Posts by Petr Malik

1) Message boards : News : Rosetta@home Update (Message 112229)
Posted 14 Mar 2025 by Petr Malik
Post:

Hello.

It would be also nice to provide some further details on Rosetta Beta application status - i.e., release roadmap and main changes/features.

Thank you.

2) Message boards : Number crunching : Rosetta Beta 6.00 (Message 111970)
Posted 27 Jan 2025 by Petr Malik
Post:

Just got 4 of these errors from Rosetta Beta v6.06 x86_64-pc-linux-gnu
This one is from WU 1418259909

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)</message>
<stderr_txt>
command: ../../projects/boinc.bakerlab.org_rosetta/rosetta_beta_6.06_x86_64-pc-linux-gnu @10aa_1_c_hal_10aa_ce5569_d161_0001.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937
Using database: database_f5ae1de8e1/database

ERROR: Error in simple_cycpep_predict app!  The imported native pose has a different number of residues than the sequence provided.
ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2798
BOINC:: Error reading and gzipping output datafile: default.out
03:13:24 (16644): called boinc_finish(1)

</stderr_txt>
]]>

3) Message boards : Number crunching : Problems and Technical Issues with Rosetta@home (Message 110200)
Posted 13 Dec 2024 by Petr Malik
Post:

Hi.

Just wondering, is this issue I have been getting currently same as the one recently discussed on this thread? Note that the error does not seem to be related to expired certificate: SSL certificate problem: unable to get local issuer certificate

Thanks.

Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] HTTP_OP::init_get(): https://boinc-files.bakerlab.org/rosetta/download/301/8a_hal_v_hal_8aa_4jp9203_d0_0001_1.flags
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | Started download of 8a_hal_v_hal_8aa_4jp9203_d0_0001_1.flags
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] HTTP_OP::init_get(): https://boinc-files.bakerlab.org/rosetta/download/e4/8a_hal_w_hal_8aa_4jp5147_d368_0001_1.zip
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | Started download of 8a_hal_w_hal_8aa_4jp5147_d368_0001_1.zip
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  Too old connection (261 seconds idle), disconnect it
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  Connection 29 seems to be dead
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  shutting down connection #29
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  TLSv1.3 (OUT), TLS alert, close notify (256):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  Hostname in DNS cache was stale, zapped
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  Found bundle for host: 0x558c468b45b0 [serially]
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  Server does not support multiplex (yet)
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  Host boinc-files.bakerlab.org:443 was resolved.
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  IPv6: (none)
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  IPv4: 128.95.160.135, 128.95.160.134
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:    Trying 128.95.160.135:443...
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  Hostname 'boinc-files.bakerlab.org' was found in DNS cache
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:    Trying 128.95.160.135:443...
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  Connected to boinc-files.bakerlab.org (128.95.160.135) port 443
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  ALPN: curl offers h2,http/1.1
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  TLSv1.3 (OUT), TLS handshake, Client hello (1):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  Connected to boinc-files.bakerlab.org (128.95.160.135) port 443
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  ALPN: curl offers h2,http/1.1
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  TLSv1.3 (OUT), TLS handshake, Client hello (1):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  TLSv1.3 (IN), TLS handshake, Server hello (2):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  TLSv1.2 (IN), TLS handshake, Certificate (11):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  TLSv1.2 (OUT), TLS alert, unknown CA (560):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  SSL certificate problem: unable to get local issuer certificate
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#23] Info:  closing connection #32
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] HTTP error: SSL peer certificate or SSH remote key was not OK
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  TLSv1.3 (IN), TLS handshake, Server hello (2):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  TLSv1.2 (IN), TLS handshake, Certificate (11):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  TLSv1.2 (OUT), TLS alert, unknown CA (560):
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  SSL certificate problem: unable to get local issuer certificate
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] [ID#24] Info:  closing connection #33
Fri 13 Dec 2024 05:50:06 PM | Rosetta@home | [http] HTTP error: SSL peer certificate or SSH remote key was not OK
Fri 13 Dec 2024 05:50:07 PM |  | Project communication failed: attempting access to reference site
Fri 13 Dec 2024 05:50:07 PM |  | [http] HTTP_OP::init_get(): https://www.google.com/
Fri 13 Dec 2024 05:50:07 PM | Rosetta@home | Temporarily failed download of 8a_hal_v_hal_8aa_4jp9203_d0_0001_1.flags: transient HTTP error
Fri 13 Dec 2024 05:50:07 PM | Rosetta@home | Backing off 05:00:48 on download of 8a_hal_v_hal_8aa_4jp9203_d0_0001_1.flags

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