Posts by [AF>Libristes]Maeda

1) Message boards : Number crunching : Rosetta 4.0+ (Message 89475) Posted 1 Sep 2018 by [AF>Libristes]Maeda Post: Thanks for tips :) I stopped this project since May on one of my computer (that have a 'on the edge' distro) and just tried your solution. Let's see if all's right now !
2) Message boards : Number crunching : Rosetta 4.0+ (Message 88939) Posted 18 May 2018 by [AF>Libristes]Maeda Post: It may be related, but a workaround has been found on World Community Grid project, which some project have a static link to an (quite) old glibc, and devs says they will rebuilt their apps as soon as possible, as many Linux users with recent kernel will encounter the problem. I didn't do it as it seems to enable again some vulnerabilities...
3) Message boards : Number crunching : Rosetta 4.0+ (Message 88805) Posted 3 May 2018 by [AF>Libristes]Maeda Post: In fact, only the Rosetta 4.07 x86_64 are crashing.
4) Message boards : Number crunching : Rosetta 4.0+ (Message 88800) Posted 2 May 2018 by [AF>Libristes]Maeda Post: Arch Linux on i7-4770, 16 GB RAM. Yesterday I updated Arch. The update included (among others): [2018-04-28 17:33] [ALPM] upgraded glibc (2.26-11 -> 2.27-2) [2018-04-28 17:33] [ALPM] upgraded boinc (7.8.4-1 -> 7.8.4-3) [2018-04-28 17:34] [ALPM] upgraded linux (4.15.15-1 -> 4.16.4-1) After the update, all Rosetta 4.07 x86_64 tasks are failing. For example: https://boinc.bakerlab.org/result.php?resultid=993256201 rosetta_4.07_x86_64-pc-linux-gnu: loadlocale.c:129: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. SIGABRT: abort called Hello, Same with my computer, 4.16.4-1-ARCH, updated on 4/27/2018. Rosetta Mini v3.78 seems to work, but I can't select only this app to avoid errors, please recompile it with last glibc version. command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_4.07_x86_64-pc-linux-gnu -ignore_unrecognized_res 1 -abinitio::fastrelax 1 -ex2aro 1 -abinitio::use_filters false -out:file:silent default.out -abinitio::rsd_wt_loop 0.5 -beta 1 -abinitio::detect_disulfide_before_relax 1 -relax::minimize_bond_angles 1 -in:file:native 00001.pdb -silent_gz 1 -abinitio::rsd_wt_helix 0.5 -relax::default_repeats 15 -beta_cart 1 -frag3 00001.200.3mers -frag9 00001.200.9mers -abinitio::rg_reweight 0.5 -abinitio::increase_cycles 10 -out:file:silent_struct_type binary -ex1 1 -optimization::default_max_cycles 200 -relax::dualspace 1 -in:file:boinc_wu_zip NTF2chip_4741_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2874706 rosetta_4.07_x86_64-pc-linux-gnu: loadlocale.c:129: _nl_intern_locale_data: Assertion `cnt < (sizeof (_nl_value_type_LC_TIME) / sizeof (_nl_value_type_LC_TIME[0]))' failed. SIGABRT: abort called