message 87890 - Posted: 12 Dec 2017, 19:51:18 UTC

Errors continue. Linux machines seem more prone to fail than windows's or others.

I'm stopping crunching and will check later.
ID: 87890 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote

Message boards : Number crunching : Rosetta 4.0+



©2017 University of Washington
http://www.bakerlab.org