Message boards : Number crunching : Rosetta on ARM64 with latest glibc crashes?
Author | Message |
---|---|
CallMeFoxie Send message Joined: 22 Mar 20 Posts: 8 Credit: 152,280 RAC: 0 |
Hi I've built a small closed linux that contains pretty much only glibc and boinc and it seems that Rosetta crashes for no reasonable reason: <stderr_out> <![CDATA[ <message> process exited with code 193 (0xc1, -63)</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_aarch64-unknown-linux-gnu -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers.index -in:file:native 00001.pdb -silent_gz 1 -frag9 00001.200.9mers.index -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 5 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -beta 1 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip enni5406_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 2346184 SIGSEGV: segmentation violation Stack trace (14 frames): [0x74249a4] linux-vdso.so.1(__kernel_rt_sigreturn+0x0)[0xffff97dc67bc] /lib64/libc.so.6(__libc_malloc+0x6c)[0xffff9721b72c] /lib64/libc.so.6(+0x61a28)[0xffff97205a28] /lib64/libc.so.6(__nss_files_fopen+0x18)[0xffff97293a88] /lib64/libnss_files.so.2(_nss_files_getpwuid_r+0x38)[0xffff973e55fc] [0x757f84c] [0x757f5e8] [0x70bb020] [0x49f4ffc] [0x49f7b3c] [0x4061f4] [0x753db74] [0x68cd68] Exiting... </stderr_txt> ]]> </stderr_out> any ideas? This is compiled against glibc 2.32 and gcc 10.2.0. TN-Grid crunches fine. Thanks Ashley |
CallMeFoxie Send message Joined: 22 Mar 20 Posts: 8 Credit: 152,280 RAC: 0 |
Well in an unexpected turn of events adding 32bit armhf glibc + libgcc and upgrading kernel 5.9.1 -> 5.9.5 and the process has been running for over 6 minutes, previously it crashed in 6 seconds... What? :) |
Message boards :
Number crunching :
Rosetta on ARM64 with latest glibc crashes?
©2024 University of Washington
https://www.bakerlab.org