Rosetta@home

Minirosetta 1.82/1.88

  UW Seal
 
[ Home ] [ Join ] [ About ] [ Participants ] [ Community ] [ Statistics ]
  [ login/out ]


Advanced search
Message boards : Number crunching : Minirosetta 1.82/1.88

Sort
AuthorMessage
Mike Tyka

Joined: Oct 20 05
Posts: 96
ID: 5612
Credit: 2,190
RAC: 0
Message 62226 - Posted 14 Jul 2009 17:13:54 UTC

Ok, 1.82 is out. This one has

- Support for Disulfides. New Science!
- Bug fixes for homology modelling with constraints
- SOme bugfixes in the watchdog


Mike

____________
http://beautifulproteins.blogspot.com/
http://www.miketyka.com/

Billy

Joined: May 29 06
Posts: 9
ID: 85245
Credit: 176,341
RAC: 820
Message 62233 - Posted 15 Jul 2009 2:01:50 UTC

Task 1554305

BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _1BG2A_2_00001
BOINC:: CPU time: 18235.1s, 14400s + 3600s[2009- 7-14 19:26:21:] :: BOINC
WARNING! cannot get file size for default.out.gz: could not open file.
Output exists: default.out.gz Size: -1
InternalDecoyCount: 0 (GZ)
-----
0
-----
Stream information inconsistent.
Writing W_0000001

Minirosetta 1.82
____________

googloo
Avatar

Joined: Sep 15 06
Posts: 105
ID: 112667
Credit: 5,953,021
RAC: 7,157
Message 62238 - Posted 15 Jul 2009 16:10:47 UTC

Please, please, please post notice of new versions to Rosetta Application Version Release Log. That's why we subscribe to it.

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62244 - Posted 16 Jul 2009 6:33:28 UTC

Hi.

This one lasted around 7 sec.

lr10_seq_score12_rlbd_1ptq_IGNORE_THE_REST_DECOY_13841_3969_0

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=242762845


<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>

____________


Speedy
Avatar

Joined: Sep 25 05
Posts: 159
ID: 1058
Credit: 507,926
RAC: 0
Message 62245 - Posted 16 Jul 2009 6:53:14 UTC

G'day
This one lasted around 5 minutes

lr8_seq_score12_ss5.0_rlbd_1ptq_IGNORE_THE_REST_DECOY_14281_655_0

http://boinc.bakerlab.org/rosetta/result.php?resultid=266057438

<core_client_version>6.6.28</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>

____________
Have a crunching good day!!

AMD_is_logical

Joined: Dec 20 05
Posts: 299
ID: 41207
Credit: 31,460,681
RAC: 0
Message 62252 - Posted 16 Jul 2009 17:56:00 UTC

This WU, lr8_seq_score12_ss5.0_rlbd_1ptq_IGNORE_THE_REST_DECOY_14281_1507_0, had a segmentation violation after 5 seconds on one of my Linux systems.

Snagletooth

Joined: Feb 22 07
Posts: 192
ID: 149031
Credit: 1,396,123
RAC: 1,318
Message 62257 - Posted 17 Jul 2009 4:45:46 UTC

SIGBUS: bus error
lr8_seq_score12_ss5.0_rlbd_1ptq_IGNORE_THE_REST_DECOY_14281_2591_0

Rob Lilley

Joined: Jan 11 06
Posts: 11
ID: 49465
Credit: 95,495
RAC: 18
Message 62269 - Posted 17 Jul 2009 20:47:10 UTC

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000

Happened on this WU after 2 hrs 50 min. This machine worked fine with Rosetta Mini v1.80.
____________

Jimmy McNulty

Joined: Nov 13 05
Posts: 2
ID: 11819
Credit: 74,396
RAC: 0
Message 62270 - Posted 17 Jul 2009 21:11:37 UTC

Sorry if this is the wrong thread or a problem with my computer instead of v1.82. Had another problem with a WU, 2.87% done after 6 hours, and no progress for the 45 minutes I watched it. Probably the 6th time it's happened since I rejoined the project a couple weeks ago. These WU won't abort by themselves, wasting CPU cycles until I check BOINC and abort them. Like I say this might be a problem with my computer, but it doesn't happen with any other project. The research you're doing is great, but i'm suspending the project for now. I'll keep checking back with the new versions to see if the problem persists, but I had the same thing happen last Decemberish when I suspended it the first time, and it seems the updates since then haven't fixed it for me. Best of luck with the project, I hope I can contribute in the future.
____________

RC

Joined: Sep 27 05
Posts: 13
ID: 1401
Credit: 245,498
RAC: 0
Message 62291 - Posted 19 Jul 2009 1:37:19 UTC

Not sure what happened to this one:

http://boinc.bakerlab.org/rosetta/result.php?resultid=266600560

<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
[2009- 7-18 8:29:15:] :: BOINC:: Initializing ... ok.
[2009- 7-18 8:29:15:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
# cpu_run_time_pref: 28800
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
Starting work on structure: _00028
Starting work on structure: _00029
Starting work on structure: _00030
Starting work on structure: _00031
Starting work on structure: _00032
Starting work on structure: _00033
Starting work on structure: _00034
Starting work on structure: _00035
Starting work on structure: _00036
Starting work on structure: _00037
Starting work on structure: _00038
Starting work on structure: _00039
Starting work on structure: _00040
Starting work on structure: _00041
Starting work on structure: _00042
Starting work on structure: _00043
Starting work on structure: _00044
Starting work on structure: _00045
Starting work on structure: _00046
Starting work on structure: _00047
Starting work on structure: _00048
Starting work on structure: _00049
Starting work on structure: _00050
Starting work on structure: _00051
Starting work on structure: _00052
Starting work on structure: _00053
Starting work on structure: _00054
Starting work on structure: _00055
Starting work on structure: _00056
Starting work on structure: _00057
[2009- 7-18 20:37: 0:] :: BOINC:: Initializing ... ok.
[2009- 7-18 20:37: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 28800
Starting work on structure: _00057
Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_2 ... success!
SIGBUS: bus error

Crashed executable name: minirosetta_1.82_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.7 build 9J61
Sat Jul 18 20:37:10 2009

atos cannot load symbols for the file minirosetta_1.82_i686-apple-darwin.
0 0x00703b59 SIGPIPE: write on a pipe with no reader
1 0x004c2bd6 SIGPIPE: write on a pipe with no reader
2 0x909252bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x00a7c005 SIGPIPE: write on a pipe with no reader
5 0x00158633 SIGPIPE: write on a pipe with no reader
6 0x0016e2e7 SIGPIPE: write on a pipe with no reader
7 0x005ea582 SIGPIPE: write on a pipe with no reader
8 0x00115072 SIGPIPE: write on a pipe with no reader
9 0x00128717 SIGPIPE: write on a pipe with no reader
10 0x000042a8 SIGPIPE: write on a pipe with no reader
11 0x0000204e SIGPIPE: write on a pipe with no reader
12 0x00001f75 SIGPIPE: write on a pipe with no reader
13 0x00000014
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x908ed8c2 ecx: 0xbfff7c0c edx: 0x908b9286
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfff7c48 esp: 0xbfff7c0c
ss: 0x0000001f efl: 0x00000206 eip: 0x908b9286 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

Binary Images Description:
0x1000 - 0x17a7fff /Library/Application Support/BOINC Data/slots/3/../../projects/boinc.bakerlab.org_rosetta/minirosetta_1.82_i686-apple-darwin
0x3e000000 - 0x3e045fff /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT
0x90003000 - 0x904d4fff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x904d6000 - 0x90530fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x907a0000 - 0x9081afff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x9081b000 - 0x90844fff /usr/lib/libcups.2.dylib
0x908b8000 - 0x90a1ffff /usr/lib/libSystem.B.dylib
0x90a20000 - 0x90a2dfff /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x90a3e000 - 0x90a3efff /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x90a3f000 - 0x90aeffff /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x90af0000 - 0x90b2efff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x90b2f000 - 0x9132dfff /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x9132e000 - 0x913e0fff /usr/lib/libcrypto.0.9.7.dylib
0x91404000 - 0x91556fff /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x9155f000 - 0x91606fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x91607000 - 0x9160afff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x9160b000 - 0x91612fff /usr/lib/libgcc_s.1.dylib
0x91613000 - 0x91614fff /usr/lib/libffi.dylib
0x91ea7000 - 0x91ec6fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x91ef7000 - 0x91f07fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x91fd2000 - 0x922acfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x922b9000 - 0x92336fff /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x924c0000 - 0x924fffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x92573000 - 0x926acfff /usr/lib/libicucore.A.dylib
0x926d8000 - 0x926defff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x926df000 - 0x926e7fff /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x926e8000 - 0x927d0fff /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x927d1000 - 0x927d8fff /usr/lib/libbsm.dylib
0x927d9000 - 0x92893fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x92894000 - 0x928affff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x92900000 - 0x92940fff /System/Library/PrivateFrameworks/CoreMediaIOServicesPrivate.framework/Versions/A/CoreMediaIOServicesPrivate
0x92941000 - 0x92941fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x9297f000 - 0x929a8fff /System/Library/PrivateFrameworks/CoreMediaPrivate.framework/Versions/A/CoreMediaPrivate
0x929a9000 - 0x929f2fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x929f3000 - 0x92a20fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x92b33000 - 0x92b8cfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x92b8d000 - 0x92c17fff /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x92c5a000 - 0x92c5afff /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
0x92c60000 - 0x92cb1fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x92d04000 - 0x92d97fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x92d98000 - 0x92e1ffff /usr/lib/libsqlite3.0.dylib
0x92f0f000 - 0x92f25fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x92f26000 - 0x92f28fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x92f3b000 - 0x92f53fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x92f54000 - 0x9309afff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x9309b000 - 0x9312efff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x9312f000 - 0x934ccfff /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x934cd000 - 0x934cdfff /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x93505000 - 0x93529fff /usr/lib/libxslt.1.dylib
0x9352a000 - 0x93bcafff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x93bcb000 - 0x93e47fff /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x93e48000 - 0x93e48fff /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x93e99000 - 0x93f18fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x93f19000 - 0x93f37fff /usr/lib/libresolv.9.dylib
0x93f38000 - 0x93f38fff /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x94f33000 - 0x952f1fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x95321000 - 0x953adfff /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x953ae000 - 0x95465fff /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
0x955d4000 - 0x955e0fff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x955e1000 - 0x95618fff /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x9564c000 - 0x95713fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x95714000 - 0x95719fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x9571a000 - 0x957a6fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x957a7000 - 0x957bcfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x957bd000 - 0x95819fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x95871000 - 0x95951fff /usr/lib/libobjc.A.dylib
0x95952000 - 0x95952fff /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x95953000 - 0x95955fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x959bd000 - 0x959fffff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x95a00000 - 0x95bd1fff /System/Library/Frameworks/Security.framework/Versions/A/Security
0x95bd2000 - 0x95c4ffff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x95d4b000 - 0x95d85fff /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x95dcd000 - 0x95dd1fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x95dd2000 - 0x960f8fff /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime
0x960f9000 - 0x9622cfff /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x9634b000 - 0x96416fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x96417000 - 0x96474fff /usr/lib/libstdc++.6.dylib
0x96632000 - 0x9663cfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x9663d000 - 0x9666cfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x96677000 - 0x96680fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x966bc000 - 0x966bcfff /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x96821000 - 0x96839fff /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x9683a000 - 0x9691bfff /usr/lib/libxml2.2.dylib
0x96929000 - 0x969cdfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x969ce000 - 0x969f9fff /usr/lib/libauto.dylib
0x96b7a000 - 0x96b8afff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x96b9b000 - 0x96b9bfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x96be1000 - 0x96ee9fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x970ac000 - 0x970b0fff /usr/lib/system/libmathCommon.A.dylib
0x970b1000 - 0x970bffff /usr/lib/libz.1.dylib
0x970c0000 - 0x974d0fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib


Exiting...

</stderr_txt>
]]>
____________

bruce Profile

Joined: Sep 15 07
Posts: 10
ID: 205458
Credit: 839,797
RAC: 0
Message 62299 - Posted 19 Jul 2009 16:56:41 UTC

I've been experiencing some issues with Minirosetta on 3 computers for quite some time. With no resolution, I had detached those computers from the project. Recently with release of 1.82 I decided to try the project again one computer and the problems continue.

Please reverence these links for background information:

http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62234
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62222
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62095

http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61739
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61424
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61359

For specifics on the WUs you can see the errored ones here:
http://boinc.bakerlab.org/rosetta/results.php?userid=205458&offset=100

is there anything else beyond what I've supplied that can assist in resolving this issue?

Thanks.
____________

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62303 - Posted 20 Jul 2009 1:41:36 UTC

Hi.

Got this one this morning, it ran for 23min.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=243594843

Mon 20 Jul 2009 10:12:54 EST|rosetta@home|Output file lr8_score12_run02_rlbd_1wou_IGNORE_THE_REST_DECOY_12906_528_0_0 for task absent

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>



____________


Greg_BE Profile
Avatar

Joined: May 30 06
Posts: 4835
ID: 85645
Credit: 2,948,921
RAC: 243
Message 62305 - Posted 20 Jul 2009 8:00:30 UTC
Last modified: 20 Jul 2009 8:01:26 UTC

Got a validate error out of this one frb_0_8_mike_chosen_intersection_new_hb_t367__IGNORE_THE_REST_1UFBA_4_13877_13_1.
Was granted only 4 credits for a fast run with 99 models. Only 1201 seconds run time! Something like 12 models a second?

TimL

Joined: Sep 16 06
Posts: 14
ID: 112884
Credit: 8,492,974
RAC: 5,867
Message 62309 - Posted 20 Jul 2009 10:12:04 UTC

This one lr8_seq_score12_ss5.0_rlbd_1aiu_IGNORE_THE_REST_DECOY_14281_320_0 caused

Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000


Lots of windows debug info included in the error message for any who are willing and able.
____________

bruce Profile

Joined: Sep 15 07
Posts: 10
ID: 205458
Credit: 839,797
RAC: 0
Message 62329 - Posted 21 Jul 2009 7:03:45 UTC - in response to Message ID 62299.

I've been experiencing some issues with Minirosetta on 3 computers for quite some time. With no resolution, I had detached those computers from the project. Recently with release of 1.82 I decided to try the project again one computer and the problems continue.

Please reverence these links for background information:

http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62234
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62222
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4953&nowrap=true#62095

http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61739
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61424
http://boinc.bakerlab.org/rosetta/forum_thread.php?id=4876&nowrap=true#61359

For specifics on the WUs you can see the errored ones here:
http://boinc.bakerlab.org/rosetta/results.php?userid=205458&offset=100

is there anything else beyond what I've supplied that can assist in resolving this issue?

Thanks.


Sorry, should have made those proper links the first time...
____________

alpha Profile

Joined: Nov 4 06
Posts: 27
ID: 127202
Credit: 868,017
RAC: 764
Message 62332 - Posted 21 Jul 2009 9:00:14 UTC

Compute error after 4,961 seconds:

http://boinc.bakerlab.org/rosetta/result.php?resultid=266802566

SIGSEGV: segmentation violation
____________

alpha Profile

Joined: Nov 4 06
Posts: 27
ID: 127202
Credit: 868,017
RAC: 764
Message 62371 - Posted 22 Jul 2009 15:21:18 UTC

Compute error after 29,773 seconds:

http://boinc.bakerlab.org/rosetta/result.php?resultid=267060110

SIGSEGV: segmentation violation
____________

elninio

Joined: Jun 16 09
Posts: 4
ID: 321871
Credit: 19,571
RAC: 0
Message 62383 - Posted 23 Jul 2009 5:01:16 UTC

1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)

Greg_BE Profile
Avatar

Joined: May 30 06
Posts: 4835
ID: 85645
Credit: 2,948,921
RAC: 243
Message 62387 - Posted 23 Jul 2009 8:50:50 UTC - in response to Message ID 62383.
Last modified: 23 Jul 2009 8:53:33 UTC

1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)


occasionaly you get a bad batch of tasks such as lr8_seq_score12_ss5.0_rlbd_1h75_IGNORE_THE_REST_DECOY_14281_1247_0 which also errored out on another computer.

Exit status 193 (0xc1)
SIGABRT: abort called
Stack trace (14 frames):
[0x94fa937]
[0x9525044]
[0xb7f2c400]
[0x9589b04]
[0x959f853]
[0x95a48b9]
[0x95a4b97]
[0x9574871]
[0x94fe67a]
[0x94f9243]
[0x816a334]
[0x8048e92]
[0x9582a0c]
[0x8048111]


when you get failures like what is shown in that task..report it here.
this gives the team and other users an idea of what is going on with these tasks. if it is a common enough error the team notices from all the posts that something is wrong.

keep crunching...not everything fails.

Snagletooth

Joined: Feb 22 07
Posts: 192
ID: 149031
Credit: 1,396,123
RAC: 1,318
Message 62388 - Posted 23 Jul 2009 12:59:55 UTC - in response to Message ID 62383.

1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)

While greg be might be correct and you've just had a bit of bad luck with bad batches of tasks it's worth noting that quite a few of your failed tasks have been completed successfully by others. It may be possible that that some tasks only fail on a particular OS (Linux in your case)but it might be worth following Jorden's advice here and testing your memory.

svincent

Joined: Dec 30 05
Posts: 202
ID: 44923
Credit: 4,102,500
RAC: 5,735
Message 62393 - Posted 23 Jul 2009 16:21:41 UTC

267566898 failed on Mac with a bus error.

Fullatom mode ..
Starting work on structure: S_shuffle_00004 <--- S_00027_0002086_0_test_8.0.out
SIGBUS: bus error

.
.
.
Crashed executable name: minirosetta_1.82_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.7 build 9J61
Thu Jul 23 04:39:06 2009

sh: /usr/bin/atos: No such file or directory
0 0x00703b59 SIGPIPE: write on a pipe with no reader
1 0x004c2bd6 SIGPIPE: write on a pipe with no reader
2 0x9637d2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader

etc.
____________

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62399 - Posted 23 Jul 2009 22:01:07 UTC

This one has errored twice, ran for 3 min's.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=243890681

Thu 23 Jul 2009 21:46:01 EST|rosetta@home|Output file lr8_score12_dun08_run01_rlbd_1bq9_IGNORE_THE_REST_DECOY_12998_864_1 for task absent

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>


____________


jwleaf2

Joined: Dec 14 08
Posts: 2
ID: 292524
Credit: 153,511
RAC: 0
Message 62400 - Posted 23 Jul 2009 22:31:08 UTC

For several weeks this messages shows up a lot:

Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.

After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.

This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?

RatMotor

Joined: Feb 4 06
Posts: 1
ID: 56563
Credit: 99,738
RAC: 0
Message 62404 - Posted 24 Jul 2009 4:38:20 UTC

http://boinc.bakerlab.org/rosetta/result.php?resultid=267162598

Ran for ~17 hours, stalled at 60.274% for over an hour - clicking "Show graphics" in the BOINC manager only resulted in "program not responding" errors
____________

ByRad Profile
Avatar

Joined: Apr 12 08
Posts: 8
ID: 252633
Credit: 8,231,131
RAC: 13,507
Message 62411 - Posted 24 Jul 2009 9:48:44 UTC

Windows error report:

And its logfile:
<?xml version="1.0" encoding="UTF-16"?>
<DATABASE>
<EXE NAME="minirosetta_1.82_windows_intelx86.exe" FILTER="GRABMI_FILTER_PRIVACY">
<MATCHING_FILE NAME="minirosetta_1.82_windows_intelx86.exe" SIZE="9027584" CHECKSUM="0x1B4884C6" MODULE_TYPE="WIN32" PE_CHECKSUM="0x89E7B8" LINKER_VERSION="0x0" LINK_DATE="07/13/2009 21:14:23" UPTO_LINK_DATE="07/13/2009 21:14:23" />
<MATCHING_FILE NAME="minirosetta_graphics_1.64_windows_intelx86.exe" SIZE="2498560" CHECKSUM="0x68E6C809" MODULE_TYPE="WIN32" PE_CHECKSUM="0x26DABE" LINKER_VERSION="0x0" LINK_DATE="04/28/2009 20:31:11" UPTO_LINK_DATE="04/28/2009 20:31:11" />
<MATCHING_FILE NAME="rosetta_beta_5.98_windows_intelx86.exe" SIZE="2683904" CHECKSUM="0xE577941B" MODULE_TYPE="WIN32" PE_CHECKSUM="0x0" LINKER_VERSION="0x0" LINK_DATE="06/24/2008 20:49:17" UPTO_LINK_DATE="06/24/2008 20:49:17" />
</EXE>
<EXE NAME="ntdll.dll" FILTER="GRABMI_FILTER_THISFILEONLY">
<MATCHING_FILE NAME="ntdll.dll" SIZE="714752" CHECKSUM="0xC695BA95" BIN_FILE_VERSION="5.1.2600.5755" BIN_PRODUCT_VERSION="5.1.2600.5755" PRODUCT_VERSION="5.1.2600.5755" FILE_DESCRIPTION="NT Layer DLL" COMPANY_NAME="Microsoft Corporation" PRODUCT_NAME="Microsoft® Windows® Operating System" FILE_VERSION="5.1.2600.5755 (xpsp_sp3_gdr.090206-1234)" ORIGINAL_FILENAME="ntdll.dll" INTERNAL_NAME="ntdll.dll" LEGAL_COPYRIGHT="© Microsoft Corporation. All rights reserved." VERFILEDATEHI="0x0" VERFILEDATELO="0x0" VERFILEOS="0x40004" VERFILETYPE="0x2" MODULE_TYPE="WIN32" PE_CHECKSUM="0xBC674" LINKER_VERSION="0x50001" UPTO_BIN_FILE_VERSION="5.1.2600.5755" UPTO_BIN_PRODUCT_VERSION="5.1.2600.5755" LINK_DATE="02/09/2009 12:10:48" UPTO_LINK_DATE="02/09/2009 12:10:48" VER_LANGUAGE="English (United States) [0x409]" />
</EXE>
<EXE NAME="kernel32.dll" FILTER="GRABMI_FILTER_THISFILEONLY">
<MATCHING_FILE NAME="kernel32.dll" SIZE="989696" CHECKSUM="0x2D998938" BIN_FILE_VERSION="5.1.2600.5781" BIN_PRODUCT_VERSION="5.1.2600.5781" PRODUCT_VERSION="5.1.2600.5781" FILE_DESCRIPTION="Windows NT BASE API Client DLL" COMPANY_NAME="Microsoft Corporation" PRODUCT_NAME="Microsoft® Windows® Operating System" FILE_VERSION="5.1.2600.5781 (xpsp_sp3_gdr.090321-1317)" ORIGINAL_FILENAME="kernel32" INTERNAL_NAME="kernel32" LEGAL_COPYRIGHT="© Microsoft Corporation. All rights reserved." VERFILEDATEHI="0x0" VERFILEDATELO="0x0" VERFILEOS="0x40004" VERFILETYPE="0x2" MODULE_TYPE="WIN32" PE_CHECKSUM="0xFE572" LINKER_VERSION="0x50001" UPTO_BIN_FILE_VERSION="5.1.2600.5781" UPTO_BIN_PRODUCT_VERSION="5.1.2600.5781" LINK_DATE="03/21/2009 14:06:58" UPTO_LINK_DATE="03/21/2009 14:06:58" VER_LANGUAGE="English (United States) [0x409]" />
</EXE>
</DATABASE>
____________

jwleaf2

Joined: Dec 14 08
Posts: 2
ID: 292524
Credit: 153,511
RAC: 0
Message 62416 - Posted 24 Jul 2009 17:46:09 UTC - in response to Message ID 62400.

For several weeks this messages shows up a lot:

Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.

After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.

This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?


The problem seems to have been fixed by uninstalling an old version of BOINC and reinstalling the current version. I was looking for differences between the computer that worked and the one that didn't.

Rob Lilley

Joined: Jan 11 06
Posts: 11
ID: 49465
Credit: 95,495
RAC: 18
Message 62418 - Posted 25 Jul 2009 0:01:02 UTC - in response to Message ID 62269.
Last modified: 25 Jul 2009 0:03:37 UTC

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000

Happened on this WU after 2 hrs 50 min. This machine worked fine with Rosetta Mini v1.80.


Another access violation for this WU, and it's definitely not just me, as my wingman got the same error.
____________

svincent

Joined: Dec 30 05
Posts: 202
ID: 44923
Credit: 4,102,500
RAC: 5,735
Message 62423 - Posted 25 Jul 2009 14:14:19 UTC

Another "SIGPIPE: write on a pipe with no reader" failure on Mac

267796917
____________

AMD_is_logical

Joined: Dec 20 05
Posts: 299
ID: 41207
Credit: 31,460,681
RAC: 0
Message 62424 - Posted 25 Jul 2009 18:40:42 UTC

The WU looprebuild_t374_decoy_1_12863_2519 had a validate error for both crunchers after crunching a short amount of time and producing 99 decoys.

banditwolf Profile

Joined: Jan 10 06
Posts: 28
ID: 49031
Credit: 139,737
RAC: 0
Message 62434 - Posted 26 Jul 2009 3:36:19 UTC

Keep getting this for Mini rosetta 1.86.

7/25/2009 9:42:32 PM|rosetta@home|Started download of fragments_1e6i.zip
7/25/2009 9:42:49 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:49 PM|rosetta@home|Temporarily failed download of lr13_2hng.out.zip: system connect
7/25/2009 9:42:50 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:50 PM|rosetta@home|Started download of lr13_2hng.out.zip
7/25/2009 9:42:52 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:52 PM|rosetta@home|Temporarily failed download of fragments_1e6i.zip: system connect
7/25/2009 9:42:53 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:53 PM|rosetta@home|Started download of fragments_1e6i.zip


A 1.82 wu downloaded no problem.

Dale Kirstein

Joined: Nov 29 05
Posts: 6
ID: 23204
Credit: 397,464
RAC: 146
Message 62467 - Posted 26 Jul 2009 17:43:39 UTC

I just got several 1.86 WU with a length of --. Houston I think we have a problem.
____________

robertmiles Profile

Joined: Jun 16 08
Posts: 656
ID: 264600
Credit: 3,462,248
RAC: 2,198
Message 62469 - Posted 26 Jul 2009 18:06:13 UTC

I'm currently unable to upload some of the output files for these three 1.82
workunits, which makes it difficult to get a view of whether those workunits completed without error.

Also, note the failure to download all of a 1.86 workunit.

I've editted out the messages related to workunits from other projects.

7/26/2009 11:55:32 AM rosetta@home Restarting task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 using minirosetta version 182
7/26/2009 11:55:42 AM rosetta@home Started upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:55:42 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of looprebuild_t374_nat_6_12863_3672_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 3 hr 4 min 52 sec on upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 12 min 15 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 11:56:05 AM rosetta@home Requesting new tasks
7/26/2009 11:56:27 AM Project communication failed: attempting access to reference site
7/26/2009 11:56:27 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:27 AM rosetta@home Backing off 1 hr 20 min 9 sec on upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:29 AM Internet access OK - project servers may be temporarily down.
7/26/2009 11:56:31 AM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:06:07 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:06:07 PM rosetta@home Requesting new tasks
7/26/2009 12:06:32 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:08:21 PM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:43 PM Project communication failed: attempting access to reference site
7/26/2009 12:08:43 PM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 12:08:43 PM rosetta@home Backing off 2 hr 20 min 50 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:45 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:09:41 PM rosetta@home Computation for task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 finished
7/26/2009 12:09:43 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:05 PM Project communication failed: attempting access to reference site
7/26/2009 12:10:05 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:10:05 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:06 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:10:38 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:10:38 PM rosetta@home Requesting new tasks
7/26/2009 12:11:00 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:11:03 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:11:05 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:27 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:11:27 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:03 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:12:03 PM rosetta@home Requesting new tasks
7/26/2009 12:12:27 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:49 PM Project communication failed: attempting access to reference site
7/26/2009 12:12:49 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:12:49 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:50 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:53 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:13:49 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:11 PM Project communication failed: attempting access to reference site
7/26/2009 12:14:12 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:14:12 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:13 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:15:12 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:10 PM Project communication failed: attempting access to reference site
7/26/2009 12:16:10 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:16:10 PM rosetta@home Backing off 2 min 18 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:11 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:16:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:16:59 PM rosetta@home Requesting new tasks
7/26/2009 12:17:29 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:18:28 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:20:21 PM rosetta@home Finished upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:21:34 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:21:34 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:21:56 PM Project communication failed: attempting access to reference site
7/26/2009 12:21:57 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:21:59 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:22:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:22:59 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:23:21 PM Project communication failed: attempting access to reference site
7/26/2009 12:23:22 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:23:24 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:24:24 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:24:24 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:25:15 PM rosetta@home Scheduler request completed: got 1 new tasks
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_1.86_windows_x86_64.exe: HTTP error
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_database_rev31588.zip: HTTP error
7/26/2009 12:28:24 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:28:24 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:28:25 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:28:46 PM Project communication failed: attempting access to reference site
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of relax_options_lr8_mmbend_yfsong: connect() failed
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of score12_mmbend_yf.wts: connect() failed
7/26/2009 12:28:46 PM rosetta@home Started download of boinc_rb1_2ci2.pdb
7/26/2009 12:28:46 PM rosetta@home Started download of lr8_2ci2.out.zip
7/26/2009 12:28:47 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:29:39 PM rosetta@home Finished download of boinc_rb1_2ci2.pdb
7/26/2009 12:29:39 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:30:01 PM Project communication failed: attempting access to reference site
7/26/2009 12:30:01 PM rosetta@home Temporarily failed download of yfsong_lr8_mmbend.zip: connect() failed
7/26/2009 12:30:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:30:02 PM rosetta@home [error] File minirosetta_1.86_windows_x86_64.exe has wrong size: expected 9338880, got 0
7/26/2009 12:30:02 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home Finished download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home [error] File minirosetta_database_rev31588.zip has wrong size: expected 29091359, got 0
7/26/2009 12:31:23 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:33:05 PM rosetta@home Finished download of lr8_2ci2.out.zip
7/26/2009 12:33:05 PM rosetta@home [error] File yfsong_lr8_mmbend.zip has wrong size: expected 143, got 0
7/26/2009 12:33:05 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:06 PM rosetta@home Finished download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:08 PM rosetta@home [error] File relax_options_lr8_mmbend_yfsong has wrong size: expected 90, got 0
7/26/2009 12:33:08 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home Finished download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home [error] File score12_mmbend_yf.wts has wrong size: expected 413, got 0
7/26/2009 12:33:09 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:33:10 PM rosetta@home Finished download of score12_mmbend_yf.wts
7/26/2009 12:35:42 PM rosetta@home Finished download of minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Signature verification error for minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Checksum or signature error for minirosetta_database_rev31588.zip
7/26/2009 12:39:04 PM rosetta@home update requested by user
7/26/2009 12:39:07 PM rosetta@home Sending scheduler request: Requested by user.
7/26/2009 12:39:07 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:39:29 PM Project communication failed: attempting access to reference site
7/26/2009 12:39:30 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:39:32 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:40:33 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:40:33 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:41:33 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:45:40 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:45:40 PM rosetta@home Requesting new tasks
7/26/2009 12:46:02 PM Project communication failed: attempting access to reference site
7/26/2009 12:46:03 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:46:05 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:47:05 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:47:05 PM rosetta@home Requesting new tasks
7/26/2009 12:47:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:47:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:47:30 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:48:31 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:48:31 PM rosetta@home Requesting new tasks
7/26/2009 12:49:21 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:53:27 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:53:27 PM rosetta@home Requesting new tasks
7/26/2009 12:53:57 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:58:08 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:58:08 PM rosetta@home Requesting new tasks
7/26/2009 12:58:49 PM rosetta@home Scheduler request completed: got 0 new tasks

I'm now out of Rosetta@home workunits that aren't waiting for uploads to complete, so I'll have the computer do workunits for other BOINC projects for a while.

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62486 - Posted 27 Jul 2009 1:33:14 UTC

This one ran full term then errored.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=244612386

Mon 27 Jul 2009 11:12:34 EST|rosetta@home|Output file lr10_seq_score12_rlbd_2fls_IGNORE_THE_REST_DECOY_13841_2876_0_0 for task absent

<core_client_version>6.2.14</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>


SIGSEGV: segmentation violation
Stack trace (15 frames):
[0x94fa937]
[0x9525044]
[0xffffe500]
[0x8cf2b66]
[0x8cf2f30]
[0x8a6064a]
[0x8a61503]
[0x8b66be0]
[0x8bba7e2]
[0x815f88b]
[0x81ad01c]
[0x8168071]
[0x804a75c]
[0x9582a0c]
[0x8048111]

Exiting...

</stderr_txt>
]]>

____________


Wissi

Joined: Nov 19 08
Posts: 14
ID: 288715
Credit: 396,107
RAC: 10
Message 62508 - Posted 27 Jul 2009 15:53:26 UTC - in response to Message ID 62469.
Last modified: 27 Jul 2009 15:55:00 UTC

...
Also, note the failure to download all of a 1.86 workunit.
...


Yeah, the same for me here. Hours and hours of Problem uploading the results of a finished task, then downloads for a new minirotetta 1.86 started, but either the expected database file was 0 bytes, or there was a signature error.

By the way, there was no note on the homepage, that minirosetta had been updated to Rev. 1.86. I just hope that the site wasn't hacked...

And today, I got not one new task, neither in the office nor at home. Strange... rosetta seems to be on vacancy :-)
____________

KenJennings Profile

Joined: Jun 6 06
Posts: 2
ID: 92019
Credit: 5,020,295
RAC: 0
Message 62536 - Posted 28 Jul 2009 2:25:35 UTC

I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.

____________

njmaugbill

Joined: May 12 07
Posts: 1
ID: 176203
Credit: 405,506
RAC: 0
Message 62537 - Posted 28 Jul 2009 2:49:04 UTC - in response to Message ID 62536.

I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.


It's happening here too. I've received nothing since Saturday. Tonight I received 8 and that was it.

Bill

alpha Profile

Joined: Nov 4 06
Posts: 27
ID: 127202
Credit: 868,017
RAC: 764
Message 62561 - Posted 28 Jul 2009 16:53:12 UTC

Compute error:

http://boinc.bakerlab.org/rosetta/result.php?resultid=268080857

The relevant BOINC output was:

27-Jul-2009 08:02:53 [---] Preferences limit disk usage to 0.58GB
27-Jul-2009 08:08:54 [rosetta@home] Aborting task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0: exceeded disk limit: 343.49MB > 286.10MB
27-Jul-2009 08:08:55 [rosetta@home] Computation for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 finished
27-Jul-2009 08:08:55 [rosetta@home] Output file lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0_0 for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 absent

I'm not sure how the disk limit was exceeded here, 286.10MB != 0.58GB.
____________

Mod.Sense
Forum moderator
Project administrator

Joined: Aug 22 06
Posts: 3381
ID: 106194
Credit: 0
RAC: 0
Message 62569 - Posted 28 Jul 2009 21:29:06 UTC

alpha, the .58GB is your overall BOINC preference. Which is then possibly divided across several projects. But the actual failure message is specific to the task. The tasks have a failsafe which kicks in if abnormally large amounts of output are being produced. This appears to be what caused the task to end... odd then that it would say the file was absent. Such mannar of odd things are why your reports in these threads are useful. Thank you.
____________
Rosetta Moderator: Mod.Sense

Greg_BE Profile
Avatar

Joined: May 30 06
Posts: 4835
ID: 85645
Credit: 2,948,921
RAC: 243
Message 62591 - Posted 29 Jul 2009 9:23:35 UTC
Last modified: 29 Jul 2009 9:25:30 UTC

lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_2399_0
lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_2399_0
lr8_seq_score12_ss5.0_rlbd_1wou_IGNORE_THE_REST_DECOY_14281_3248_0
lr10_seq_score12_rlbd_2fls_IGNORE_THE_REST_DECOY_13841_693_0

All came up with:
Outcome Client error
Client State Compute error
Exit status -1073741819 (0xc0000005)
Al of them crashed with unhandeled exception error in full atom mode

Path7

Joined: Aug 25 07
Posts: 128
ID: 201002
Credit: 61,751
RAC: 0
Message 62602 - Posted 29 Jul 2009 20:05:29 UTC
Last modified: 29 Jul 2009 20:47:15 UTC

My first minirosetta 1.88 WU ended with an: incorrect function:

lr8_B_seq_score12_ss5.0_rlbd_2uzr_IGNORE_THE_REST_DECOY_14598_374_0

ERROR: Option matching -detect_disulf not found in command line top-level context

Edit: The same error on the second run.

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62603 - Posted 29 Jul 2009 21:48:23 UTC

This one failed, zero time.

mini 1.87.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=243855048

Wed 29 Jul 2009 19:43:07 EST|rosetta@home|Output file looprebuild_t374_decoy_5_12863_2471_0_0 for task absent


____________


Luciano Bastianello

Joined: Sep 9 06
Posts: 4
ID: 111026
Credit: 269,064
RAC: 0
Message 62604 - Posted 29 Jul 2009 23:22:44 UTC - in response to Message ID 62603.
Last modified: 29 Jul 2009 23:35:10 UTC

Windows Vista Ultimate 64
Kaspersky Internet Security
minirosetta_1.88_windows_x86_64.exe is build without signature.
On my sistem is jailed in "bad applications", execution forbidden.
____________

AMD_is_logical

Joined: Dec 20 05
Posts: 299
ID: 41207
Credit: 31,460,681
RAC: 0
Message 62607 - Posted 30 Jul 2009 0:12:45 UTC

I'm getting a lot of 1.88 WUs with compute errors after zero time. They have the error message: "ERROR: Option matching -detect_disulf not found in command line top-level context"

A few examples:
http://boinc.bakerlab.org/rosetta/result.php?resultid=268993566
http://boinc.bakerlab.org/rosetta/result.php?resultid=268991528
http://boinc.bakerlab.org/rosetta/result.php?resultid=268991527
http://boinc.bakerlab.org/rosetta/result.php?resultid=268990691
http://boinc.bakerlab.org/rosetta/result.php?resultid=268990689
http://boinc.bakerlab.org/rosetta/result.php?resultid=268987949
http://boinc.bakerlab.org/rosetta/result.php?resultid=268987910
http://boinc.bakerlab.org/rosetta/result.php?resultid=268985221
http://boinc.bakerlab.org/rosetta/result.php?resultid=268984719

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62610 - Posted 30 Jul 2009 1:38:06 UTC

Another with zero time.

mini 1.88.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245295471

Thu 30 Jul 2009 09:28:36 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1b3a_IGNORE_THE_REST_DECOY_14598_574_0_0 for task absent

____________


P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62611 - Posted 30 Jul 2009 3:10:27 UTC
Last modified: 30 Jul 2009 3:22:20 UTC

Another four failed on my quad all with zero time.

What have you done? Is it a bad batch?

mini 1.88.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245330803
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245256796
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245329397
http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245267600


Thu 30 Jul 2009 12:48:16 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1a8o_IGNORE_THE_REST_DECOY_14598_435_1_0 for task absent

Thu 30 Jul 2009 12:48:18 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1o4w_IGNORE_THE_REST_DECOY_14598_752_0_0 for task absent

Thu 30 Jul 2009 12:48:19 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1ugh_IGNORE_THE_REST_DECOY_14598_381_1_0 for task absent

Thu 30 Jul 2009 12:48:21 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1wdv_IGNORE_THE_REST_DECOY_14598_759_0_0 for task absent
================================================================================
Edit // I just found another on my 3ghz rig same error as others.

http://boinc.bakerlab.org/rosetta/workunit.php?wuid=245327804

Thu 30 Jul 2009 12:34:51 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1t2i_IGNORE_THE_REST_DECOY_14598_1885_0_0 for task absent

process exited with code 1 (0x1, -255)

ERROR: Option matching -detect_disulf not found in command line top-level context
____________


ViVac

Joined: Dec 10 08
Posts: 4
ID: 292074
Credit: 101,076
RAC: 0
Message 62613 - Posted 30 Jul 2009 5:36:52 UTC

got two 0 sec error after 1.88

<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-30 13:28:59:] :: BOINC:: Initializing ... ok.
[2009- 7-30 13:28:59:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context

</stderr_txt>
]]>

http://boinc.bakerlab.org/rosetta/result.php?resultid=269086838
http://boinc.bakerlab.org/rosetta/result.php?resultid=269089801

[VENETO] boboviz Profile

Joined: Dec 1 05
Posts: 545
ID: 25524
Credit: 1,510,213
RAC: 1,277
Message 62623 - Posted 30 Jul 2009 10:30:27 UTC - in response to Message ID 62613.

got two 0 sec error after 1.88

http://boinc.bakerlab.org/rosetta/result.php?resultid=269086838
http://boinc.bakerlab.org/rosetta/result.php?resultid=269089801



Same here
http://boinc.bakerlab.org/rosetta/result.php?resultid=269063471
http://boinc.bakerlab.org/rosetta/result.php?resultid=269061152
http://boinc.bakerlab.org/rosetta/result.php?resultid=268941898
http://boinc.bakerlab.org/rosetta/result.php?resultid=269012124
____________

gerlik

Joined: Nov 19 06
Posts: 10
ID: 130192
Credit: 122,074
RAC: 0
Message 62624 - Posted 30 Jul 2009 10:34:57 UTC

most of 1.88 wu failed at start up, only 1 on my pc (linux) is working
I have 1 1.87 wich try to upload but can't.
There is very difficult to download new wu but also same difficult to upload when wu has successfully ended: can't link to server (lot of http error )
____________

Rabenherz85

Joined: Jun 25 09
Posts: 3
ID: 323640
Credit: 9,089
RAC: 0
Message 62626 - Posted 30 Jul 2009 11:19:33 UTC
Last modified: 30 Jul 2009 11:20:41 UTC

30.07.2009 13:17:25 rosetta@home Started upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:08 Project communication failed: attempting access to reference site
30.07.2009 13:20:08 rosetta@home Temporarily failed upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0: HTTP error
30.07.2009 13:20:08 rosetta@home Backing off 11 min 28 sec on upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:10 Internet access OK - project servers may be temporarily down.



Tried to upload ths WU for about an hour now without success

Mack

Joined: Apr 27 07
Posts: 3
ID: 170290
Credit: 185,160
RAC: 0
Message 62635 - Posted 30 Jul 2009 14:43:53 UTC

Thu Jul 30 09:23:59 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 using minirosetta version 188
Thu Jul 30 09:24:00 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 finished
Thu Jul 30 09:24:00 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1_0 for task lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2209_1 absent
Thu Jul 30 09:24:00 2009 rosetta@home Starting lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1
Thu Jul 30 09:24:00 2009 rosetta@home Starting task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 using minirosetta version 188
Thu Jul 30 09:24:01 2009 rosetta@home Computation for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 finished
Thu Jul 30 09:24:01 2009 rosetta@home Output file lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1_0 for task lr13_seq_score12_F_rlbd_4ubp_IGNORE_THE_REST_DECOY_14592_822_1 absent
Thu Jul 30 09:24:01 2009 rosetta@home Starting lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1
Thu Jul 30 09:24:02 2009 rosetta@home Starting task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 using minirosetta version 188
Thu Jul 30 09:36:06 2009 rosetta@home Computation for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 finished
Thu Jul 30 09:36:06 2009 rosetta@home Output file lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1_0 for task lr8_chbond05_icoor_run01_rlbd_1ptq_IGNORE_THE_REST_DECOY_14595_758_1 absent
Thu Jul 30 09:36:06 2009 rosetta@home Starting lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1
Thu Jul 30 09:36:06 2009 rosetta@home Starting task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 using minirosetta version 188
Thu Jul 30 09:36:08 2009 rosetta@home Computation for task lr8_B_seq_score12_ss5.0_rlbd_1nps_IGNORE_THE_REST_DECOY_14598_678_1 finished

Luciano Bastianello

Joined: Sep 9 06
Posts: 4
ID: 111026
Credit: 269,064
RAC: 0
Message 62636 - Posted 30 Jul 2009 16:11:28 UTC

All my 3 computers
Windows vista ultimate 64
Windows Server 2008 64
Linux Fedora 9 64
have a lot of errors:
--- begin ---
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
Funzione non corretta. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-30 10:38:12:] :: BOINC:: Initializing ... ok.
[2009- 7-30 10:38:12:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context

</stderr_txt>
]]>
-- end ---

____________

googloo
Avatar

Joined: Sep 15 06
Posts: 105
ID: 112667
Credit: 5,953,021
RAC: 7,157
Message 62641 - Posted 30 Jul 2009 17:46:16 UTC

What's the point of having a Rosetta Application Version Release Log if you Forum moderator
Project administrator
Project developer
Project scientist
don't post to it?

BillK Profile

Joined: Oct 31 05
Posts: 3
ID: 7806
Credit: 698,717
RAC: 0
Message 62644 - Posted 30 Jul 2009 18:18:12 UTC

Multiple errors, Can't download tasks PC that processes 1/hr has only gotten 1 in 24 hrs. Slower Mac none.
____________

Snagletooth

Joined: Feb 22 07
Posts: 192
ID: 149031
Credit: 1,396,123
RAC: 1,318
Message 62646 - Posted 30 Jul 2009 19:04:38 UTC

lr8_B_seq_score12_ss5.0_rlbd_1prq_IGNORE_THE_REST_DECOY_14598_814_1

process exited with code 1 (0x1, -255)

ERROR: Option matching -detect_disulf not found in command line top-level context

Yifan Song
Forum moderator
Project administrator
Project developer
Project scientist

Joined: May 26 09
Posts: 62
ID: 318024
Credit: 7,322
RAC: 0
Message 62648 - Posted 30 Jul 2009 19:33:42 UTC

Sorry about these errors.
A lot of the errors (especially the disulfide ones) are due to the jobs submitted a while ago that need the new flags from the latest update. And after the reversion, those jobs are no longer valid.
Our file server is a bit hammered right now, so it's hard to change those job status as well.
We have found the bug that causes the slowing down of the code though, and we have tested the bug fix on our alpha server. Thus we are updating the program.
Massive network traffic is still expected due to the version update. Hopefully everything will be stabilized in a few days.

P . P . L .
Avatar

Joined: Aug 20 06
Posts: 581
ID: 105843
Credit: 4,864,105
RAC: 0
Message 62662 - Posted 30 Jul 2009 22:06:28 UTC

Here's another one that failed with zero time, hasn't been returned yet.

mini 1.88.

Fri 31 Jul 2009 07:34:09 EST|rosetta@home|Output file lr13_seq_score12_F_rlbd_1gu3_IGNORE_THE_REST_DECOY_14592_1803_1_0 for task absent

____________


Greg_BE Profile
Avatar

Joined: May 30 06
Posts: 4835
ID: 85645
Credit: 2,948,921
RAC: 243
Message 62689 - Posted 31 Jul 2009 21:14:40 UTC
Last modified: 31 Jul 2009 21:17:28 UTC

lr8_B_seq_score12_ss5.0_rlbd_1tig_IGNORE_THE_REST_DECOY_14598_1960_0
lr13_seq_score12_F_rlbd_1urn_IGNORE_THE_REST_DECOY_14592_1938_1
lr8_B_seq_score12_ss5.0_rlbd_2hsb_IGNORE_THE_REST_DECOY_14598_1939_1
lr13_seq_score12_F_rlbd_1a68_IGNORE_THE_REST_DECOY_14592_1904_0
lr8_B_seq_score12_ss5.0_rlbd_1fkb_IGNORE_THE_REST_DECOY_14598_1881_0
lr8_B_seq_score12_ss5.0_rlbd_1o73_IGNORE_THE_REST_DECOY_14598_598_0
lr8_B_seq_score12_ss5.0_rlbd_1ubi_IGNORE_THE_REST_DECOY_14598_1762_1


<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-31 22:54:18:] :: BOINC:: Initializing ... ok.
[2009- 7-31 22:54:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context


If these jobs are not valid, then where was the command from RAH to have the system delete them?

How do you tell which ones were invalid and can be aborted and which ones will run ok?

I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece.

Path7

Joined: Aug 25 07
Posts: 128
ID: 201002
Credit: 61,751
RAC: 0
Message 62690 - Posted 31 Jul 2009 22:11:03 UTC - in response to Message ID 62689.


If these jobs are not valid, then where was the command from RAH to have the system delete them?

How do you tell which ones were invalid and can be aborted and which ones will run ok?

I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece.

Hello Greg,
The error reports above are all about: lrX_XX_seq_score_...... Wu's.
The lrX_XX_mmbend_rlbd_ ..... Wu's are not mentioned in the error reports above.

Be aware: it is sometimes difficult to download new Wu's.

Good luck,
Path7.

Greg_BE Profile
Avatar

Joined: May 30 06
Posts: 4835
ID: 85645
Credit: 2,948,921
RAC: 243
Message 62696 - Posted 1 Aug 2009 11:53:22 UTC
Last modified: 1 Aug 2009 11:55:09 UTC

Here are some more with the same error.
That's 7 from the last time and 3 more for a total of 10 tasks that crashed with 0 time. I think these are part of that batch of disulf tasks that had a code problem.

lr13_seq_score12_F_rlbd_1lis_IGNORE_THE_REST_DECOY_14592_2547_0
lr13_seq_score12_F_rlbd_1kpe_IGNORE_THE_REST_DECOY_14592_2547_0
lr13_seq_score12_F_rlbd_1iib_IGNORE_THE_REST_DECOY_14592_2547_0



<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 8- 1 5: 2:53:] :: BOINC:: Initializing ... ok.
[2009- 8- 1 5: 2:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context

Message boards : Number crunching : Minirosetta 1.82/1.88


Home | Join | About | Participants | Community | Statistics

Copyright © 2017 University of Washington

Last Modified: 10 Nov 2010 1:51:38 UTC
Back to top ^