Rob Lilley Joined: Jan 11 06 Posts: 11 ID: 49465 Credit: 14,487 RAC: 9
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000
Happened on this WU after 2 hrs 50 min. This machine worked fine with Rosetta Mini v1.80.
____________
ID: 62269 | Rating: 0 | rate:
/
Jimmy McNulty Joined: Nov 13 05 Posts: 2 ID: 11819 Credit: 55,242 RAC: 0
Sorry if this is the wrong thread or a problem with my computer instead of v1.82. Had another problem with a WU, 2.87% done after 6 hours, and no progress for the 45 minutes I watched it. Probably the 6th time it's happened since I rejoined the project a couple weeks ago. These WU won't abort by themselves, wasting CPU cycles until I check BOINC and abort them. Like I say this might be a problem with my computer, but it doesn't happen with any other project. The research you're doing is great, but i'm suspending the project for now. I'll keep checking back with the new versions to see if the problem persists, but I had the same thing happen last Decemberish when I suspended it the first time, and it seems the updates since then haven't fixed it for me. Best of luck with the project, I hope I can contribute in the future.
____________
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
[2009- 7-18 8:29:15:] :: BOINC:: Initializing ... ok.
[2009- 7-18 8:29:15:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
# cpu_run_time_pref: 28800
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
Starting work on structure: _00028
Starting work on structure: _00029
Starting work on structure: _00030
Starting work on structure: _00031
Starting work on structure: _00032
Starting work on structure: _00033
Starting work on structure: _00034
Starting work on structure: _00035
Starting work on structure: _00036
Starting work on structure: _00037
Starting work on structure: _00038
Starting work on structure: _00039
Starting work on structure: _00040
Starting work on structure: _00041
Starting work on structure: _00042
Starting work on structure: _00043
Starting work on structure: _00044
Starting work on structure: _00045
Starting work on structure: _00046
Starting work on structure: _00047
Starting work on structure: _00048
Starting work on structure: _00049
Starting work on structure: _00050
Starting work on structure: _00051
Starting work on structure: _00052
Starting work on structure: _00053
Starting work on structure: _00054
Starting work on structure: _00055
Starting work on structure: _00056
Starting work on structure: _00057
[2009- 7-18 20:37: 0:] :: BOINC:: Initializing ... ok.
[2009- 7-18 20:37: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev30680.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 28800
Starting work on structure: _00057
Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000057_ClassicAbinitio__stage_2 ... success!
SIGBUS: bus error
Crashed executable name: minirosetta_1.82_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.7 build 9J61
Sat Jul 18 20:37:10 2009
atos cannot load symbols for the file minirosetta_1.82_i686-apple-darwin.
0 0x00703b59 SIGPIPE: write on a pipe with no reader
1 0x004c2bd6 SIGPIPE: write on a pipe with no reader
2 0x909252bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x00a7c005 SIGPIPE: write on a pipe with no reader
5 0x00158633 SIGPIPE: write on a pipe with no reader
6 0x0016e2e7 SIGPIPE: write on a pipe with no reader
7 0x005ea582 SIGPIPE: write on a pipe with no reader
8 0x00115072 SIGPIPE: write on a pipe with no reader
9 0x00128717 SIGPIPE: write on a pipe with no reader
10 0x000042a8 SIGPIPE: write on a pipe with no reader
11 0x0000204e SIGPIPE: write on a pipe with no reader
12 0x00001f75 SIGPIPE: write on a pipe with no reader
13 0x00000014
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x908ed8c2 ecx: 0xbfff7c0c edx: 0x908b9286
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfff7c48 esp: 0xbfff7c0c
ss: 0x0000001f efl: 0x00000206 eip: 0x908b9286 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
I've been experiencing some issues with Minirosetta on 3 computers for quite some time. With no resolution, I had detached those computers from the project. Recently with release of 1.82 I decided to try the project again one computer and the problems continue.
Please reverence these links for background information:
I've been experiencing some issues with Minirosetta on 3 computers for quite some time. With no resolution, I had detached those computers from the project. Recently with release of 1.82 I decided to try the project again one computer and the problems continue.
Please reverence these links for background information:
1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)
1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)
when you get failures like what is shown in that task..report it here.
this gives the team and other users an idea of what is going on with these tasks. if it is a common enough error the team notices from all the posts that something is wrong.
1.82 is failing (but 5.98) works after i've changed the number of days of workunits to fetch (7) - i've tried detaching and resetting the project to no avail. What to do? ( 1.82 worked before)
While greg be might be correct and you've just had a bit of bad luck with bad batches of tasks it's worth noting that quite a few of your failed tasks have been completed successfully by others. It may be possible that that some tasks only fail on a particular OS (Linux in your case)but it might be worth following Jorden's advice here and testing your memory.
Fullatom mode ..
Starting work on structure: S_shuffle_00004 <--- S_00027_0002086_0_test_8.0.out
SIGBUS: bus error
.
.
.
Crashed executable name: minirosetta_1.82_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.7 build 9J61
Thu Jul 23 04:39:06 2009
sh: /usr/bin/atos: No such file or directory
0 0x00703b59 SIGPIPE: write on a pipe with no reader
1 0x004c2bd6 SIGPIPE: write on a pipe with no reader
2 0x9637d2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
etc.
____________
ID: 62393 | Rating: 0 | rate:
/
P . P . L . Joined: Aug 20 06 Posts: 365 ID: 105843 Credit: 361,915 RAC: 771
Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.
After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.
This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?
Ran for ~17 hours, stalled at 60.274% for over an hour - clicking "Show graphics" in the BOINC manager only resulted in "program not responding" errors
____________
Restarting [name-of-task] using minirosetta version 182
Task [name-of-task] exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.
After about half an hour of this, Rosetta seems to move on to another task, but memory is not freed. The hanging processes can be deleted manually using Process Explorer. Resetting the project does not keep the problem from returning.
This problem happens on one of my Vista Home Premium systems, a laptop with an Intel Core2 Dual P7350 processor, but not on the other computer, a desktop with an Intel Core2 Quad Q8200 processor. The operating temperature of the problem laptop computer sometimes creeps up near the published CPU limit of 90degC. It is controlled by a fan blowing across the laptop and by restricting Rosetta CPU usage to 70%. Could hardware stress explain this problem?
The problem seems to have been fixed by uninstalling an old version of BOINC and reinstalling the current version. I was looking for differences between the computer that worked and the one that didn't.
ID: 62416 | Rating: 0 | rate:
/
Rob Lilley Joined: Jan 11 06 Posts: 11 ID: 49465 Credit: 14,487 RAC: 9
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006C1C6D read attempt to address 0x00000000
Happened on this WU after 2 hrs 50 min. This machine worked fine with Rosetta Mini v1.80.
Another access violation for this WU, and it's definitely not just me, as my wingman got the same error.
____________
7/25/2009 9:42:32 PM|rosetta@home|Started download of fragments_1e6i.zip
7/25/2009 9:42:49 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:49 PM|rosetta@home|Temporarily failed download of lr13_2hng.out.zip: system connect
7/25/2009 9:42:50 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:50 PM|rosetta@home|Started download of lr13_2hng.out.zip
7/25/2009 9:42:52 PM||Project communication failed: attempting access to reference site
7/25/2009 9:42:52 PM|rosetta@home|Temporarily failed download of fragments_1e6i.zip: system connect
7/25/2009 9:42:53 PM||Access to reference site succeeded - project servers may be temporarily down.
7/25/2009 9:42:53 PM|rosetta@home|Started download of fragments_1e6i.zip
I'm currently unable to upload some of the output files for these three 1.82
workunits, which makes it difficult to get a view of whether those workunits completed without error.
Also, note the failure to download all of a 1.86 workunit.
I've editted out the messages related to workunits from other projects.
7/26/2009 11:55:32 AM rosetta@home Restarting task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 using minirosetta version 182
7/26/2009 11:55:42 AM rosetta@home Started upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:55:42 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of looprebuild_t374_nat_6_12863_3672_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 3 hr 4 min 52 sec on upload of looprebuild_t374_nat_6_12863_3672_0_0
7/26/2009 11:56:05 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:05 AM rosetta@home Backing off 12 min 15 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Started upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:05 AM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 11:56:05 AM rosetta@home Requesting new tasks
7/26/2009 11:56:27 AM Project communication failed: attempting access to reference site
7/26/2009 11:56:27 AM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 11:56:27 AM rosetta@home Backing off 1 hr 20 min 9 sec on upload of lr10_seq_score12_rlbd_2he4_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 11:56:29 AM Internet access OK - project servers may be temporarily down.
7/26/2009 11:56:31 AM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:06:07 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:06:07 PM rosetta@home Requesting new tasks
7/26/2009 12:06:32 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:08:21 PM rosetta@home Started upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:43 PM Project communication failed: attempting access to reference site
7/26/2009 12:08:43 PM rosetta@home Temporarily failed upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0: connect() failed
7/26/2009 12:08:43 PM rosetta@home Backing off 2 hr 20 min 50 sec on upload of lr10_seq_score12_rlbd_2hsb_IGNORE_THE_REST_DECOY_13841_3855_0_0
7/26/2009 12:08:45 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:09:41 PM rosetta@home Computation for task lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0 finished
7/26/2009 12:09:43 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:05 PM Project communication failed: attempting access to reference site
7/26/2009 12:10:05 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:10:05 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:10:06 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:10:38 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:10:38 PM rosetta@home Requesting new tasks
7/26/2009 12:11:00 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:11:03 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:11:05 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:11:27 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:11:27 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:11:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:03 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:12:03 PM rosetta@home Requesting new tasks
7/26/2009 12:12:27 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:49 PM Project communication failed: attempting access to reference site
7/26/2009 12:12:49 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:12:49 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:12:50 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:12:53 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:13:49 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:11 PM Project communication failed: attempting access to reference site
7/26/2009 12:14:12 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:14:12 PM rosetta@home Backing off 1 min 0 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:14:13 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:15:12 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:10 PM Project communication failed: attempting access to reference site
7/26/2009 12:16:10 PM rosetta@home Temporarily failed upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0: connect() failed
7/26/2009 12:16:10 PM rosetta@home Backing off 2 min 18 sec on upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:16:11 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:16:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:16:59 PM rosetta@home Requesting new tasks
7/26/2009 12:17:29 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:18:28 PM rosetta@home Started upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:20:21 PM rosetta@home Finished upload of lr8_seq_score12_ss5.0_rlbd_2cmx_IGNORE_THE_REST_DECOY_14281_2594_0_0
7/26/2009 12:21:34 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:21:34 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:21:56 PM Project communication failed: attempting access to reference site
7/26/2009 12:21:57 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:21:59 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:22:59 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:22:59 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:23:21 PM Project communication failed: attempting access to reference site
7/26/2009 12:23:22 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:23:24 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:24:24 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:24:24 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:25:15 PM rosetta@home Scheduler request completed: got 1 new tasks
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:25:17 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_1.86_windows_x86_64.exe: HTTP error
7/26/2009 12:28:24 PM rosetta@home Temporarily failed download of minirosetta_database_rev31588.zip: HTTP error
7/26/2009 12:28:24 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:28:24 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:28:25 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:28:46 PM Project communication failed: attempting access to reference site
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of relax_options_lr8_mmbend_yfsong: connect() failed
7/26/2009 12:28:46 PM rosetta@home Temporarily failed download of score12_mmbend_yf.wts: connect() failed
7/26/2009 12:28:46 PM rosetta@home Started download of boinc_rb1_2ci2.pdb
7/26/2009 12:28:46 PM rosetta@home Started download of lr8_2ci2.out.zip
7/26/2009 12:28:47 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:29:39 PM rosetta@home Finished download of boinc_rb1_2ci2.pdb
7/26/2009 12:29:39 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:30:01 PM Project communication failed: attempting access to reference site
7/26/2009 12:30:01 PM rosetta@home Temporarily failed download of yfsong_lr8_mmbend.zip: connect() failed
7/26/2009 12:30:02 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:30:02 PM rosetta@home [error] File minirosetta_1.86_windows_x86_64.exe has wrong size: expected 9338880, got 0
7/26/2009 12:30:02 PM rosetta@home Started download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home Finished download of minirosetta_1.86_windows_x86_64.exe
7/26/2009 12:31:23 PM rosetta@home [error] File minirosetta_database_rev31588.zip has wrong size: expected 29091359, got 0
7/26/2009 12:31:23 PM rosetta@home Started download of minirosetta_database_rev31588.zip
7/26/2009 12:33:05 PM rosetta@home Finished download of lr8_2ci2.out.zip
7/26/2009 12:33:05 PM rosetta@home [error] File yfsong_lr8_mmbend.zip has wrong size: expected 143, got 0
7/26/2009 12:33:05 PM rosetta@home Started download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:06 PM rosetta@home Finished download of yfsong_lr8_mmbend.zip
7/26/2009 12:33:08 PM rosetta@home [error] File relax_options_lr8_mmbend_yfsong has wrong size: expected 90, got 0
7/26/2009 12:33:08 PM rosetta@home Started download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home Finished download of relax_options_lr8_mmbend_yfsong
7/26/2009 12:33:09 PM rosetta@home [error] File score12_mmbend_yf.wts has wrong size: expected 413, got 0
7/26/2009 12:33:09 PM rosetta@home Started download of score12_mmbend_yf.wts
7/26/2009 12:33:10 PM rosetta@home Finished download of score12_mmbend_yf.wts
7/26/2009 12:35:42 PM rosetta@home Finished download of minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Signature verification error for minirosetta_database_rev31588.zip
7/26/2009 12:35:42 PM rosetta@home [error] Checksum or signature error for minirosetta_database_rev31588.zip
7/26/2009 12:39:04 PM rosetta@home update requested by user
7/26/2009 12:39:07 PM rosetta@home Sending scheduler request: Requested by user.
7/26/2009 12:39:07 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:39:29 PM Project communication failed: attempting access to reference site
7/26/2009 12:39:30 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:39:32 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:40:33 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:40:33 PM rosetta@home Reporting 1 completed tasks, requesting new tasks
7/26/2009 12:41:33 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:45:40 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:45:40 PM rosetta@home Requesting new tasks
7/26/2009 12:46:02 PM Project communication failed: attempting access to reference site
7/26/2009 12:46:03 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:46:05 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:47:05 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:47:05 PM rosetta@home Requesting new tasks
7/26/2009 12:47:27 PM Project communication failed: attempting access to reference site
7/26/2009 12:47:28 PM Internet access OK - project servers may be temporarily down.
7/26/2009 12:47:30 PM rosetta@home Scheduler request failed: Couldn't connect to server
7/26/2009 12:48:31 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:48:31 PM rosetta@home Requesting new tasks
7/26/2009 12:49:21 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:53:27 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:53:27 PM rosetta@home Requesting new tasks
7/26/2009 12:53:57 PM rosetta@home Scheduler request completed: got 0 new tasks
7/26/2009 12:58:08 PM rosetta@home Sending scheduler request: To fetch work.
7/26/2009 12:58:08 PM rosetta@home Requesting new tasks
7/26/2009 12:58:49 PM rosetta@home Scheduler request completed: got 0 new tasks
I'm now out of Rosetta@home workunits that aren't waiting for uploads to complete, so I'll have the computer do workunits for other BOINC projects for a while.
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P . P . L . Joined: Aug 20 06 Posts: 365 ID: 105843 Credit: 361,915 RAC: 771
...
Also, note the failure to download all of a 1.86 workunit.
...
Yeah, the same for me here. Hours and hours of Problem uploading the results of a finished task, then downloads for a new minirotetta 1.86 started, but either the expected database file was 0 bytes, or there was a signature error.
By the way, there was no note on the homepage, that minirosetta had been updated to Rev. 1.86. I just hope that the site wasn't hacked...
And today, I got not one new task, neither in the office nor at home. Strange... rosetta seems to be on vacancy :-)
____________
I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.
I've just noticed that none of my systems are getting new work units. A few have just run out of work units. I reinstalled the current boinc on one system and tried again, and the servers would still not supply any new work units. I'm happy (not really) to read that this appears to be happening to others, not just me.
It's happening here too. I've received nothing since Saturday. Tonight I received 8 and that was it.
27-Jul-2009 08:02:53 [---] Preferences limit disk usage to 0.58GB
27-Jul-2009 08:08:54 [rosetta@home] Aborting task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0: exceeded disk limit: 343.49MB > 286.10MB
27-Jul-2009 08:08:55 [rosetta@home] Computation for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 finished
27-Jul-2009 08:08:55 [rosetta@home] Output file lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0_0 for task lr8_seq_score12_ss5.0_rlbd_1unr_IGNORE_THE_REST_DECOY_14281_3781_0 absent
I'm not sure how the disk limit was exceeded here, 286.10MB != 0.58GB.
____________
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Mod.Sense Forum moderator Project administrator Joined: Aug 22 06 Posts: 2397 ID: 106194 Credit: 0 RAC: 0
alpha, the .58GB is your overall BOINC preference. Which is then possibly divided across several projects. But the actual failure message is specific to the task. The tasks have a failsafe which kicks in if abnormally large amounts of output are being produced. This appears to be what caused the task to end... odd then that it would say the file was absent. Such mannar of odd things are why your reports in these threads are useful. Thank you.
____________ Rosetta Moderator: Mod.Sense
All came up with:
Outcome Client error
Client State Compute error
Exit status -1073741819 (0xc0000005)
Al of them crashed with unhandeled exception error in full atom mode
Windows Vista Ultimate 64
Kaspersky Internet Security
minirosetta_1.88_windows_x86_64.exe is build without signature.
On my sistem is jailed in "bad applications", execution forbidden.
____________
I'm getting a lot of 1.88 WUs with compute errors after zero time. They have the error message: "ERROR: Option matching -detect_disulf not found in command line top-level context"
Thu 30 Jul 2009 12:48:21 EST|rosetta@home|Output file lr8_B_seq_score12_ss5.0_rlbd_1wdv_IGNORE_THE_REST_DECOY_14598_759_0_0 for task absent
================================================================================
Edit // I just found another on my 3ghz rig same error as others.
Same here
http://boinc.bakerlab.org/rosetta/result.php?resultid=269063471
http://boinc.bakerlab.org/rosetta/result.php?resultid=269061152
http://boinc.bakerlab.org/rosetta/result.php?resultid=268941898
http://boinc.bakerlab.org/rosetta/result.php?resultid=269012124
____________
most of 1.88 wu failed at start up, only 1 on my pc (linux) is working
I have 1 1.87 wich try to upload but can't.
There is very difficult to download new wu but also same difficult to upload when wu has successfully ended: can't link to server (lot of http error )
____________
30.07.2009 13:17:25 rosetta@home Started upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:08 Project communication failed: attempting access to reference site
30.07.2009 13:20:08 rosetta@home Temporarily failed upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0: HTTP error
30.07.2009 13:20:08 rosetta@home Backing off 11 min 28 sec on upload of lr8_mmbend_rlbd_2o7k_IGNORE_THE_REST_DECOY_14593_229_0_0
30.07.2009 13:20:10 Internet access OK - project servers may be temporarily down.
Tried to upload ths WU for about an hour now without success
All my 3 computers
Windows vista ultimate 64
Windows Server 2008 64
Linux Fedora 9 64
have a lot of errors:
--- begin ---
<core_client_version>6.6.36</core_client_version>
<![CDATA[
<message>
Funzione non corretta. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-30 10:38:12:] :: BOINC:: Initializing ... ok.
[2009- 7-30 10:38:12:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulf not found in command line top-level context
What's the point of having a Rosetta Application Version Release Log if you Forum moderator
Project administrator
Project developer
Project scientist
don't post to it?
ERROR: Option matching -detect_disulf not found in command line top-level context
ID: 62646 | Rating: 0 | rate:
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Yifan Song Forum moderator Project administrator Project developer Project scientist Joined: May 26 09 Posts: 41 ID: 318024 Credit: 0 RAC: 0
Sorry about these errors.
A lot of the errors (especially the disulfide ones) are due to the jobs submitted a while ago that need the new flags from the latest update. And after the reversion, those jobs are no longer valid.
Our file server is a bit hammered right now, so it's hard to change those job status as well.
We have found the bug that causes the slowing down of the code though, and we have tested the bug fix on our alpha server. Thus we are updating the program.
Massive network traffic is still expected due to the version update. Hopefully everything will be stabilized in a few days.
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P . P . L . Joined: Aug 20 06 Posts: 365 ID: 105843 Credit: 361,915 RAC: 771
Here's another one that failed with zero time, hasn't been returned yet.
If these jobs are not valid, then where was the command from RAH to have the system delete them?
How do you tell which ones were invalid and can be aborted and which ones will run ok?
I still have 3 lr8 and 3 lr13 tasks to complete still at 4 hrs a piece.
Hello Greg,
The error reports above are all about: lrX_XX_seq_score_...... Wu's.
The lrX_XX_mmbend_rlbd_ ..... Wu's are not mentioned in the error reports above.
Be aware: it is sometimes difficult to download new Wu's.
Here are some more with the same error.
That's 7 from the last time and 3 more for a total of 10 tasks that crashed with 0 time. I think these are part of that batch of disulf tasks that had a code problem.