Posts by Kompakki

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103826) Posted 14 Dec 2021 by Kompakki Post: Can not say what is reason for that, but usually on my machines one Python (Virtualbox) work unit has taken 7.5GB of RAM.
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 103822) Posted 14 Dec 2021 by Kompakki Post: I have encountered some virtualbox tasks that takes over a day to run. When task takes over a day to run, I thought that it is stuck in some way and aborted the task. Other thought is that there is some problem in my environment. Does virtualbox tasks usually take over a day to run? Is there some problem in my environment? One longlasting task is as follows: Task 1453463295 Name aagb-mALA_pp-mHPR-mACPenC13T-B3PHE_1_2611271_1_0 Workunit 1297021861 Created 8 Dec 2021, 21:03:21 UTC Sent 9 Dec 2021, 13:51:23 UTC Report deadline 12 Dec 2021, 13:51:23 UTC Received 11 Dec 2021, 12:36:28 UTC Server state Over Outcome Computation error Client state Aborted by user Exit status 203 (0x000000CB) EXIT_ABORTED_VIA_GUI Computer ID 2401895 Run time 1 days 2 hours 45 min 39 sec CPU time 25 min 55 sec Validate state Invalid Credit 14.00 Device peak FLOPS 4.90 GFLOPS Application version rosetta python projects v1.03 (vbox64) x86_64-pc-linux-gnu Peak working set size 1,185.08 MB Peak swap size 2,565.54 MB Peak disk usage 7,979.68 MB Computer: IP address Show IP address Domain name huono3-desktop Local Standard Time UTC +2 hours Created 17 Nov 2015, 17:05:25 UTC Total credit 4,147,395 Average credit 262.50 Cross project credit BOINCstats.com Free-DC CPU type GenuineIntel Intel(R) Pentium(R) CPU G3258 @ 3.20GHz [Family 6 Model 60 Stepping 3] Number of processors 2 Coprocessors --- Operating System Linux Ubuntu Ubuntu 20.04.3 LTS [5.4.0-91-generic\|libc 2.31 (Ubuntu GLIBC 2.31-0ubuntu9.2)] BOINC version 7.16.6 Memory 7639 MB Cache 3072 KB Swap space 3905 MB Total disk space 106.16 GB Free Disk Space 83.67 GB Measured floating point speed 4895.56 million ops/sec Measured integer speed 111568.63 million ops/sec Average upload rate 160.08 KB/sec Average download rate 2790.46 KB/sec Average turnaround time 2.77 days Application details Show Tasks 27 Number of times client has contacted server 5500 Last time contacted server 14 Dec 2021, 12:32:40 UTC Fraction of time BOINC is running 83.79% While BOINC is running, fraction of time computing is allowed 100.00% While is BOINC running, fraction of time GPU computing is allowed 100.00% Task duration correction factor 1 virtual box version: 6.1.26
3) Message boards : Number crunching : Rosetta 4.1+ and 4.2+ (Message 99227) Posted 3 Oct 2020 by Kompakki Post: I want to inform software developers of R@H and also need some help with tasks which failed. During the last few days one of my hosts has failed about 500 tasks. For example tasks bmpr2_att3_9_SAVE_ALL_OUT_IGNORE_THE_REST_2fq8je7s_1013915_3_0 (https://boinc.bakerlab.org/rosetta/result.php?resultid=1271705979) cd28_1yjd_graft_v1_SAVE_ALL_OUT_IGNORE_THE_REST_0qk3jo8r_1013410_2_0 (https://boinc.bakerlab.org/rosetta/result.php?resultid=1271706673) both failed with error: Computation error. One of the stderr messages looks like: <core_client_version>7.9.3</core_client_version> <![CDATA[ <message> process got signal 11</message> <stderr_txt> command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.20_x86_64-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--covid_at3_design_boinc_v1.xml @bmpr2_att3_flags -in:file:silent bmpr2_att3_9_SAVE_ALL_OUT_IGNORE_THE_REST_2fq8je7s.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip bmpr2_att3_9_SAVE_ALL_OUT_IGNORE_THE_REST_2fq8je7s.zip @bmpr2_att3_9_SAVE_ALL_OUT_IGNORE_THE_REST_2fq8je7s.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1429430 Using database: database_357d5d93529_n_methyl/minirosetta_database </stderr_txt> ]]> Host details: AMD Phenom(tm) II X6 1090T, Linux Ubuntu, Ubuntu 18.04.5 LTS [5.4.0-48-generic\|libc 2.27 (Ubuntu GLIBC 2.27-3ubuntu1.2)]. Other Linux hosts have successfully completed tasks with name starting like bmpr2.... or cd28.... . What's wrong with that one computer? Why does it fail tasks?