Posts by fcbrants

1) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 90035)
Posted 19 Dec 2018 by fcbrants
Post:
I saw a similar group of tasks that timed out. The system is robust & performed as expected. After the tasks timed out, they were re-assigned.

My thoughts:

1. Don't worry about micro-managing Rosetta - there WILL be errors every now & again.
2. Keep an eye on the prize: understanding how proteins work, how to synthesize them to help cure Cancer, AIDS, etc.

Cheers,

Franko

Sorry Guys
these are my time, my money and my costs
So i will stop Rosetta now
2) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89985)
Posted 11 Dec 2018 by fcbrants
Post:
I just checked my logs back to 12/10 15:00 CST & it looks like I've been uploading continuously, uninterrupted. Win64 Boinc 7.12.1.

Have been unable to upload work units since yesterday (two have timed out). Keeps telling me "project backoff."

I'm on an iMac Pro 2017 running macOS 10.14 Mojave and BOINC 7.12
3) Message boards : Number crunching : Rosetta is not playing nice with my other projects. (Message 89859)
Posted 9 Nov 2018 by fcbrants
Post:
Good to know, thanks!!

Franko


Do these Rosetta WU's Need to have a deadline that is very short?


Yes. R@h tasks have deadlines that reflect the needs of the project and the specific tasks. 3 days is the shortest deadline used by R@h at this point.
4) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89845)
Posted 6 Nov 2018 by fcbrants
Post:
Got it, thanks!!

I spent some more time with this machine running at 100% (32 Rosetta tasks + 1 SETI task on the GPU) & it DID hang occasionally, which would explain this error.

As this is also my daily driver, I backed the "Use at most CPU's" option down to 93.75% (30 of 32 threads) & I haven't seen the problem since.

Problem resolved.

Thanks!!

Franko

Dang it, I'm still getting the same error.

I tried to find the file app_control.cpp, but couldn't find it - is this a file I can edit?

Thanks!!

Franko

[snip]

Files with the .cpp extension are usually C++ source files, which can be edited. However, doing so is not useful unless:

5) Message boards : Number crunching : Rosetta is not playing nice with my other projects. (Message 89836)
Posted 4 Nov 2018 by fcbrants
Post:
I've noticed the same thing & it looks like it's due to Rosetta WU's having Very short deadlines. I'm running SETI & Rosetta - new WU's from Rosetta have a deadline of 11/7 (3 days from now), while the new SETI WU's have a deadline of 12/27 (~ < 2 months).

Do these Rosetta WU's Need to have a deadline that is very short?

Franko
6) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89834)
Posted 4 Nov 2018 by fcbrants
Post:
Dang it, I'm still getting the same error.

I tried to find the file app_control.cpp, but couldn't find it - is this a file I can edit?

Thanks!!

Franko

The error message is displayed by the BOINC Client.
I think it is just a BOINC Client timing issue that they have declared "fixed" several times.
I don't think it is ever a problem, just annoying.

client/app_control.cpp

// Check for finish files every 10 sec.
// If we already found a finish file, abort the app;
// it must be hung somewhere in boinc_finish();
//
static double last_finish_check_time = 0;
if (gstate.clock_change || gstate.now - last_finish_check_time > 10) {
last_finish_check_time = gstate.now;
for (i=0; i<active_tasks.size(); i++) {
ACTIVE_TASK* atp = active_tasks[i];
if (atp->task_state() == PROCESS_UNINITIALIZED) continue;
if (atp->finish_file_time) {
// process is still there 10 sec after it wrote finish file.
// abort the job
atp->abort_task(EXIT_ABORTED_BY_CLIENT, "finish file present too long"); <<<<<<<<<<<< line 140
} else if (atp->finish_file_present()) {
atp->finish_file_time = gstate.now;
}
}
}
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89830)
Posted 3 Nov 2018 by fcbrants
Post:
Thanks, but after looking at the affected tasks, it looks like the result was discarded & no credit granted.

That said, it's looking more & more like this was a problem with my Dell PERC H710P RAID card. The machine was sluggish as hell with the disk cache write back enabled & everything Really went south (machine became unbootable) after I tried a backup. Fiddled with it for days, finally pulled the backup battery off the card, which disabled the cache & let it sit overnight. Next morning, reinstalled the card, and back on go. Jacked my "use at most" CPU's back up to 100% & the machine is still snappy. Back to Munching & Crunching ;)

Thanks for looking this up for me, if I run into problems again, I will try increasing this timeout.

Franko


The error message is displayed by the BOINC Client.
I think it is just a BOINC Client timing issue that they have declared "fixed" several times.
I don't think it is ever a problem, just annoying.

client/app_control.cpp

// Check for finish files every 10 sec.
// If we already found a finish file, abort the app;
// it must be hung somewhere in boinc_finish();
//
static double last_finish_check_time = 0;
if (gstate.clock_change || gstate.now - last_finish_check_time > 10) {
last_finish_check_time = gstate.now;
for (i=0; i<active_tasks.size(); i++) {
ACTIVE_TASK* atp = active_tasks[i];
if (atp->task_state() == PROCESS_UNINITIALIZED) continue;
if (atp->finish_file_time) {
// process is still there 10 sec after it wrote finish file.
// abort the job
atp->abort_task(EXIT_ABORTED_BY_CLIENT, "finish file present too long"); <<<<<<<<<<<< line 140
} else if (atp->finish_file_present()) {
atp->finish_file_time = gstate.now;
}
}
}
8) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89805)
Posted 30 Oct 2018 by fcbrants
Post:
This machine uses two SSD's in RAID 0 on a Dell PERC H710 RAID card with 1 GB of RAM (which could be the source of the problem), with the write policy set to "Write Back", which is defined as, "In Write Back mode the controller sends a data transfer completion signal to the host when the controller cache has received all of the data in a transaction."

For some reason, Windows Explorer (Exploder?) hangs when this machine is NOT under load, AND I have several windows explorer windows open.

Is there a way to increase this timeout to accommodate this machine's peculiarities?

Thanks!!

Franko

I get the same error (and not only on Rosetta@home. I think my hard disk is too busy to output a 'finished file' on time for Boinc.

That is an interesting thought. I have not seen that error for a long time, and I now use only SSDs on all my machines.
Also, I usually use a write-cache (or ramdisk), so most of my writes and even reads are from main memory. I think that does it.
9) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 89779)
Posted 26 Oct 2018 by fcbrants
Post:
Hello!!

I'm getting an error, "<message>finish file present too long</message> after a WU has completed.

Win 7 SP2, Fully up2date 64 Bit, BOINC 7.12.1 x64, Rosetta Mini v3.78 windows_intelx86

This machine is my "daily driver" & I use it for other non-demanding tasks.

I WAS running BOINC on 100% of the CPU's & the machine DID get sluggish at times.

http://boinc.bakerlab.org/show_host_detail.php?hostid=1606827

http://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

I've searched this forum & couldn't find an answer...

This appears to be an old issue that's ostensibly been resolved, and it hasn't been discussed since 2016:

https://www.google.com/search?ei=ApjHW7A955e2BeO1tPAL&q=%22finish+file+present+too+long%22&oq=%22finish+file+present+too+long%22&gs_l=psy-ab.3..0i7i30.967651.971417..972092...0.0..0.54.103.2......0....1..gws-wiz.......0i71j0i22i30.6CEhGn3jHEY


<core_client_version>7.12.1</core_client_version>
<![CDATA[
<message>
finish file present too long</message>

I'm backing the "Use at Most" CPU's to 93.75% (30 of 32 threads, 15/16 cores) & setting the project to No New Tasks until I can get this resolved.

I did find messages in the error log:

10/22/2018 7:47:43 AM | Rosetta@home | Task jelva126_mut_5_9tcssm_73_K_0251_0001_0006_fragments_relax_SAVE_ALL_OUT_700558_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_relax_SAVE_ALL_OUT_700549_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva76_mut_5_4tcssm_73_K_0251_0001_0006_fragments_fold_SAVE_ALL_OUT_700633_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG99_DEHCFABG_s00880005aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700443_272_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva2_mut_5_10tcssm_61_K_0251_0001_0005_fragments_fold_SAVE_ALL_OUT_700582_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG62_CDEFGBAH_s006200026a3c1c99_0001_0001_fragments_fold_SAVE_ALL_OUT_700403_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva117_mut_5_8tcssm_73_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700548_115_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG55_BEDGHCFA_s00450008aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700395_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG88_DEFGBAHC_s008200032b122311_0001_0001_fragments_fold_SAVE_ALL_OUT_700431_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva130_mut_5_9tcssm_73_K_0251_0001_0010_fragments_fold_SAVE_ALL_OUT_700563_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ54_IGGH_A_B_C_F_G_D_7delE_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700139_290_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700549_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG60_BGDEHCFA_s005600026a3c1c99_0002_0001_fragments_fold_SAVE_ALL_OUT_700401_299_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva112_mut_5_8tcssm_73_K_0251_0001_0002_fragments_fold_SAVE_ALL_OUT_700543_164_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva21_mut_5_6tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700573_189_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva94_mut_5_6tcssm_73_K_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700653_188_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva25_mut_5_8tcssm_61_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700577_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG22_ADEHCFGB_s00150009aa336a56_0001_0001_fragments_fold_SAVE_ALL_OUT_700323_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva3_mut_5_10tcssm_61_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700593_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG240_GDEFCHAB_s015900036a3c1c99_0003_0001_fragments_fold_SAVE_ALL_OUT_700335_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva14_mut_5_4tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700565_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva15_mut_5_4tcssm_61_K_0251_0001_0009_fragments_fold_SAVE_ALL_OUT_700566_247_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva78_mut_5_4tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700635_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ73_IGGH_A_B_C_F_G_D_E_8_0251_0008_fragments_fold_SAVE_ALL_OUT_700160_329_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.

Most of the tasks mentioned in the error log do NOT show up here:

http://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

But this one does: http://boinc.bakerlab.org/result.php?resultid=1036002868

Please let me know what I can do to help troubleshoot the problem.

Thanks!!

Franko
10) Message boards : Number crunching : Minirosetta 3.73-3.78 (Message 89755)
Posted 23 Oct 2018 by fcbrants
Post:
Hello!!

I'm getting an error, "<message>finish file present too long</message> after a WU has completed.

Win 7 SP2, Fully up2date 64 Bit, BOINC 7.12.1 x64, Rosetta Mini v3.78 windows_intelx86

This machine is my "daily driver" & I use it for other non-demanding tasks.

I WAS running BOINC on 100% of the CPU's & the machine DID get sluggish at times.

http://boinc.bakerlab.org/show_host_detail.php?hostid=1606827

http://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

I've searched this forum & couldn't find an answer...

This appears to be an old issue that's ostensibly been resolved, and it hasn't been discussed since 2016:

https://www.google.com/search?ei=ApjHW7A955e2BeO1tPAL&q=%22finish+file+present+too+long%22&oq=%22finish+file+present+too+long%22&gs_l=psy-ab.3..0i7i30.967651.971417..972092...0.0..0.54.103.2......0....1..gws-wiz.......0i71j0i22i30.6CEhGn3jHEY


<core_client_version>7.12.1</core_client_version>
<![CDATA[
<message>
finish file present too long</message>

I'm backing the "Use at Most" CPU's to 93.75% (30 of 32 threads, 15/16 cores) & setting the project to No New Tasks until I can get this resolved.

I did find messages in the error log:

10/22/2018 7:47:43 AM | Rosetta@home | Task jelva126_mut_5_9tcssm_73_K_0251_0001_0006_fragments_relax_SAVE_ALL_OUT_700558_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_relax_SAVE_ALL_OUT_700549_46_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva76_mut_5_4tcssm_73_K_0251_0001_0006_fragments_fold_SAVE_ALL_OUT_700633_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG99_DEHCFABG_s00880005aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700443_272_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva2_mut_5_10tcssm_61_K_0251_0001_0005_fragments_fold_SAVE_ALL_OUT_700582_96_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG62_CDEFGBAH_s006200026a3c1c99_0001_0001_fragments_fold_SAVE_ALL_OUT_700403_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva117_mut_5_8tcssm_73_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700548_115_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG55_BEDGHCFA_s00450008aa336a56_0002_0001_fragments_fold_SAVE_ALL_OUT_700395_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG88_DEFGBAHC_s008200032b122311_0001_0001_fragments_fold_SAVE_ALL_OUT_700431_280_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva130_mut_5_9tcssm_73_K_0251_0001_0010_fragments_fold_SAVE_ALL_OUT_700563_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ54_IGGH_A_B_C_F_G_D_7delE_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700139_290_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva118_mut_5_8tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700549_140_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG60_BGDEHCFA_s005600026a3c1c99_0002_0001_fragments_fold_SAVE_ALL_OUT_700401_299_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva112_mut_5_8tcssm_73_K_0251_0001_0002_fragments_fold_SAVE_ALL_OUT_700543_164_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva21_mut_5_6tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700573_189_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva94_mut_5_6tcssm_73_K_0251_0001_0004_fragments_fold_SAVE_ALL_OUT_700653_188_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva25_mut_5_8tcssm_61_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700577_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG22_ADEHCFGB_s00150009aa336a56_0001_0001_fragments_fold_SAVE_ALL_OUT_700323_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva3_mut_5_10tcssm_61_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700593_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task DSIGG240_GDEFCHAB_s015900036a3c1c99_0003_0001_fragments_fold_SAVE_ALL_OUT_700335_321_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva14_mut_5_4tcssm_61_K_0251_0001_0007_fragments_fold_SAVE_ALL_OUT_700565_226_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva53_mut_5_2tcssm_73_K_0251_0001_0003_fragments_fold_SAVE_ALL_OUT_700608_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva15_mut_5_4tcssm_61_K_0251_0001_0009_fragments_fold_SAVE_ALL_OUT_700566_247_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task jelva78_mut_5_4tcssm_73_K_0251_0001_0008_fragments_fold_SAVE_ALL_OUT_700635_246_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.
10/22/2018 7:47:43 AM | Rosetta@home | Task TJ73_IGGH_A_B_C_F_G_D_E_8_0251_0008_fragments_fold_SAVE_ALL_OUT_700160_329_0 exited with zero status but no 'finished' file
10/22/2018 7:47:43 AM | Rosetta@home | If this happens repeatedly you may need to reset the project.

Most of the tasks mentioned in the error log do NOT show up here:

http://boinc.bakerlab.org/rosetta/results.php?userid=472655&offset=0&show_names=0&state=6&appid=

But this one does: http://boinc.bakerlab.org/result.php?resultid=1036002868

Please let me know what I can do to help troubleshoot the problem.

Thanks!!

Franko
11) Message boards : Number crunching : Results Web Sites (Rosetta and SETI) Virus Alert? (Message 89746)
Posted 22 Oct 2018 by fcbrants
Post:
I just checked again & it appears the problem has been resolved on both the Rosetta and the SETI results pages.

Franko


I received Avast (Windows) Virus Alerts on Both the Rosetta AND the SETI Results web sites:

I can't attach a screenshot, so here's a summary:

http://boinc.bakerlab.org/rosetta/results.php?userid=472655
http://setiathome.berkeley.edu/results.php?userid=521624

Infected with HTML:ChaseBank-A[Phish]

Thanks!!

Franko


me to (Avast)
12) Message boards : Number crunching : Results Web Sites (Rosetta and SETI) Virus Alert? (Message 89744)
Posted 22 Oct 2018 by fcbrants
Post:
I received Avast (Windows) Virus Alerts on Both the Rosetta AND the SETI Results web sites:

I can't attach a screenshot, so here's a summary:

http://boinc.bakerlab.org/rosetta/results.php?userid=472655
http://setiathome.berkeley.edu/results.php?userid=521624

Infected with HTML:ChaseBank-A[Phish]

Thanks!!

Franko
13) Message boards : Number crunching : Minirosetta 3.46 (Message 75509)
Posted 27 Apr 2013 by fcbrants
Post:
I restarted the project last night & ran through a few WU's (stopped taking WU's 4/24/ & restarted 4/27), working only on Rosetta. I checked the task list today (have Not been watching it closely) & found an errored WU. It was sitting in the task list with "Computation Error" & I found its entry in the event log:

Computation for task e6-52-1-46_abinitio_SAVE_ALL_OUT_78312_744_2 finished
Output file e6-52-1-46_abinitio_SAVE_ALL_OUT_78312_744_2_0 for task e6-52-1-46_abinitio_SAVE_ALL_OUT_78312_744_2 absent

It soon spooled off of the task list & was gone.

Hope this helps, feel free to contact me if you need to do any troubleshooting.

My machine:

http://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=1606827

and results:

http://boinc.bakerlab.org/rosetta/results.php?hostid=1606827

and the offending WU:

http://boinc.bakerlab.org/rosetta/result.php?resultid=578113826

Franko






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