Posts by robertmiles

61) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106199)
Posted 15 May 2022 by Profile robertmiles
Post:

They are engaged in cancer research. As for the right kind, few if any of the IT people know all of the 2000 or so computer languages.
Research by IT guys? So Krembil bought something they don't have the manpower to make work. FFS.

Why would they need to know a computer language? They're just copying from one server to another!

If they were copying to the same model of server, with the same operating system, it would probably be simple.

They probably aren't, so they'll need to make a lot of changes in the programs that run on the server. That requires knowledge of whatever computer languages those programs are written in.
62) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106197)
Posted 15 May 2022 by Profile robertmiles
Post:
I don't expect WCG to come up alive very soon. I believe that the Krembil Research Insttitute has bitten more than it can chew,
It's a multi billion dollar organisation, how can they not afford some IT guys?

Chances are that they have some. Just not enough of the right kind, or too much else for them to do.
The whole system is offline, what else are they doing, making coffee? Anyway, they have the money to hire some short term. As for right kind, WTF?

They are engaged in cancer research. As for the right kind, few if any of the IT people know all of the 2000 or so computer languages.
63) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106195)
Posted 14 May 2022 by Profile robertmiles
Post:
I don't expect WCG to come up alive very soon. I believe that the Krembil Research Insttitute has bitten more than it can chew,
It's a multi billion dollar organisation, how can they not afford some IT guys?

Chances are that they have some. Just not enough of the right kind, or too much else for them to do.
64) Message boards : Rosetta@home Science : More metal-binding proteins? (Message 106173)
Posted 8 May 2022 by Profile robertmiles
Post:
A protein that interacts with copper:

The copper jaws of venomous bloodworms could be a win for sustainable manufacturing

https://www.popsci.com/animals/bloodworm-fangs-sustainable-materials/?utm_source=spotim&utm_medium=spotim_recirculation&spot_im_redirect_source=pitc&spot_im_comment_id=sp_yZz9S9cM_439442_c_28VdQQjEvtRyH0XprpBRdWPPEju&spot_im_highlight_immediate=true
65) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106150)
Posted 2 May 2022 by Profile robertmiles
Post:
Hardly, avx came out at the start of 2011 - very new in terms of computers would be at least the start of 2021.
Snob! I have 7 PCs and only 2 have AVX. Most of my equipment is 2nd hand and an average of 10 years old. I fail to see the point in spending thousands on stuff that goes a few times faster than stuff that's 50 quid.

That should work if you have plenty of space and a very low local price for electricity.
66) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106089)
Posted 27 Apr 2022 by Profile robertmiles
Post:
[snip]
So how come Folding at Home makes code that runs on everything?
Easy enough if that code was written in OpenCL rather than it CUDA.
67) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106082)
Posted 26 Apr 2022 by Profile robertmiles
Post:
[snip]
Do you know if GPUGrid will ever support AMD cards? I doubt I'll ever buy one of those overpriced slow Nvidias. I found people mentioning they were trialling it in 2011 and 2015....

Anyway looks like GPUGrid ran out of work. I've shoved all my PCs on it to see if I ever get anything, seems they have a CPU and an ATI tickbox, not sure if those ever actually produce anything though.

They tried it for a while, and found that that OpenCL translations would be much slower than running in CUDA. So they dropped the idea of supporting AMD cards, at least until they start writing some new application.

CPU tasks are more likely, but only for new work for which they haven't written CUDA applications. Those are occasionally available these days.

I've thought of a way we might get them to offer more OpenCL work:

First, modify, BOINC so that if it can identify a GPU used in either CUDA or OpenCL, translate it to the identification of the same GPU used in the other of these, and mark that one as reserved also. It should also be able to say that the GPU is not available for the other one.

Next someone should identify all calls to the CUDA library used by the current application, and how much time that application uses in each.

Then, have Khronos develop equivalent calls to the OpenCL library that are especially fast on AMD GPUs.

Finally, give the GPUGRID project enough money to do something that they cannot do with only Nvidia GPUs.

How many of these do you think you can persuade all of the right people to do?

These changes also make it possible to start a task under either CUDA or OpenCL, run part of the task and produce files that are the input for the other part. It can then run the other part under the other GPU language if a translation is available, or just send those files back if there is no translation.
68) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106025)
Posted 25 Apr 2022 by Profile robertmiles
Post:
I prefer both to the situation at Predictor@Home. They lost the two members of their project team who knew how the create useful new workunits (probably because they graduated). For several months, they kept the project running by repeatedly raising the number of times a workunit could fail before no more tasks would be sent out for it. Some of the remaining workunits failed over 30 times before the professor in charge decided it was not worthwhile to let the project continue, and it shut down.
ROFL, Wikipedia says "Though it was quite successful, a "disagreement" between the project administration and the user base caused a mass exodus of participating users"

I'd expect a user base to disagree a lot and start exiting once every task started failing.

What I wrote came from the professor in charge.
69) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106020)
Posted 24 Apr 2022 by Profile robertmiles
Post:
Is it time to panic ?
There are less than a million tasks left on the front page . . .
Does this mean we may run out of pythons sometime this year :-)
Given that the most In progress for them was a bit over 21,000, they tend to average around 15,000 or less, and that there are presently only 10,500 In progress, i think it will be a long, long, long time before they get cleared due to the very minuscule number of systems that are actually processing them.
I make that four months. Depends how soon you want to panic.



And then we get to have fun with the buggy stuff.

I prefer both to the situation at Predictor@Home. They lost the two members of their project team who knew how the create useful new workunits (probably because they graduated). For several months, they kept the project running by repeatedly raising the number of times a workunit could fail before no more tasks would be sent out for it. Some of the remaining workunits failed over 30 times before the professor in charge decided it was not worthwhile to let the project continue, and it shut down.
70) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106008)
Posted 24 Apr 2022 by Profile robertmiles
Post:
Can you unupdate to 5.2.44?


I'll give that a try if there are continued problems. I just went back and looked, the existing tasks are still postponed (1 day hasn't elapsed yet, and there isn't an obvious way to manually resume them), but one of the other python tasks seems to be running ok so maybe it was just a transient issue.

I've found a way to manually resume such tasks. Suspend all tasks, then exit BOINC. I've forgotten if it's necessary to restart Windows at this point. Then restart BOINC and tell it to resume tasks.
,
71) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 106000)
Posted 23 Apr 2022 by Profile robertmiles
Post:
And it's weird you have so many .tmp files. I thought BOINC deleted all files once the data was uploaded and reported?

It is odd - I have no explanation or any idea what circumstances created it.
I only have this observation, for whatever value anyone else can find in it.
People might want to examine their own ProgramData folder and pre-empt the events that affected me if they see the same thing.
We're all in self-help mode

It TRIES to delete all files once the data was uploaded and reported. However, improperly shutting it down can prevent this from happening,

I use a disk cleaner on an SSD. It only looks for files it can delete.

https://www.google.com/search?client=firefox-b-1-d&q=disk+cleanup+windows+10

It should delete any temporary files that BOINC left on place when it was improperly shut down, such as having the power turned off without first telling BOINC to suspend and exit.

I only allow it to delete types of files that I agree are no longer useful.
72) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105996)
Posted 22 Apr 2022 by Profile robertmiles
Post:
There appear to be some Python tasks that try to reserve about 19 GB of disk space,

Rosetta@home: Notice from server
rosetta python projects needs 5439.45MB more disk space. You currently have 13634.04 MB available and it needs 19073.49 MB.
4/22/2022 9:08:37 AM

I haven't seen anything yet on whether they do anything useful with that much disk space.
73) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105983)
Posted 20 Apr 2022 by Profile robertmiles
Post:
Thank you. I have changed the settings. I am not sure what you mean by "They're not too bad if you have AVX."

The more recent CPUs have the AVX group of instructions needed to run the Python tasks correctly. Many of the older CPUs don't.
74) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105957)
Posted 15 Apr 2022 by Profile robertmiles
Post:
My computer has both the 64-bit and the 32-bit versions of VirtualBox installed. It runs 64-bit vbox apps.
This is news to me, I just have 64 bit installed, I think, no idea how to find out. Does that mean I can't run the 32 bit ones? I would have thought the 64 would include the 32?

My 32-bit version may be left over from the earlier BOINC work that used it, such as RNA World. It's a separate program.

If you can reach the command line while no Virtualbox task is running, Try entering vbox to test if the 32-bit version can be found. If the program starts, try entering exit to see if this will shut it down. For a similar test for the 64-bit version, enter vbox64 instead.
Not sure what you mean. Where do I enter this? I'm running Windows 11.

Sorry, I have no information on whether Windows 11 even makes a way to do it available.
75) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105952)
Posted 15 Apr 2022 by Profile robertmiles
Post:
When i run vbox i get "vbox" is not recognized as an internal or external command operable program or batch file
The same happens to "vbox64"

I guessed wrong on how to start the emulators, then.

Or maybe neither is available for your Android computer.
76) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105950)
Posted 15 Apr 2022 by Profile robertmiles
Post:
My computer has both the 64-bit and the 32-bit versions of VirtualBox installed. It runs 64-bit vbox apps.
This is news to me, I just have 64 bit installed, I think, no idea how to find out. Does that mean I can't run the 32 bit ones? I would have thought the 64 would include the 32?

My 32-bit version may be left over from the earlier BOINC work that used it, such as RNA World. It's a separate program.

If you can reach the command line while no Virtualbox task is running, Try entering vbox to test if the 32-bit version can be found. If the program starts, try entering exit to see if this will shut it down. For a similar test for the 64-bit version, enter vbox64 instead.
77) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105948)
Posted 15 Apr 2022 by Profile robertmiles
Post:
robertmiles wrote:
Virtualbox has the old vbox, which handles 32-bit programs
.
.
.
Where's any evidence that the multicore Cosmology tasks use Virtualbox?

It's mentioned at the apps overview page of any project:
https://boinc.bakerlab.org/rosetta/apps.php
https://www.cosmologyathome.org/apps.php


no "()" in the "Version" col indicates a native/legacy app without special requirements like SSE, AVX ...
(vbox64) in the "Version" col indicates an app that requires VirtualBox 64-bit.
(vbox64_mt) in the "Version" col indicates an app that requires VirtualBox 64-bit and is able to run multicore VMs.
64-bit vbox apps don't run on a computer that has 32-bit vbox installed.

Thank you.

It looks like Cosmology@Home ran out of space to write this in the other place where I expected it to appear.

I'm now back after a week with no internet access.

My computer has both the 64-bit and the 32-bit versions of VirtualBox installed. It runs 64-bit vbox apps.
78) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105889)
Posted 9 Apr 2022 by Profile robertmiles
Post:
I've looked for memory boards compatible with my computer but with more memory each and didn't find any. Crucial gives me a page not found error when I try there.
If you want say a single stick of 32GB DDR4 3200, type this into Ebay:
1x32GB DDR4 3200

Or if you want two 16GB sticks of 2600:
2x16GB DDR4 2600

Look what motherboard and CPU you have and decide what the max size and speed sticks they will take are. Let me know the CPU and MB models if you want me to find out.

Too late at night here to check now.

Where's any evidence that the multicore Cosmology tasks use Virtualbox?
This is the only types I've ever received:

Cosmology@Home	camb_boinc2docker	camb_boinc2docker_2281906_1648978147.594575_0	00:11:31 (00:55:39)	04-04-2022 12:25 AM	04-04-2022 12:25 AM	6C	80.54	Reported: OK +	Xeon 1			
Cosmology@Home	camb_boinc2docker	camb_boinc2docker_2282323_1648978163.467520_0	00:09:20 (00:47:28)	04-04-2022 03:40 AM	04-04-2022 03:40 AM	6C	84.76	Reported: OK +	Xeon 1			

The 6C implies 6 cores per task and says nothing about whether Virtualbox is used.

6 cores (or whatever you choose) for Vbox and 1 core for legacy.

We agree on the legacy tasks.
79) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105887)
Posted 9 Apr 2022 by Profile robertmiles
Post:
Q9450 Doesn't support AVX. Virtualbox jobs get stuck if avx is missing.
Not on cosmology or LHC, that's only a Rosetta requirement. I have 5 computers with no AVX and they all run Cosmology and LHC VB tasks fine.

Which Virtualbox program does this?
I'm using version 5.2.44, from here: https://www.virtualbox.org/wiki/Download_Old_Builds_5_2 It's 64 bit.

Also, the Cosmology tasks on my computer do not appear to use any Virtualbox program at all. Most of them use the multithreaded feature, which divides the work among 4 virtual CPU cores, without using a Virtualbox program.
That can't be be right. If the tasks are called "Cosmology Legacy", they're not Vbox and use 1 core. The Vbox ones are the only multicore ones. Linux might be different if you use that (but it appears you're on Windows only).

I'm on Windows only,

Where's any evidence that the multicore Cosmology tasks use Virtualbox?

I've tried to find memory boards compatible with my computer but with more memory each. I didn't find any.
80) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 105884)
Posted 9 Apr 2022 by Profile robertmiles
Post:
BOINC is giving me error messages about being unable to run Python tasks because the need very large amounts of free memory to even start, such as about 19 GB. Is this a real requirement for them, or just bad calculations?
Sometimes they ask for more than they will actually need, but they do use a lot. For example I have a 6 core i5 with 16GB of RAM. It can get 5 Pythons running, then the memory is 80-90% full and doesn't load the 6th.

19GB sounds unusual, since that would stop any from running on my above machine at all, and I've never seen that.

Make that SOME Python tasks. My computer has 32 GB of memory, and often runs seven Python tasks at once. There's no good reason to believe that every Python task requires the same amount of memory, even for just the task startup. The amount of memory required for task startup is often much more than the task is actually uses after it starts.


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