Posts by Khali

1) Message boards : Number crunching : Validate errors (Message 76585) Posted 3 Apr 2014 by Khali Post: I am new to Rosetta and I am getting a lot of Invalid tasks reported as Validate errors. I did a test run of Rosetta a few weeks ago and about 30% of the tasks I ran then were Validate errors. Some of my team mates said it might be because of my mild over clock. Since we were all crunching for a team event on another project I had not had a chance to run any more Rosetta tasks until yesterday. I removed my over clock and tried again. Validate errors are not as prevalent as they were but I am still getting them. Here is Rosetta's explanation of a Validate error. Validate error - The task was reported but could not be validated, typically because the output files were lost on the server. I can only conclude that I am spending three hours plus on each task only to have 25 to 30 percent of them get lost on your server. Not acceptable. This needs fixed asap. Task ID 651174635 Name gr040214_ama1_longee_newhair377_relax_SAVE_ALL_OUT_157229_40_0 Workunit 591389920 Created 3 Apr 2014 11:32:15 UTC Sent 3 Apr 2014 11:35:21 UTC Received 3 Apr 2014 14:05:41 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 1730267 Report deadline 13 Apr 2014 11:35:21 UTC CPU time 2409.047 stderr out <core_client_version>7.2.42</core_client_version> <![CDATA[ <stderr_txt> [2014- 4- 3 8:22: 1:] :: BOINC:: Initializing ... ok. [2014- 4- 3 8:22: 1:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.48_windows_x86_64.exe -out:file:silent default.out -in:file:s 00001.pdb -frag3 00001.200.3mers -in:file:native 00001.pdb -frag9 00001.200.9mers -silent_gz 1 -ex2aro 1 -relax::default_repeats 15 -in:file:fullatom 1 -run:protocol relax -ex1 1 -in:file:boinc_wu_zip gr040214_ama1_longee_newhair377_data.zip -out:file:silent default.out -silent_gz -mute all -detect_disulf True -in:file:native 00001.pdb -in:file:fullatom -in:file:s 00001.pdb -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1434278 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_b14204d.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/gr040214_ama1_longee_newhair377_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 99 starting structures 2408.23 cpu seconds This process generated 99 decoys from 99 attempts ====================================================== BOINC :: WS_max 4.39628e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 25.3788504634809 Granted credit 0 application version 3.48