Rosetta 4.0+

Author	Message
Admin Project administrator Send message Joined: 1 Jul 05 Posts: 4805 Credit: 0 RAC: 0	Message 87456 - Posted: 5 Oct 2017, 17:37:31 UTC Please post issues/bugs regarding the Rosetta 4.0+ application here. ID: 87456 · Rating: 0 · rate: / Reply Quote

Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,184,314 RAC: 9,365	Message 87467 - Posted: 8 Oct 2017, 14:04:33 UTC 2 recent errors: Application version Rosetta v4.03 windows_x86_64 BBGCBeNTF2_24_fold_SAVE_ALL_OUT_516172_1197_0 <core_client_version>7.8.2</core_client_version> [...] std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan Application version Rosetta v4.04 windows_intelx86 rb_10_06_78089_120672__t000__0_C1_SAVE_ALL_OUT_IGNORE_THE_REST_520283_579_0 <core_client_version>7.8.2</core_client_version> [...] DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.) ERROR: Function not implemented. ERROR:: Exit from: ......srcappspublicboincminirosetta.cc line: 92 03:36:19 (932): called boinc_finish(0) ID: 87467 · Rating: 0 · rate: / Reply Quote

Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,184,314 RAC: 9,365	Message 87523 - Posted: 15 Oct 2017, 5:01:39 UTC - in response to Message 87467. A few more errors I didn't get a chance to report earlier, only one of which is still showing in my task list Application version Rosetta v4.04 windows_x86_64 [url=https://boinc.bakerlab.org/result.php?resultid=946640972nme11_v4_cpp_11_D2_v3_SAVE_ALL_OUT_522647_862_0[/url] std::cerr: Exception was thrown: Cannot normalize xyzVector of length() zero ID: 87523 · Rating: 0 · rate: / Reply Quote

Dr. Merkwürdigliebe Send message Joined: 5 Dec 10 Posts: 81 Credit: 2,657,273 RAC: 0	Message 87526 - Posted: 15 Oct 2017, 18:37:20 UTC On my Linux x64 - PC BOINC downloads rosetta_4.03_i686-pc-linux-gnu ? I already got a rosetta_4.03_x86_64-pc-linux-gnu ? ID: 87526 · Rating: 0 · rate: / Reply Quote

furukitsune Send message Joined: 19 Mar 16 Posts: 9 Credit: 7,213,545 RAC: 3,015	Message 87548 - Posted: 20 Oct 2017, 21:19:01 UTC getting error on v4.04 task that still validates: https://boinc.bakerlab.org/result.php?resultid=948523506 error: cannot create ./minirosetta_database/scoring/qsar/shape_histogram_data.js Permission denied also on ver 3.78 https://boinc.bakerlab.org/result.php?resultid=948507283 https://boinc.bakerlab.org/result.php?resultid=948507315 fk ID: 87548 · Rating: 0 · rate: / Reply Quote

Usuario1_S Send message Joined: 24 Mar 14 Posts: 92 Credit: 3,059,705 RAC: 0	Message 87578 - Posted: 29 Oct 2017, 6:22:33 UTC I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version? ID: 87578 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,582,381 RAC: 7,850	Message 87585 - Posted: 29 Oct 2017, 10:58:57 UTC - in response to Message 87578. I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version? It's a very long beta. The first 4.x was released on Ralph on August... ID: 87585 · Rating: 0 · rate: / Reply Quote

Usuario1_S Send message Joined: 24 Mar 14 Posts: 92 Credit: 3,059,705 RAC: 0	Message 87614 - Posted: 3 Nov 2017, 18:00:35 UTC - in response to Message 87585. OK I'll wait then ID: 87614 · Rating: 0 · rate: / Reply Quote

Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,184,314 RAC: 9,365	Message 87642 - Posted: 9 Nov 2017, 0:39:57 UTC - in response to Message 87578. I'm still with PC Windows 3.78, not even 3.83 gets to me, let alone 4.00+, is this a beta version? And I think v3.83 is Android ID: 87642 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,582,381 RAC: 7,850	Message 87740 - Posted: 24 Nov 2017, 17:14:23 UTC - in response to Message 87642. Some 4.06 here on Windows 10. Seems without problems. ID: 87740 · Rating: 0 · rate: / Reply Quote

jjch Send message Joined: 10 Nov 13 Posts: 14 Credit: 440,504,487 RAC: 19,655	Message 87741 - Posted: 24 Nov 2017, 19:53:58 UTC - in response to Message 87740. Last modified: 24 Nov 2017, 19:57:27 UTC Right after I said I wasn't getting any 4.06 tasks I have started seeing a few. It is only a very small amount. Maybe less than 5% of the total. They do seem to be working fine though. What I'm trying to figure out is why the Rosetta RAC has been dropping so much since about a month ago. These are mostly 3.78 tasks but it is way down from what it used to be. See this post https://boinc.bakerlab.org/rosetta/forum_thread.php?id=12320 ID: 87741 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,582,381 RAC: 7,850	Message 87843 - Posted: 7 Dec 2017, 11:47:22 UTC The 4.06 wus seem to be longer than 3.78 My default runtime is 2hs, but these wus run over 6hs... ID: 87843 · Rating: 0 · rate: / Reply Quote

Trotador Send message Joined: 30 May 09 Posts: 108 Credit: 291,214,977 RAC: 1	Message 87845 - Posted: 7 Dec 2017, 14:17:32 UTC This post should be here. There are 2 more errors since first report [quote]several Rosetta 4.06 units failing with this error: <core_client_version>7.6.31</core_client_version> <![CDATA[ <message> process got signal 11 </message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.06_x86_64-pc-linux-gnu @9res_cis_hydrophobic_nmethyl_c.103.1_1_0001.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2224394 Starting watchdog... Watchdog active. BOINC:: CPU time: 43533.6s, 14400s + 28800s[2017-12- 6 12:16:35:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) ----- 0 ----- Stream information inconsistent. Writing W_0000001 ====================================================== DONE :: 1 starting structures 43566.1 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== 12:06:19 (72653): called boinc_finish(0) </stderr_txt> ]]> ID: 87845 · Rating: 0 · rate: / Reply Quote

Trotador Send message Joined: 30 May 09 Posts: 108 Credit: 291,214,977 RAC: 1	Message 87890 - Posted: 12 Dec 2017, 19:51:18 UTC Errors continue. Linux machines seem more prone to fail than windows's or others. I'm stopping crunching and will check later. ID: 87890 · Rating: 0 · rate: / Reply Quote

Luigi R. Send message Joined: 7 Feb 14 Posts: 39 Credit: 2,045,527 RAC: 0	Message 87939 - Posted: 20 Dec 2017, 18:26:22 UTC My target CPU run time is 1 hour. Rosetta application runs for >5 hours. Then it fails. It happened 1 week ago too. It looks no credit will get granted for that. I mean the credit granted after ~24 hours for errors. How can I disable receiving Rosetta workunits? I want Rosetta Mini only. <core_client_version>7.4.22</core_client_version> <![CDATA[ <message> process got signal 11 </message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.06_x86_64-pc-linux-gnu @cp11v3n3_c.293.9_0001_0001_0001_0001.flags -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1894171 Starting watchdog... Watchdog active. BOINC:: CPU time: 18537.5s, 14400s + 3600s[2017-12-20 19:18:14:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) ----- 0 ----- Stream information inconsistent. Writing W_0000001 ====================================================== DONE :: 1 starting structures 18537.5 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== 19:18:14 (10793): called boinc_finish(0) </stderr_txt> ]]> Link to result: https://boinc.bakerlab.org/result.php?resultid=961026207 ID: 87939 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1994 Credit: 9,582,381 RAC: 7,850	Message 88020 - Posted: 5 Jan 2018, 15:16:07 UTC - in response to Message 87526. I already got a rosetta_4.03_x86_64-pc-linux-gnu ? It seems that also on Windows, now, the 4.06 is a 64 bit image and not a wrapper. Is it true?? ID: 88020 · Rating: 0 · rate: / Reply Quote

[AF>Le_Pommier] Jerome_C2005 Send message Joined: 22 Aug 06 Posts: 42 Credit: 1,258,039 RAC: 0	Message 88081 - Posted: 16 Jan 2018, 19:56:31 UTC Hi All Rosetta 4.06 = "process got signal 4" on macOS 10.13.2 + boinc 7.8.4 https://boinc.bakerlab.org/rosetta/results.php?hostid=1665975&offset=0&show_names=0&state=0&appid=2 ID: 88081 · Rating: 0 · rate: / Reply Quote

mmonnin Send message Joined: 2 Jun 16 Posts: 58 Credit: 23,591,462 RAC: 37,436	Message 88083 - Posted: 17 Jan 2018, 0:35:36 UTC Rosetta 4.06 needs to die. So many just run and run until they abort themselves. ID: 88083 · Rating: 0 · rate: / Reply Quote

Sid Celery Send message Joined: 11 Feb 08 Posts: 2122 Credit: 41,184,314 RAC: 9,365	Message 88085 - Posted: 17 Jan 2018, 4:10:23 UTC Boinc 7.8.3 recent Rosetta 4.06 errors PF16908.4_aivan_SAVE_ALL_OUT_03_09_541716_98_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF02107.15_aivan_SAVE_ALL_OUT_03_09_541721_133_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF05100.11_aivan_SAVE_ALL_OUT_03_09_541721_107_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF15956.4_aivan_SAVE_ALL_OUT_03_09_541721_229_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF04854.13_aivan_SAVE_ALL_OUT_03_09_541030_945_1 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF07916.10_aivan_SAVE_ALL_OUT_03_09_541715_248_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF10076.8_aivan_SAVE_ALL_OUT_03_09_541721_427_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF12237.7_aivan_SAVE_ALL_OUT_03_09_541716_450_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF11151.7_aivan_SAVE_ALL_OUT_03_09_541716_366_0 std::cerr: Exception was thrown: chi angle must be between -180 and 180: nan PF12400.7_aivan_SAVE_ALL_OUT_03_09_541716_366_0 (unknown error) - exit code -1073741819 (0xc0000005)</message> <...> Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0000000000000000 ID: 88085 · Rating: 0 · rate: / Reply Quote

Michael G.R. Send message Joined: 11 Nov 05 Posts: 264 Credit: 11,247,510 RAC: 0	Message 88095 - Posted: 17 Jan 2018, 23:02:21 UTC - in response to Message 88085. Version 4.06: Getting "computational error" after 1 second of trying on a Mac Pro, Boinc 7.6.33. Mini 3.78 works fine. ID: 88095 · Rating: 0 · rate: / Reply Quote