Posts by [VENETO] boboviz

1) Message boards : Number crunching : Docker/WLS vs VirtualBox (Message 112299)
Posted 3 hours ago by Profile [VENETO] boboviz
Post:
This important new function of Boinc enviroment will be introduced in Boinc 9 (the beta of this version will be, probably, released at the end of December, as admins said in the last Boinc Project Call).


The BUDA is still in beta test, and lhc-dev started using it with "Theory" app both for Win and Linux
Seems more light than the vbox app...

https://lhcathomedev.cern.ch/lhcathome-dev/apps.php
2) Message boards : Number crunching : Docker/WLS vs VirtualBox (Message 112286)
Posted 22 hours ago by Profile [VENETO] boboviz
Post:
This is one of the targets of BUDA (Boinc Unified Docking App).


While we are waiting for stable release of Buda, the Boinc dev team released a new version of wrapper (26210)
vboxwrapper (Mac): fix startup failure on Mac via #6016 by @davidpanderson
vboxwrapper: create the 'virtualbox home directory' in the project dir via #6018 by @davidpanderson
improve vboxwrapper network setup via #6111 by @computezrmle
setup vbox profile location via #6116 by @computezrmle
remove obsolete function launch_vboxsvc() via #6119 by @computezrmle
Cleanup 'launch_vboxsvc' associated code via #6129 by @computezrmle
Replace getcwd() with boinc_getcwd() via #6132 by @computezrmle
Remove unused files and variables via #6139 by @computezrmle
3) Message boards : Rosetta@home Science : Neo-1 (Message 112279)
Posted 3 days ago by Profile [VENETO] boboviz
Post:
Waiting for some publications to see if it is a groundbreak
4) Message boards : Rosetta@home Science : Neo-1 (Message 112278)
Posted 3 days ago by Profile [VENETO] boboviz
Post:
The world’s most advanced atomistic foundation model, unifying structure prediction and all-atom de novo generation for the first time - to decode and design the structure of life. Neo-1 is trained to generate molecules and their structures in full-atom resolution from various starting prompts: sequence, structure, properties or masked versions. This makes Neo-1 the most controllable and general atomistic foundation model, replacing a large series of specialist models. It also unlocks end-to-end rational glue design from sequence alone. Neo-1 integrates directly with experimental data, enabling rapid and iterative optimization in drug discovery projects. Applications already include designing molecular glues, PROTACs, and antibodies, significantly accelerating the path from computational design to experimental validation.


Neo-1
5) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112273)
Posted 6 days ago by Profile [VENETO] boboviz
Post:
How long does it take some of you super computers to complete 1 wu? Just curious.


As said Grant, the difference is the number of decoys (in the screensaver are named "Model") you can run in a wu.
An old core I3, for example, makes 50 decoys in 4 hrs in a wu
The same wu, in 4hrs, in a new Threadripper maker 400 decoys (the numbers is at random, only as example)

You have your credit based on the numbers of decoys
6) Message boards : Rosetta@home Science : ABCFold (Message 112259)
Posted 8 days ago by Profile [VENETO] boboviz
Post:
Structural biology has seen a revolution with deep learning-based protein structure predictors like AlphaFold 3, Boltz-1, and Chai-1. However, running and comparing these models efficiently remains a challenge.
ABCFold is a new tool that simplifies the process of running and benchmarking AlphaFold 3, Boltz-1, and Chai-1, allowing users to generate structure predictions with a standardized input format.


ABCFold
7) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112253)
Posted 8 days ago by Profile [VENETO] boboviz
Post:
Pete Tong


Ah, ok, thank you
By the way, i downloaded some wus some minutes ago...
8) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112250)
Posted 8 days ago by Profile [VENETO] boboviz
Post:
It's all going Pete Tong...

?? I'm from Italy and i don't understand...
9) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112246)
Posted 9 days ago by Profile [VENETO] boboviz
Post:
Home page says that there are 5 milions of wus ready to send, but the server status page is 0...
Yeah, the Server Status might be showing all green, but there have been hiccups for several hours now.
Waiting Validation has had a few stalls, and prior to now, Work in progress dopped off 6 hours ago for a while due to no Tasks ready to send back then.

And now once again- no Tasks Ready to send, and the Tasks in progress are dropping away as work is returned, but no-one is able to get any more.


Now 6.5 milions on the home page!!
10) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112244)
Posted 9 days ago by Profile [VENETO] boboviz
Post:
Currently ~1.5m. Nice to see the workload getting topped up regularly. It breeds confidence.


Home page says that there are 5 milions of wus ready to send, but the server status page is 0...
11) Message boards : News : Rosetta@home Update (Message 112235)
Posted 11 days ago by Profile [VENETO] boboviz
Post:
Hello.

It would be also nice to provide some further details on Rosetta Beta application status - i.e., release roadmap and main changes/features.


Good idea.
For example, the new "7merredo_7_hallucinated" is a new app. What is about?
12) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112228)
Posted 12 days ago by Profile [VENETO] boboviz
Post:
It is now almos noon New York City time


Between the moon and NY City
13) Message boards : Rosetta@home Science : RosettaVS (Message 112212)
Posted 15 days ago by Profile [VENETO] boboviz
Post:
We hope to see some of this functions in Rosetta@Home


Yeaph, a lot of these wus in these days...
14) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112197)
Posted 19 days ago by Profile [VENETO] boboviz
Post:
Screensaver problems with RosettaVS.
But, at the end, who cares? The important part is the scientific results and, up to now, all wus are validated!!
15) Message boards : News : Rosetta@home Update (Message 112171)
Posted 23 days ago by Profile [VENETO] boboviz
Post:
I'm almost crying after all this time from the last news!
As said Grant (SSSF), a gpu client is welcome

c'mon guys, let's do science!!
16) Message boards : Rosetta@home Science : Rosetta Workshop 2024 (Message 112145)
Posted 29 days ago by Profile [VENETO] boboviz
Post:
Winter RosettaCon
Some points are interesting, like this:
"5:45 - 6:00: Andreas Petrides: "Folding in the Web: Bringing Foldit to your Browser""
17) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112125)
Posted 22 Feb 2025 by Profile [VENETO] boboviz
Post:
2 weeks apart, 17yrs ago. That must have been a very dull period of time for us both to arrive here.

We are getting old, my friend..

I don't like to spread myself too thinly - Rosetta remains my #1 throughout.

+1
18) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112110)
Posted 19 Feb 2025 by Profile [VENETO] boboviz
Post:
Excellent and highly appropriate
https://www.youtube.com/watch?v=mGgMZpGYiy8


Today the daemons are green, but still "waiting for validation".
And it's Wednesday!
19) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112087)
Posted 14 Feb 2025 by Profile [VENETO] boboviz
Post:
...see you Friday

Lol...


I don't care if Monday's blue
Tuesday's gray and Wednesday too
Thursday I don't care about you
It's Friday, I'm in love

Monday you can fall apart
Tuesday, Wednesday, break my heart
Oh, Thursday doesn't even start
It's Friday, I'm in love
20) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 112082)
Posted 12 Feb 2025 by Profile [VENETO] boboviz
Post:
What day is it today? Wednesday!
And what happens on Wednesday?


Next 20



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