Posts by frederick corse

1) Message boards : Number crunching : Mini Rosetta 3.45 (Message 74932) Posted 19 Jan 2013 by frederick corse Post: Hello I got 10 rb_01_18_36313_68791 three of them started up and they failed with error:atom tree:torsion_angle_dof_id_angle range error for message _
2) Message boards : Number crunching : Mini Rosetta 3.45 (Message 74903) Posted 16 Jan 2013 by frederick corse Post: HELLO I GOT SOME CDPK_ab_hybrid__35575.3mwua.rm-1-101_001 CDPk.ab.hybrid_35577.3mwua.rm-1-101-001 CDPK.ab.hybrid/.3557.3mwua.rm-1-121-0271 they fail at startup same failures as the others . Got another one CDPK_ab_hybrid_35584.3mwua.1245 it ran successful with 2 decoys
3) Message boards : Number crunching : minirosetta 2.03 (Message 64906) Posted 10 Jan 2010 by frederick corse Post: Hello I ran 9gbnnotyr_3gbn_3bfm_9jan2010_16860_ 11 it ran for 14399.07 secs and had 844 decoys the most i ever saw was 100 regards
4) Message boards : Number crunching : Minirosetta 1.97 (Message 63168) Posted 5 Sep 2009 by frederick corse Post: helo boinc I sampled the program core::scoring::etable::count_pair::CPCrossoverBehavior) 1 operator new(unsigned long) 1 malloc 1 std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const, std::allocator<char> const&) 1 char std::string::_S_construct<char const>(char const, char const*, std::allocator<char> const&, std::forward_iterator_tag) ore::graph::PointGraphEdgeData> >, double, utility::vector1<bool, std::allocator<bool> >) 1 operator new(unsigned long) 1 malloc 1 malloc_zone_malloc 1 szone_malloc_should_clear 1 small_malloc_from_free_list 1 0xffffffff 1 _sigtramp 1 __i686.get_pc_thunk.bx 1 core::graph::residue_point_graph_from_pose(core::pose::Pose const&, core::graph::UpperEdgeGraph<core::graph::PointGraphVertexData, core::gr 1 std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string() 1 __i686.get_pc_thunk.bx 4 core::scoring::etable::count_pair::CountPairAll::count(int, int, double&) const 3 core::scoring::etable::count_pair::CountPairIntraRes<core::scoring::etable::count_pair::CountPairCrossover3>::count(int, int, double&) const 2 core::graph::find_neighbors_restricted(utility::pointer::owning_ptr<core::graph::UpperEdgeGraph<core::graph::PointGraphVertexData, core::graph::PointGraphEdgeData> >, d
5) Message boards : Number crunching : Minirosetta 1.97 (Message 63167) Posted 5 Sep 2009 by frederick corse Post: Hello I am now running 8tim_Q_178_A_ddg_predictions_82409_1252 and it calls out that it is using 1.5G of memory . It has been running for over 40 minutes and it is still initalizing. the first time it was sent out came back as no reply.
6) Message boards : Number crunching : Problems with Rosetta version 5.98 (Message 58397) Posted 3 Jan 2009 by frederick corse Post: Hello there seems to be a problem with AT01 they all fail during download can't get input files. I've had them download to my G5 and also to my mac pro with the same error.
7) Message boards : Number crunching : Report problems with Rosetta version 5.34 (Message 30197) Posted 28 Oct 2006 by frederick corse Post: hello I got a unrecoverable error on1hz6ABOINC NATIVEJUMAAPS CLOSE CHAINBREAKS VARY ALL BOND ANGLEAS ALL BOND DISTANCES SAVE ALL OUT1306 14672 0 .mesage <file xfer error> <error code>161</error code. it didn't clear the listing for it,
8) Message boards : Number crunching : Report problems with Rosetta version 5.32 (Message 29219) Posted 12 Oct 2006 by frederick corse Post: Hello I was running two PSH 0007 hiv when the new version was posted . I got two programs downloaded at the same time and the first one aborted . The second one doidn't have what it was in the header. The screensaver started up but only ran the first step then it hungup. The program will run with out the screensaverif the screensaver is used it will reset the program. I tried another program on another computer and when the screensaver went toanother progam it aborted that one. I am running one dual G5 at 2.5ghz with 8gb of ram, the other one is G5dual 2.0ghz also with 8gb ram.
9) Message boards : Number crunching : Report Problems with Rosetta Version 5.13 (Message 15986) Posted 12 May 2006 by frederick corse Post: running homo log abrelax homo 002_t283_505_162 . When the progam started i don't get space for RSMD on the display
10) Questions and Answers : Macintosh : leghth of time the program runs before doing steps (Message 13409) Posted 10 Apr 2006 by frederick corse Post: running rossetta 4.9.8 fulatom relax dec7485_1_24_2.pbd432_18_0 when it started the protien broke up. It ran this way for two hours braking at various places before doing steps. When the program is running it required 101m of real memory and 695m of virtual memory. I am using a 2ghz,2.5ghz dual processor G5 with OSX10.4.6 -