Posts by ronultra

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77501)
Posted 23 Sep 2014 by ronultra
Post:
Can you look in Boinc Manager at Tools / Computing preferences... and under the "disk and memory usage" tab confirm that "Leave applications in memory while suspended" is ticked. This could be why it isn't finding a last checkpoint and throwing up that error message. Worth a try.


It was not checked. The system I run BIONIC on is mainly a gaming rig and it is usually up 24x7. I use AVG free as my virus scanner and have exempted the BIONIC directory from scanning as well as set it up for full control in the Win7 firewall (yeah, I know, but it’s what I have). I have changed the "Use at most xx% CPU time" to 100% and have “Use at most xx% CPU time” at 70%. I tried “right-click on a minirosetta task and go to "Set Priority"” and when I right click nothing happens. Absolutely nothing. I would expect a shortcut menu but am not getting one.

Memory usage is currently set at 40% when in use and 90% when idle. I have set aside 30gig for BIONIC (sounds like it may be a bit high) and no more than 20% of total disk. I can drop that if you think it would help. Below is a sample of the log from when I last posted. Looks like it “might” have worked itself out, at least I’m not getting the “If this happens repeatedly you may need to reset the project” dialog right now.

BTW, I really appreciate your assistance, this is a new project for me and I wanted to get it running right.

9/22/2014 11:29:42 PM | rosetta@home | Sending scheduler request: To fetch work.
9/22/2014 11:29:42 PM | rosetta@home | Requesting new tasks for CPU and ATI
9/22/2014 11:29:45 PM | rosetta@home | Scheduler request completed: got 32 new tasks
9/22/2014 11:29:47 PM | rosetta@home | Started download of EHEE1.0_1L-5E-2L-13H-3L-8E-3L-8E-1L_1-2.P.-1_2-3.A.0_0033_0002_fragments_data.zip
9/22/2014 11:29:47 PM | rosetta@home | Started download of hb80_RTRP_H1cons_data.zip
9/22/2014 11:29:50 PM | rosetta@home | Finished download of EHEE1.0_1L-5E-2L-13H-3L-8E-3L-8E-1L_1-2.P.-1_2-3.A.0_0033_0002_fragments_data.zip
9/22/2014 11:29:50 PM | rosetta@home | Finished download of hb80_RTRP_H1cons_data.zip
9/22/2014 11:29:50 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_FLAGS
9/22/2014 11:29:50 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta.zip
9/22/2014 11:29:51 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_FLAGS
9/22/2014 11:29:51 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta.zip
9/22/2014 11:29:51 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.3mers.gz
9/22/2014 11:29:51 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.14mers.gz
9/22/2014 11:29:54 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.3mers.gz
9/22/2014 11:29:54 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.12mers.gz
9/22/2014 11:29:55 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.14mers.gz
9/22/2014 11:29:55 PM | rosetta@home | Started download of 1409212_Exp01-162_new_sequences_426_148238_bare_0001_2_9_0004_data.zip
9/22/2014 11:29:57 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.12mers.gz
9/22/2014 11:29:57 PM | rosetta@home | Finished download of 1409212_Exp01-162_new_sequences_426_148238_bare_0001_2_9_0004_data.zip
9/22/2014 11:29:57 PM | rosetta@home | Started download of hb80_RTRP_H7cons_data.zip
9/22/2014 11:29:57 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.5mers.gz
9/22/2014 11:30:00 PM | rosetta@home | Finished download of hb80_RTRP_H7cons_data.zip
9/22/2014 11:30:00 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.5mers.gz
9/22/2014 11:30:00 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.4mers.gz
9/22/2014 11:30:00 PM | rosetta@home | Started download of 1409210_Exp01-162_new_sequences_096_148496_bare_0001_0_2_0009_data.zip
9/22/2014 11:30:03 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.4mers.gz
9/22/2014 11:30:03 PM | rosetta@home | Finished download of 1409210_Exp01-162_new_sequences_096_148496_bare_0001_0_2_0009_data.zip
9/22/2014 11:30:03 PM | rosetta@home | Started download of EHEE1.0_1L-6E-3L-13H-2L-7E-3L-6E-1L_1-2.P.0_2-3.A.1_0038_0001_fragments_data.zip
9/22/2014 11:30:03 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.9mers.gz
9/22/2014 11:30:05 PM | rosetta@home | Finished download of EHEE1.0_1L-6E-3L-13H-2L-7E-3L-6E-1L_1-2.P.0_2-3.A.1_0038_0001_fragments_data.zip
9/22/2014 11:30:05 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_h003___robetta_FLAGS
9/22/2014 11:30:07 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_t000___robetta_t000_.200.9mers.gz
9/22/2014 11:30:07 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_h003___robetta_FLAGS
9/22/2014 11:30:07 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_h003___robetta.zip
9/22/2014 11:30:07 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_h003___robetta_h003_.200.3mers.gz
9/22/2014 11:30:08 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_h003___robetta.zip
9/22/2014 11:30:08 PM | rosetta@home | Started download of rb_09_22_50070_95995_ab_stage0_h003___robetta_h003_.200.14mers.gz
9/22/2014 11:30:09 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_h003___robetta_h003_.200.3mers.gz
9/22/2014 11:30:09 PM | rosetta@home | Started download of 1409210_Exp01-162_new_sequences_092_148496_bare_0001_6_0_0008_data.zip
9/22/2014 11:30:12 PM | rosetta@home | Finished download of rb_09_22_50070_95995_ab_stage0_h003___robetta_h003_.200.14mers.gz
9/22/2014 11:30:12 PM | rosetta@home | Finished download of 1409210_Exp01-162_new_sequences_092_148496_bare_0001_6_0_0008_data.zip
9/22/2014 11:30:12 PM | rosetta@home | Started download of 1409212_Exp01-162_new_sequences_396_148496_bare_0001_5_0_0005_data.zip
9/22/2014 11:30:12 PM | rosetta@home | Started download of tj_9_17_2helix_lowrise_X24_2_26_3_ct0_fb_fragments_fold_data.zip
9/22/2014 11:30:14 PM | rosetta@home | Finished download of 1409212_Exp01-162_new_sequences_396_148496_bare_0001_5_0_0005_data.zip
9/22/2014 11:30:14 PM | rosetta@home | Started download of 1409203_20140916_Exp05-008_sequence_optimization_folding_562_EHHEHEH_080_4_0005_3_0002_fragments_data.zip
9/22/2014 11:30:17 PM | rosetta@home | Finished download of tj_9_17_2helix_lowrise_X24_2_26_3_ct0_fb_fragments_fold_data.zip
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77495)
Posted 22 Sep 2014 by ronultra
Post:
Well, the changes I have made didnt fix the issue. I have reduced the number of processors available, increased the memory allocated to the BIONIC software, and have increased the percentage of processer time to 75%. Still I get this:


9/22/2014 1:11:56 AM | rosetta@home | Task smp.sc0_input_0489_0001_ss1_2_ss2_1_ss3_3_ss4_3_ss5_4_0001_0002_fragments_fold_204843_161_2 exited with zero status but no 'finished' file
9/22/2014 1:11:56 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 2:39:48 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 2:39:48 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 2:58:02 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 2:58:02 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 3:08:18 AM | rosetta@home | Sending scheduler request: To report completed tasks.
9/22/2014 3:08:18 AM | rosetta@home | Reporting 1 completed tasks
9/22/2014 3:08:18 AM | rosetta@home | Requesting new tasks for ATI
9/22/2014 3:08:21 AM | rosetta@home | Scheduler request completed: got 0 new tasks
9/22/2014 3:22:26 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 3:22:26 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 3:30:19 AM | rosetta@home | Sending scheduler request: To fetch work.
9/22/2014 3:30:19 AM | rosetta@home | Requesting new tasks for ATI
9/22/2014 3:30:20 AM | rosetta@home | Scheduler request completed: got 0 new tasks
9/22/2014 3:33:51 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 3:33:51 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 3:42:29 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 3:42:29 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 4:01:07 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 4:01:07 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 4:19:18 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 4:19:18 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 4:31:44 AM | rosetta@home | Task ebo.m2H_7E-1L-15H-2L-3E-11M-3E_0017_0006_0001.B_fragments_fold_209529_96_0 exited with zero status but no 'finished' file
9/22/2014 4:31:44 AM | rosetta@home | If this happens repeatedly you may need to reset the project.
9/22/2014 4:33:25 AM | rosetta@home | Computation for task rb_09_18_49889_95932__t000__1_C1_SAVE_ALL_OUT_IGNORE_THE_REST_209467_2036_0 finished
9/22/2014 4:33:25 AM | rosetta@home | Starting task EHEE1.0_1L-7E-2L-15H-2L-8E-3L-7E-1L_1-2.P.-1_2-3.A.0_0036_0001_fragments_fold_209790_200_0


And it goes on and on, pages of it. Any other suggestions folks?

Ron
3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77466)
Posted 15 Sep 2014 by ronultra
Post:

Copied and pasted from an earlier answer:

On Rosetta this is usually solved by increasing the "use at most xxx% of CPU time" setting to 100. You may then want to reduce the "on multiprocessors, use at most xxx% of the processors" to something less than currently set. Most people find this handles the temperature regulation concerns (that the cpu throttling was designed to address) perfectly.

Another possible cause are virus scanners; most folks exclude BOINC from those scans or set it to run only when BOINC isn't active.

An explanation and more possible causes can be found here: BOINC FAQ Service

Please know that this only becomes a fatal error when it occurs 100 times to a particular task; at that point BOINC assumes the task will never be able to finish and gives up on it, ending it as a client error. If you see this message only occasionally it is safe to ignore it.


Best,
Snags



Thanks, I was unable to find that answer in the 806 previous posts. :)

I have found tht if I set the processor usage to 100% that accessing my system is nearly impossible, takes forever to get the loging screen to come up because naturally 100% of the processor is being used. Currently I have 50% of my available processors (3 of 6) running Bionic, plus my GPU when the system is not in use. Seems most of my WU's are being crunched by the GPU, which honestly dones not bother me at all.

I have set my anti-virus to bypass the Bionic folder during scans, with luck that is the issue. I also added an exception in the Win7 firewall for it, time will tell if this is the fix I am looking for.

Ron
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 77459)
Posted 14 Sep 2014 by ronultra
Post:
Greetings,

I am fairly new to rosetta (not new to BIONIC) and have noted the error I am getting in several places in this thread, but no answers. Here is the error (not mine, copied from another user but its the same error I am getting):

Task binding_helix_0472_disulf1_1_disulf2_2_disulf3_4_disulf4_2_disulf5_1_0004_abinitio_SAVE_ALL_OUT_73462_2878_0 exited with zero status but no 'finished' file
3/29/2013 8:25:05 AM | rosetta@home | If this happens repeatedly you may need to reset the project.

I have reset the project twice as the software suggests and this has not fixed the problem. I have also changed the WU swap time from 60 minutes to 24 hours, no effect, still getting the same error. I am getting credit for the CPU time, but that is not the reason I run BIONIC, I am trying to help out. If my WU's are not producing then I need to find out how to start providing valid results. Any suggestions (nice ones please) would be appreciated.

Ron






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